MD01G1004500.v1.1

NAD(P)H-quinone oxidoreductase subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0004593
Physical Location & Seq
Reverse (-)
1482922 .. 1483170
249 bp
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UTR
Exon/CDS
Intron
MD01G1004500.v1.1.491

Sequence Viewer

Length: 249 bp
ATGGCTATAACAGAGTTTCTGTTATTCCTATTAATACCTACTCTAGGAGGAATGTTTTTATGTAGTGATAATGATTTAATGACTATCTTTGTAGCTCTAGAATGTTTCGGTTTACACTCTTGCCTATTATTTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTATGAAGTATTTACTCATGGGTGGGGCAAGCTTTTCTATTATGGTATGCACACAAATGTGTAACTCCCCAGGAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko03010 map00190 map01100 map03010
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

83

Amino Acids

9.03

Weight (kDa)

4.95

Isoelectric Point (pI)

37.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 24 - 73 3.1e-09 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 243
AfaI GTAC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 44
AjnI CCWGG 1 cut(s) 238
AleI CACNNNNGTG 1 cut(s) 226
AluBI AGCT 2 cut(s) 95, 201
AluI AGCT 2 cut(s) 95, 201
ApoI RAATTY 1 cut(s) 243
AseI ATTAAT 1 cut(s) 32
BciT130I CCWGG 1 cut(s) 240
BfaI CTAG 2 cut(s) 44, 98
Bme1390I CCNGG 1 cut(s) 240
BmrFI CCNGG 1 cut(s) 240
BsaJI CCNNGG 1 cut(s) 238
Bsc4I CCNNNNNNNGG 1 cut(s) 44
BseBI CCWGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 238
BseLI CCNNNNNNNGG 1 cut(s) 44
BslI CCNNNNNNNGG 1 cut(s) 44
BssECI CCNNGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 240
Bst4CI ACNGT 1 cut(s) 156
BstC8I GCNNGC 1 cut(s) 199
BstENI CCTNNNNNAGG 1 cut(s) 42
BstNI CCWGG 1 cut(s) 240
BstSCI CCNGG 1 cut(s) 238
Cac8I GCNNGC 1 cut(s) 199
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 187
CviJI RGCY 4 cut(s) 5, 95, 167, 201
CviKI_1 RGCY 4 cut(s) 5, 95, 167, 201
CviQI GTAC 1 cut(s) 152
EcoNI CCTNNNNNAGG 1 cut(s) 42
EcoRII CCWGG 1 cut(s) 238
FaeI CATG 1 cut(s) 190
FaiI YATR 7 cut(s) 8, 61, 138, 173, 188, 212, 217
FatI CATG 1 cut(s) 186
FspBI CTAG 2 cut(s) 44, 98
Hin1II CATG 1 cut(s) 190
HindIII AAGCTT 1 cut(s) 199
Hpy166II GTNNAC 1 cut(s) 113
Hpy188III TCNNGA 1 cut(s) 98
Hpy8I GTNNAC 1 cut(s) 113
HpyCH4III ACNGT 1 cut(s) 156
HpyCH4V TGCA 1 cut(s) 219
Hsp92II CATG 1 cut(s) 190
LpnPI CCDG 1 cut(s) 225
MaeI CTAG 2 cut(s) 44, 98
MaeIII GTNAC 1 cut(s) 230
MluCI AATT 1 cut(s) 243
MnlI CCTC 2 cut(s) 41, 157
MseI TTAA 2 cut(s) 32, 77
MslI CAYNNNNRTG 2 cut(s) 224, 226
MspR9I CCNGG 1 cut(s) 240
MvaI CCWGG 1 cut(s) 240
NlaIII CATG 1 cut(s) 190
OliI CACNNNNGTG 1 cut(s) 226
PshBI ATTAAT 1 cut(s) 32
Psp6I CCWGG 1 cut(s) 238
PspGI CCWGG 1 cut(s) 238
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
RseI CAYNNNNRTG 2 cut(s) 224, 226
SaqAI TTAA 2 cut(s) 32, 77
ScrFI CCNGG 1 cut(s) 240
SetI ASST 3 cut(s) 40, 97, 203
SgeI CNNG 6 cut(s) 56, 110, 132, 154, 199, 210
SmiMI CAYNNNNRTG 2 cut(s) 224, 226
Sse9I AATT 1 cut(s) 243
SspMI CTAG 2 cut(s) 44, 98
StyD4I CCNGG 1 cut(s) 238
TaaI ACNGT 1 cut(s) 156
TasI AATT 1 cut(s) 243
Tru1I TTAA 2 cut(s) 32, 77
Tru9I TTAA 2 cut(s) 32, 77
TspDTI ATGAA 1 cut(s) 188
VspI ATTAAT 1 cut(s) 32
XagI CCTNNNNNAGG 1 cut(s) 42
XapI RAATTY 1 cut(s) 243
XbaI TCTAGA 1 cut(s) 97
XspI CTAG 2 cut(s) 44, 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.