Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0010565

Physical Location & Seq

Genomic Coordinates Forward (+)

9331791 .. 9332797

Gene Structure 1007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG108500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTGGAGCTTAGGAGTTACACTGCTTCCGTTTCAGGTTCTCTCGACCCAGCTTGTATCACAATGTTCGGAGATCATCGTGTTGATATAAGACCCATTGTTGAGAAACTAGATCTTGTCATGCCTGAGGAGACTGCCGTTGTAGGAGACGCAAAAGGCTCCTTTCTGTTCCGCCGCAGGGACCAAACCCAAAATTACAGTGCTGATCTGTTCTTCTTTGATGCTGCTGCTCTAGTATTTGCCAGGGACCAAAACAAGTCTGCTGAGTTGGGGGAAACTCGGTTCCATGTGGCCGTGGCCGACGGCATAATTCCATTTGGTCCTGAGCTCAGGAGCGTTTCAGTGTTTGAGGATTTCTTTGCTCAATCTTGGATTTCGGGCGTAGTGGAAGGAGCAGAAGAAGGGTATCCCATGCTTGATTGCGTCACTGTTTTACAACAGCTTATAAATCAGTTGGACTTGGGAAACCCAAATTTATACATTGAGGTCAGGAAAGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST_C

Protein Analysis

166

Amino Acids

18.44

Weight (kDa)

4.51

Isoelectric Point (pI)

