Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0010565

Physical Location & Seq

Genomic Coordinates Reverse (-)

58553673 .. 58554873

Gene Structure 1201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00265120.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 474 bp

ATGGCCAACGAAGGAGTTGTCTCTGTCTTCTCTAAGGTGAACGACGACATTTTGCTGAACATTCTGAGGAGACTGCCGGCGGTGGCGTTTGCATGTGCGGCGTGCGTTAGCAGAGCGTGGAACAGAAACTGCAGTAGCATTCTCTGCCGCCCCAAGTTCGTTTCAGCTATGTCTGTGAACCCAGACCCCTGTGAGGCTGTGGATGAGGTGTTTGATGAGGTTTTCTCTCAGCCGATTCGTCCCGACTTTGCAATTGTTTACATTGGCATGGAGTTTAGCTTGCCATTCACAAGCCTCTTTGTCTTCAAAAAGGTACCGCGTGGAGTTCCAATCATCATCAATCAAGCTGTTGGGCTAATCGGCGTCGATGCTGGGGCAGATGAAATCGTAGAGGTTAGTAAACCGAAAACGTGCTATTTCGGCCTTATGCAGGTGAAGTGGGAATTGGAAAATGGGGCCCAACTATTGGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST_C

Protein Analysis

157

Amino Acids

17.22

Weight (kDa)

4.97

Isoelectric Point (pI)

