Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0010565

Physical Location & Seq

Genomic Coordinates Reverse (-)

45868370 .. 45871670

Gene Structure 3301 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1336900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGTTCCCCAAGGTTGCGTTGAAGGAGGTTATCGAGAAGGTTCTCGCTGAGCCGATACGGCTTCAGTTCGTTGTGGCTAATATTGGAACTGGGTTTTCATCGAATCTCTTGCACAGATCAAACACAAGCATACACATCAAACCATGCATTCACAGAGCAGGCGCCAAAAAACCATCATTGAGTTTGGACTCCTATCGCAGCATCATCATTTGCTCTTGCAGCTGCTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box FIST FIST_C

Protein Analysis

77

Amino Acids

8.39

Weight (kDa)

9.56

Isoelectric Point (pI)

52.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010565)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g08570
malus_domestica	MD00G1199400.v1.1 MD05G1336900.v1.1 MD06G1139000.v1.1 MD06G1139500.v1.1 MD14G1155100.v1.1
prunus_persica	Prupe.5G149100_v2.0.a1
pyrus_communis	pycom14g12890
rosa_laevigata	RLG00000004584
rosa_roxburghii	Rroxscaffold_3G00265110 Rroxscaffold_3G00265120
rosa_rugosa	Rorug06G0500100 Rorug06G0500200 Rorug06G0500200 Rorug06G0500300
rosa_samantha	Rh7AG105400 Rh7BG108200 Rh7CG110200 Rh7DG108400 Rh7DG108500
rosa_wichuraiana	Rw7G009130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	161
AcuI	CTGAAG	1 cut(s)	47
AcyI	GRCGYC	1 cut(s)	162
AgsI	TTSAA	1 cut(s)	22
AluBI	AGCT	1 cut(s)	222
AluI	AGCT	1 cut(s)	222
ApeKI	GCWGC	3 cut(s)	198, 219, 222
AspLEI	GCGC	1 cut(s)	164
BanI	GGYRCC	1 cut(s)	161
BbvI	GCAGC	2 cut(s)	209, 210
BccI	CCATC	1 cut(s)	181
BceAI	ACGGC	1 cut(s)	74
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BfoI	RGCGCY	1 cut(s)	165
BglI	GCCNNNNNGGC	1 cut(s)	58
BisI	GCNGC	3 cut(s)	199, 220, 223
BlpI	GCTNAGC	1 cut(s)	48
BlsI	GCNGC	3 cut(s)	200, 221, 224
BmiI	GGNNCC	1 cut(s)	163
BmrI	ACTGGG	1 cut(s)	99
BmsI	GCATC	1 cut(s)	210
BmuI	ACTGGG	1 cut(s)	99
Bpu1102I	GCTNAGC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	162
BsaJI	CCNNGG	1 cut(s)	9
Bse1I	ACTGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	9
BseMII	CTCAG	1 cut(s)	39
BseNI	ACTGG	1 cut(s)	94
BseXI	GCAGC	2 cut(s)	209, 210
BshNI	GGYRCC	1 cut(s)	161
BsmI	GAATGC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	116
Bsp1720I	GCTNAGC	1 cut(s)	48
BspCNI	CTCAG	1 cut(s)	40
BspLI	GGNNCC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	94
BssECI	CCNNGG	1 cut(s)	9
BssMI	GATC	1 cut(s)	116
BssNI	GRCGYC	1 cut(s)	162
BssT1I	CCWWGG	1 cut(s)	9
BstACI	GRCGYC	1 cut(s)	162
BstC8I	GCNNGC	1 cut(s)	160