41.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010565)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08570
malus_domestica	MD00G1199400.v1.1 MD05G1336900.v1.1 MD06G1139000.v1.1 MD06G1139500.v1.1 MD14G1155100.v1.1
prunus_persica	Prupe.5G149100_v2.0.a1
pyrus_communis	pycom14g12890
rosa_laevigata	RLG00000004584
rosa_roxburghii	Rroxscaffold_3G00265110 Rroxscaffold_3G00265120
rosa_rugosa	Rorug06G0500100 Rorug06G0500200 Rorug06G0500200 Rorug06G0500300
rosa_samantha	Rh7AG105400 Rh7BG108200 Rh7CG110200 Rh7DG108400 Rh7DG108500
rosa_wichuraiana	Rw7G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	446
AciI	CCGC	2 cut(s)	172, 175
AcoI	YGGCCR	2 cut(s)	291, 297
AcsI	RAATTY	1 cut(s)	472
AfiI	CCNNNNNNNGG	1 cut(s)	178
AjnI	CCWGG	1 cut(s)	242
AloI	GAACNNNNNNTCC	2 cut(s)	266, 298
AluBI	AGCT	4 cut(s)	10, 53, 328, 442
AluI	AGCT	4 cut(s)	10, 53, 328, 442
Alw21I	GWGCWC	1 cut(s)	330
Alw26I	GTCTC	2 cut(s)	125, 141
AoxI	GGCC	2 cut(s)	291, 297
ApeKI	GCWGC	2 cut(s)	224, 227
ApoI	RAATTY	1 cut(s)	472
AspS9I	GGNCC	3 cut(s)	181, 247, 320
AvaII	GGWCC	3 cut(s)	181, 247, 320
AxyI	CCTNAGG	1 cut(s)	126
BanII	GRGCYC	1 cut(s)	330
Bbv12I	GWGCWC	1 cut(s)	330
BbvI	GCAGC	2 cut(s)	211, 214
BceAI	ACGGC	3 cut(s)	122, 278, 319
BciT130I	CCWGG	1 cut(s)	244
BciVI	GTATCC	1 cut(s)	417
BcoDI	GTCTC	2 cut(s)	125, 141
BfaI	CTAG	2 cut(s)	110, 233
BfuI	GTATCC	1 cut(s)	417
BglII	AGATCT	1 cut(s)	112
BisI	GCNGC	3 cut(s)	175, 225, 228
BlsI	GCNGC	3 cut(s)	176, 226, 229
Bme1390I	CCNGG	1 cut(s)	244
Bme18I	GGWCC	3 cut(s)	181, 247, 320
BmgT120I	GGNCC	3 cut(s)	181, 247, 320
BmiI	GGNNCC	4 cut(s)	160, 182, 248, 284
BmrFI	CCNGG	1 cut(s)	244
BmsI	GCATC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	26
Bpu10I	CCTNAGC	3 cut(s)	11, 324, 329
BsaJI	CCNNGG	2 cut(s)	243, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	178
Bse21I	CCTNAGG	1 cut(s)	126
BseBI	CCWGG	1 cut(s)	244
BseDI	CCNNGG	2 cut(s)	243, 294
BseLI	CCNNNNNNNGG	1 cut(s)	178
BseMII	CTCAG	4 cut(s)	117, 255, 315, 343
BseRI	GAGGAG	1 cut(s)	143
BseXI	GCAGC	2 cut(s)	211, 214
BseYI	CCCAGC	1 cut(s)	49
BshFI	GGCC	2 cut(s)	293, 299
BsiHKAI	GWGCWC	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	194, 260
BslI	CCNNNNNNNGG	1 cut(s)	178
BsmAI	GTCTC	2 cut(s)	125, 141
BsmBI	CGTCTC	1 cut(s)	141
BsmFI	GGGAC	2 cut(s)	194, 260
BsnI	GGCC	2 cut(s)	293, 299
Bsp1286I	GDGCHC	1 cut(s)	330
Bsp143I	GATC	3 cut(s)	73, 112, 205
BspACI	CCGC	2 cut(s)	172, 175
BspANI	GGCC	2 cut(s)	293, 299
BspCNI	CTCAG	4 cut(s)	118, 256, 316, 342
BspLI	GGNNCC	4 cut(s)	160, 182, 248, 284
BssECI	CCNNGG	2 cut(s)	243, 294
BssMI	GATC	3 cut(s)	73, 112, 205
Bst2UI	CCWGG	1 cut(s)	244
Bst4CI	ACNGT	2 cut(s)	200, 430
BstDEI	CTNAG	5 cut(s)	11, 126, 264, 324, 329
BstDSI	CCRYGG	1 cut(s)	294
BstKTI	GATC	3 cut(s)	76, 115, 208
BstMAI	GTCTC	2 cut(s)	125, 141
BstMBI	GATC	3 cut(s)	73, 112, 205
BstNI	CCWGG	1 cut(s)	244
BstSCI	CCNGG	1 cut(s)	242
BstV1I	GCAGC	2 cut(s)	211, 214
BstX2I	RGATCY	1 cut(s)	112
BstYI	RGATCY	1 cut(s)	112
Bsu36I	CCTNAGG	1 cut(s)	126
BsuI	GTATCC	1 cut(s)	417
BsuRI	GGCC	2 cut(s)	293, 299
BtgI	CCRYGG	1 cut(s)	294
BtsI	GCAGTG	1 cut(s)	21
BtsIMutI	CAGTG	4 cut(s)	21, 205, 348, 426
Cfr13I	GGNCC	3 cut(s)	181, 247, 320