34.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010565)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08570
malus_domestica	MD00G1199400.v1.1 MD05G1336900.v1.1 MD06G1139000.v1.1 MD06G1139500.v1.1 MD14G1155100.v1.1
prunus_persica	Prupe.5G149100_v2.0.a1
pyrus_communis	pycom14g12890
rosa_laevigata	RLG00000004584
rosa_roxburghii	Rroxscaffold_3G00265110 Rroxscaffold_3G00265120
rosa_rugosa	Rorug06G0500100 Rorug06G0500200 Rorug06G0500200 Rorug06G0500300
rosa_samantha	Rh7AG105400 Rh7BG108200 Rh7CG110200 Rh7DG108400 Rh7DG108500
rosa_wichuraiana	Rw7G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	421
Acc36I	ACCTGC	1 cut(s)	421
Acc65I	GGTACC	1 cut(s)	313
AccB1I	GGYRCC	1 cut(s)	313
AccB7I	CCANNNNNTGG	1 cut(s)	466
AccII	CGCG	1 cut(s)	319
AciI	CCGC	4 cut(s)	80, 98, 148, 317
AcoI	YGGCCR	1 cut(s)	3
AcyI	GRCGYC	1 cut(s)	363
AfaI	GTAC	1 cut(s)	315
AfiI	CCNNNNNNNGG	3 cut(s)	193, 430, 466
AgsI	TTSAA	1 cut(s)	307
AjuI	GAANNNNNNNTTGG	2 cut(s)	428, 460
AluBI	AGCT	3 cut(s)	167, 279, 347
AluI	AGCT	3 cut(s)	167, 279, 347
Alw26I	GTCTC	2 cut(s)	25, 64
AlwNI	CAGNNNCTG	1 cut(s)	129
AoxI	GGCC	3 cut(s)	3, 421, 456
ApaI	GGGCCC	1 cut(s)	460
ArsI	GACNNNNNNTTYG	1 cut(s)	35
Asp718I	GGTACC	1 cut(s)	313
AspS9I	GGNCC	2 cut(s)	456, 457
AsuHPI	GGTGA	2 cut(s)	49, 445
BaeGI	GKGCMC	1 cut(s)	460
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	313
BanII	GRGCYC	1 cut(s)	460
BbsI	GAAGAC	2 cut(s)	19, 295
BcoDI	GTCTC	2 cut(s)	25, 64
BfmI	CTRYAG	1 cut(s)	130
BfuAI	ACCTGC	1 cut(s)	421
BisI	GCNGC	2 cut(s)	99, 148
BlsI	GCNGC	2 cut(s)	100, 149
BmgT120I	GGNCC	2 cut(s)	456, 457
BmiI	GGNNCC	3 cut(s)	315, 457, 458
BmsI	GCATC	1 cut(s)	358
BpiI	GAAGAC	2 cut(s)	19, 295
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BsaHI	GRCGYC	1 cut(s)	363
Bsc4I	CCNNNNNNNGG	3 cut(s)	193, 430, 466
Bse118I	RCCGGY	1 cut(s)	76
BseGI	GGATG	1 cut(s)	208
BseLI	CCNNNNNNNGG	3 cut(s)	193, 430, 466
BseMII	CTCAG	2 cut(s)	56, 242
BseRI	GAGGAG	1 cut(s)	82
BseSI	GKGCMC	1 cut(s)	460
BseYI	CCCAGC	1 cut(s)	371
Bsh1236I	CGCG	1 cut(s)	319
BshFI	GGCC	3 cut(s)	5, 423, 458
BshNI	GGYRCC	1 cut(s)	313
BsiSI	CCGG	1 cut(s)	77
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	3 cut(s)	193, 430, 466
BsmAI	GTCTC	2 cut(s)	25, 64
BsmFI	GGGAC	1 cut(s)	225
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	5, 423, 458
Bsp120I	GGGCCC	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	460
BspACI	CCGC	4 cut(s)	80, 98, 148, 317
BspANI	GGCC	3 cut(s)	5, 423, 458
BspCNI	CTCAG	2 cut(s)	57, 241
BspFNI	CGCG	1 cut(s)	319
BspLI	GGNNCC	3 cut(s)	315, 457, 458
BspMAI	CTGCAG	1 cut(s)	134
BspMI	ACCTGC	1 cut(s)	421
BspT107I	GGYRCC	1 cut(s)	313
BsrFI	RCCGGY	1 cut(s)	76
BssAI	RCCGGY	1 cut(s)	76
BssNI	GRCGYC	1 cut(s)	363
BstACI	GRCGYC	1 cut(s)	363
BstAPI	GCANNNNNTGC	1 cut(s)	144
BstC8I	GCNNGC	3 cut(s)	78, 103, 281
BstDEI	CTNAG	3 cut(s)	33, 65, 228
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	208
BstFNI	CGCG	1 cut(s)	319
BstMAI	GTCTC	2 cut(s)	25, 64
BstMWI	GCNNNNNNNGC	3 cut(s)	98, 144, 420
BstNSI	RCATGY	1 cut(s)	96
BstSFI	CTRYAG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	460
BstUI	CGCG	1 cut(s)	319
BstV2I	GAAGAC	2 cut(s)	19, 295
BsuRI	GGCC	3 cut(s)	5, 423, 458
BtsCI	GGATG	1 cut(s)	208
BveI	ACCTGC	1 cut(s)	421
Cac8I	GCNNGC	3 cut(s)	78, 103, 281