BstDEI	CTNAG	1 cut(s)	48
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	1 cut(s)	164
BstKTI	GATC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	116
BstMWI	GCNNNNNNNGC	2 cut(s)	58, 219
BstV1I	GCAGC	2 cut(s)	209, 210
Cac8I	GCNNGC	1 cut(s)	160
CfoI	GCGC	1 cut(s)	164
CviAII	CATG	1 cut(s)	144
CviJI	RGCY	4 cut(s)	52, 61, 77, 222
CviKI_1	RGCY	4 cut(s)	52, 61, 77, 222
DdeI	CTNAG	1 cut(s)	48
DinI	GGCGCC	1 cut(s)	163
DpnI	GATC	1 cut(s)	118
DpnII	GATC	1 cut(s)	116
Eco130I	CCWWGG	1 cut(s)	9
Eco57I	CTGAAG	1 cut(s)	47
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	149
EgeI	GGCGCC	1 cut(s)	163
EheI	GGCGCC	1 cut(s)	163
ErhI	CCWWGG	1 cut(s)	9
FaeI	CATG	1 cut(s)	147
FaiI	YATR	2 cut(s)	131, 145
FatI	CATG	1 cut(s)	143
Fnu4HI	GCNGC	3 cut(s)	199, 220, 223
Fsp4HI	GCNGC	3 cut(s)	199, 220, 223
GlaI	GCGC	1 cut(s)	163
GluI	GCNGC	3 cut(s)	199, 220, 223
HaeII	RGCGCY	1 cut(s)	165
HhaI	GCGC	1 cut(s)	164
Hin1I	GRCGYC	1 cut(s)	162
Hin1II	CATG	1 cut(s)	147
Hin6I	GCGC	1 cut(s)	162
HinP1I	GCGC	1 cut(s)	162
HinfI	GANTC	2 cut(s)	103, 188
Hpy188III	TCNNGA	1 cut(s)	34
HpyAV	CCTTC	2 cut(s)	16, 31
HpyCH4V	TGCA	3 cut(s)	112, 147, 219
HpyF10VI	GCNNNNNNNGC	2 cut(s)	58, 219
HpyF3I	CTNAG	1 cut(s)	48
Hsp92I	GRCGYC	1 cut(s)	162
Hsp92II	CATG	1 cut(s)	147
HspAI	GCGC	1 cut(s)	162
KasI	GGCGCC	1 cut(s)	161
Kzo9I	GATC	1 cut(s)	116
LpnPI	CCDG	2 cut(s)	75, 144
Lsp1109I	GCAGC	2 cut(s)	209, 210
LweI	GCATC	1 cut(s)	210
MalI	GATC	1 cut(s)	118
MboI	GATC	1 cut(s)	116
Mly113I	GGCGCC	1 cut(s)	162
MlyI	GAGTC	1 cut(s)	182
MnlI	CCTC	1 cut(s)	19
Mph1103I	ATGCAT	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	222
Mva1269I	GAATGC	1 cut(s)	147
MwoI	GCNNNNNNNGC	2 cut(s)	58, 219
NarI	GGCGCC	1 cut(s)	162
NdeII	GATC	1 cut(s)	116
NlaIII	CATG	1 cut(s)	147
NlaIV	GGNNCC	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	149
PctI	GAATGC	1 cut(s)	147
PfeI	GAWTC	1 cut(s)	103
PkrI	GCNGC	3 cut(s)	200, 221, 224
PleI	GAGTC	1 cut(s)	182
PluTI	GGCGCC	1 cut(s)	165
PpsI	GAGTC	1 cut(s)	182
PspN4I	GGNNCC	1 cut(s)	163
PvuII	CAGCTG	1 cut(s)	222
SatI	GCNGC	3 cut(s)	199, 220, 223
Sau3AI	GATC	1 cut(s)	116
SchI	GAGTC	1 cut(s)	182
SetI	ASST	4 cut(s)	15, 30, 42, 224
SfaNI	GCATC	1 cut(s)	210
SfoI	GGCGCC	1 cut(s)	163
SgeI	CNNG	8 cut(s)	22, 46, 56, 102, 121, 138, 156, 171
SspDI	GGCGCC	1 cut(s)	161
SspI	AATATT	1 cut(s)	82
StyI	CCWWGG	1 cut(s)	9
TaqI	TCGA	2 cut(s)	33, 101
TfiI	GAWTC	1 cut(s)	103
TseI	GCWGC	3 cut(s)	198, 219, 222
TspDTI	ATGAA	1 cut(s)	87
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.