CseI	GACGC	2 cut(s)	158, 412
CviAII	CATG	3 cut(s)	121, 287, 412
CviJI	RGCY	7 cut(s)	10, 53, 159, 293, 299, 328, 442
CviKI_1	RGCY	7 cut(s)	10, 53, 159, 293, 299, 328, 442
DdeI	CTNAG	5 cut(s)	11, 126, 264, 324, 329
DpnI	GATC	3 cut(s)	75, 114, 207
DpnII	GATC	3 cut(s)	73, 112, 205
EaeI	YGGCCR	2 cut(s)	291, 297
EciI	GGCGGA	1 cut(s)	161
Ecl136II	GAGCTC	1 cut(s)	328
Eco24I	GRGCYC	1 cut(s)	330
Eco47I	GGWCC	3 cut(s)	181, 247, 320
Eco53kI	GAGCTC	1 cut(s)	328
Eco81I	CCTNAGG	1 cut(s)	126
EcoICRI	GAGCTC	1 cut(s)	328
EcoRII	CCWGG	1 cut(s)	242
EcoT38I	GRGCYC	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	141
FaeI	CATG	3 cut(s)	124, 290, 415
FaiI	YATR	7 cut(s)	89, 122, 288, 308, 413, 446, 478
FaqI	GGGAC	2 cut(s)	194, 260
FatI	CATG	3 cut(s)	120, 286, 411
Fnu4HI	GCNGC	3 cut(s)	175, 225, 228
FriOI	GRGCYC	1 cut(s)	330
Fsp4HI	GCNGC	3 cut(s)	175, 225, 228
FspBI	CTAG	2 cut(s)	110, 233
GluI	GCNGC	3 cut(s)	175, 225, 228
GsaI	CCCAGC	1 cut(s)	53
GsuI	CTGGAG	1 cut(s)	26
HaeIII	GGCC	2 cut(s)	293, 299
HgaI	GACGC	2 cut(s)	158, 412
Hin1II	CATG	3 cut(s)	124, 290, 415
Hpy188I	TCNGA	1 cut(s)	71
Hpy188III	TCNNGA	4 cut(s)	44, 323, 331, 490
Hpy99I	CGWCG	1 cut(s)	305
HpyAV	CCTTC	2 cut(s)	383, 395
HpyCH4III	ACNGT	2 cut(s)	200, 430
HpyF3I	CTNAG	5 cut(s)	11, 126, 264, 324, 329
Hsp92II	CATG	3 cut(s)	124, 290, 415
Kzo9I	GATC	3 cut(s)	73, 112, 205
LmnI	GCTCC	4 cut(s)	7, 164, 333, 392
LpnPI	CCDG	9 cut(s)	21, 63, 138, 163, 229, 256, 316, 336, 475
Lsp1109I	GCAGC	2 cut(s)	211, 214
LweI	GCATC	1 cut(s)	211
MaeI	CTAG	2 cut(s)	110, 233
MaeIII	GTNAC	2 cut(s)	17, 424
MalI	GATC	3 cut(s)	75, 114, 207
MboI	GATC	3 cut(s)	73, 112, 205
MboII	GAAGA	2 cut(s)	205, 410
MflI	RGATCY	1 cut(s)	112
MhlI	GDGCHC	1 cut(s)	330
MluCI	AATT	3 cut(s)	193, 309, 472
MmeI	TCCRAC	1 cut(s)	435
MnlI	CCTC	3 cut(s)	121, 343, 478
MspR9I	CCNGG	1 cut(s)	244
MvaI	CCWGG	1 cut(s)	244
NdeII	GATC	3 cut(s)	73, 112, 205
NlaIII	CATG	3 cut(s)	124, 290, 415
NlaIV	GGNNCC	4 cut(s)	160, 182, 248, 284
NmuCI	GTSAC	1 cut(s)	424
PkrI	GCNGC	3 cut(s)	176, 226, 229
PsiI	TTATAA	1 cut(s)	446
Psp124BI	GAGCTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	242
PspFI	CCCAGC	1 cut(s)	49
PspGI	CCWGG	1 cut(s)	242
PspN4I	GGNNCC	4 cut(s)	160, 182, 248, 284
PspPI	GGNCC	3 cut(s)	181, 247, 320
PsuI	RGATCY	1 cut(s)	112
SacI	GAGCTC	1 cut(s)	330
SatI	GCNGC	3 cut(s)	175, 225, 228
Sau3AI	GATC	3 cut(s)	73, 112, 205
Sau96I	GGNCC	3 cut(s)	181, 247, 320
ScrFI	CCNGG	1 cut(s)	244
SduI	GDGCHC	1 cut(s)	330
SetI	ASST	7 cut(s)	12, 40, 55, 330, 444, 489, 499
SfaNI	GCATC	1 cut(s)	211
SinI	GGWCC	3 cut(s)	181, 247, 320
Sse9I	AATT	3 cut(s)	193, 309, 472
SsiI	CCGC	2 cut(s)	172, 175
SspMI	CTAG	2 cut(s)	110, 233
SstI	GAGCTC	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	200, 430
TaqI	TCGA	1 cut(s)	45
TasI	AATT	3 cut(s)	193, 309, 472
TauI	GCSGC	1 cut(s)	177
TscAI	CASTG	4 cut(s)	28, 205, 348, 433
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	2 cut(s)	224, 227
Tsp45I	GTSAC	1 cut(s)	424
TspGWI	ACGGA	1 cut(s)	19
TspRI	CASTG	4 cut(s)	28, 205, 348, 433
VpaK11BI	GGWCC	3 cut(s)	181, 247, 320
XapI	RAATTY	1 cut(s)	472
XspI	CTAG	2 cut(s)	110, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.