CaiI	CAGNNNCTG	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	76
Cfr13I	GGNCC	2 cut(s)	456, 457
CseI	GACGC	1 cut(s)	352
Csp6I	GTAC	1 cut(s)	314
CviAII	CATG	3 cut(s)	93, 268, 471
CviQI	GTAC	1 cut(s)	314
DdeI	CTNAG	3 cut(s)	33, 65, 228
EaeI	YGGCCR	1 cut(s)	3
Eco24I	GRGCYC	1 cut(s)	460
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoO109I	RGGNCCY	1 cut(s)	456
EcoT38I	GRGCYC	1 cut(s)	460
FaeI	CATG	3 cut(s)	96, 271, 474
FaiI	YATR	5 cut(s)	94, 170, 269, 428, 472
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	3 cut(s)	92, 267, 470
Fnu4HI	GCNGC	2 cut(s)	99, 148
FokI	GGATG	1 cut(s)	215
FriOI	GRGCYC	1 cut(s)	460
Fsp4HI	GCNGC	2 cut(s)	99, 148
GluI	GCNGC	2 cut(s)	99, 148
GsaI	CCCAGC	1 cut(s)	375
HaeIII	GGCC	3 cut(s)	5, 423, 458
HapII	CCGG	1 cut(s)	77
HgaI	GACGC	1 cut(s)	352
Hin1I	GRCGYC	1 cut(s)	363
Hin1II	CATG	3 cut(s)	96, 271, 474
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	77
HphI	GGTGA	2 cut(s)	49, 445
Hpy166II	GTNNAC	4 cut(s)	40, 178, 259, 401
Hpy188I	TCNGA	1 cut(s)	66
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	4 cut(s)	40, 178, 259, 401
Hpy99I	CGWCG	2 cut(s)	47, 368
HpyAV	CCTTC	1 cut(s)	5
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	4 cut(s)	92, 132, 251, 430
HpyF10VI	GCNNNNNNNGC	3 cut(s)	98, 144, 420
HpyF3I	CTNAG	3 cut(s)	33, 65, 228
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	363
Hsp92II	CATG	3 cut(s)	96, 271, 474
KpnI	GGTACC	1 cut(s)	317
KroI	GCCGGC	1 cut(s)	76
KroNI	GCCGGC	1 cut(s)	78
LpnPI	CCDG	5 cut(s)	90, 195, 202, 357, 416
LweI	GCATC	1 cut(s)	358
MaeII	ACGT	1 cut(s)	410
MboII	GAAGA	2 cut(s)	19, 295
MfeI	CAATTG	1 cut(s)	252
MhlI	GDGCHC	1 cut(s)	460
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	2 cut(s)	252, 443
MluNI	TGGCCA	1 cut(s)	5
MnlI	CCTC	6 cut(s)	60, 187, 199, 211, 305, 385
Mox20I	TGGCCA	1 cut(s)	5
MroNI	GCCGGC	1 cut(s)	76
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	1 cut(s)	266
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	1 cut(s)	77
MunI	CAATTG	1 cut(s)	252
Mva1269I	GAATGC	1 cut(s)	138
MvnI	CGCG	1 cut(s)	319
MwoI	GCNNNNNNNGC	3 cut(s)	98, 144, 420
NaeI	GCCGGC	1 cut(s)	78
NgoMIV	GCCGGC	1 cut(s)	76
NlaIII	CATG	3 cut(s)	96, 271, 474
NlaIV	GGNNCC	3 cut(s)	315, 457, 458
NspI	RCATGY	1 cut(s)	96
PaqCI	CACCTGC	1 cut(s)	421
PctI	GAATGC	1 cut(s)	138
PdiI	GCCGGC	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	235
PflMI	CCANNNNNTGG	1 cut(s)	466
PkrI	GCNGC	2 cut(s)	100, 149
PspFI	CCCAGC	1 cut(s)	371
PspN4I	GGNNCC	3 cut(s)	315, 457, 458
PspOMI	GGGCCC	1 cut(s)	456
PspPI	GGNCC	2 cut(s)	456, 457
PstI	CTGCAG	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	129
RsaI	GTAC	1 cut(s)	315
RsaNI	GTAC	1 cut(s)	314
RseI	CAYNNNNRTG	1 cut(s)	266
SatI	GCNGC	2 cut(s)	99, 148
Sau96I	GGNCC	2 cut(s)	456, 457
SduI	GDGCHC	1 cut(s)	460
SfaNI	GCATC	1 cut(s)	358
SfcI	CTRYAG	1 cut(s)	130
SmiMI	CAYNNNNRTG	1 cut(s)	266
Sse9I	AATT	2 cut(s)	252, 443
SsiI	CCGC	4 cut(s)	80, 98, 148, 317
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	366
TasI	AATT	2 cut(s)	252, 443
TauI	GCSGC	2 cut(s)	101, 150
TfiI	GAWTC	1 cut(s)	235
TspDTI	ATGAA	1 cut(s)	396
Van91I	CCANNNNNTGG	1 cut(s)	466
XagI	CCTNNNNNAGG	1 cut(s)	428
XceI	RCATGY	1 cut(s)	96

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.