Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0004593

Physical Location & Seq

Genomic Coordinates Reverse (-)

1483237 .. 1483485

Gene Structure 249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1004600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 249 bp

ATGAAGGCCTTTCATTTCCTTCTCTTCGATGGAAGTTTAATTTTCCAAGAATGTATTCTAATTTTTGGCCTAATTCTTCCTCTGATGATTGATTCAACCTTTGATAAAAAAGATATACCTTGGTTAAATTTCATCTTTTCAACAAGTTTAATAATGAGCATAACGCCCCTATTGTTCCGATGGAGAAAAGAACCTACAATTAGCTTTTGGGGAAATTTCCAAACGAACAATTTCAACGAAATCTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko03010 map00190 map01100 map03010

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

83

Amino Acids

9.77

Weight (kDa)

5.59

Isoelectric Point (pI)

37.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndh2_N	PF19530	1 - 82	4.1e-33	NAD(P)H-quinone oxidoreductase subunit 2 N-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004593)

Species	Orthologous Gene IDs
malus_domestica	MD01G1004500.v1.1 MD01G1004600.v1.1 MD06G1091100.v1.1
pyrus_communis	pycom12397g00070 pycom12397g00130 pycom17g22000
rosa_chinensis	RchiOBHm_Chr2g0118391 RchiOBHm_Chr5g0051091 RchiOBHm_CPg0501751 RchiOBHm_CPg0502661 RchiOBHm_MTg0498521
rosa_laevigata	RLG00000000002 RLG00000000005 RLG00000000029 RLG00000000038 RLG00000000061 RLG00000000096 RLG00000000103 RLG00000000183 RLG00000000212 RLG00000000241 RLG00000000302 RLG00000000304 RLG00000037094 RLG00000037113 RLG00000037117
rosa_multiflora	Rmu_sc0006632.1_g000001
rosa_rugosa	RorugMtG0003100.1 RorugMtG0003300.1
rosa_samantha	Rh1CG032100 Rh5BG348000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	127, 214
AgsI	TTSAA	3 cut(s)	96, 141, 235
AjuI	GAANNNNNNNTTGG	2 cut(s)	39, 71
AluBI	AGCT	1 cut(s)	204
AluI	AGCT	1 cut(s)	204
AoxI	GGCC	2 cut(s)	6, 67
ApoI	RAATTY	2 cut(s)	127, 214
Asp700I	GAANNNNTTC	2 cut(s)	54, 230
BccI	CCATC	2 cut(s)	23, 174
BsaJI	CCNNGG	1 cut(s)	119
BseDI	CCNNGG	1 cut(s)	119
BshFI	GGCC	2 cut(s)	8, 69
BsnI	GGCC	2 cut(s)	8, 69
BspANI	GGCC	2 cut(s)	8, 69
BssECI	CCNNGG	1 cut(s)	119
BssT1I	CCWWGG	1 cut(s)	119
Bst6I	CTCTTC	1 cut(s)	29
BsuRI	GGCC	2 cut(s)	8, 69
CviJI	RGCY	3 cut(s)	8, 69, 204
CviKI_1	RGCY	3 cut(s)	8, 69, 204
Eam1104I	CTCTTC	1 cut(s)	29
EarI	CTCTTC	1 cut(s)	29
Eco130I	CCWWGG	1 cut(s)	119
Eco147I	AGGCCT	1 cut(s)	8
EcoT14I	CCWWGG	1 cut(s)	119
ErhI	CCWWGG	1 cut(s)	119
FaiI	YATR	2 cut(s)	116, 161
HaeIII	GGCC	2 cut(s)	8, 69
HinfI	GANTC	1 cut(s)	92
Hpy188I	TCNGA	2 cut(s)	84, 179
HpyAV	CCTTC	1 cut(s)	29
MboII	GAAGA	2 cut(s)	16, 68
MluCI	AATT	7 cut(s)	39, 60, 72, 127, 198, 214, 229
MnlI	CCTC	1 cut(s)	90
MroXI	GAANNNNTTC	2 cut(s)	54, 230
MseI	TTAA	4 cut(s)	38, 125, 149, 247
PceI	AGGCCT	1 cut(s)	8
PdmI	GAANNNNTTC	2 cut(s)	54, 230
PfeI	GAWTC	1 cut(s)	92
SaqAI	TTAA	4 cut(s)	38, 125, 149, 247
SetI	ASST	4 cut(s)	101, 121, 196, 206
SgeI	CNNG	3 cut(s)	59, 132, 156
Sse9I	AATT	7 cut(s)	39, 60, 72, 127, 198, 214, 229
SseBI	AGGCCT	1 cut(s)	8
StuI	AGGCCT	1 cut(s)	8
StyI	CCWWGG	1 cut(s)	119
TaqI	TCGA	1 cut(s)	27
TasI	AATT	7 cut(s)	39, 60, 72, 127, 198, 214, 229
TfiI	GAWTC	1 cut(s)	92
Tru1I	TTAA	4 cut(s)	38, 125, 149, 247
Tru9I	TTAA	4 cut(s)	38, 125, 149, 247
TspDTI	ATGAA	2 cut(s)	17, 121
XapI	RAATTY	2 cut(s)	127, 214
XmnI	GAANNNNTTC	2 cut(s)	54, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.