Rh5BG348000

Proton-conducting membrane transporter

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5B
Physical Location & Seq
Forward (+)
53242863 .. 53243657
795 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5BG348000.1

Sequence Viewer

Length: 795 bp
ATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCCAGAATGTATCCTAATTTTTGGCCTAGTTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCATAACAGCCCTATTGTTCCAATGGAGAGAAGAACCTACGATTAGCTTTTCGGGAAATTTTCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAGTATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCACGGTTTCTCTTGGCTATATGGTTCATCCGGGGGGGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

264

Amino Acids

29.66

Weight (kDa)

4.59

Isoelectric Point (pI)

38.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndh2_N PF19530 18 - 117 4.6e-51 NAD(P)H-quinone oxidoreductase subunit 2 N-terminal
Proton_antipo_M PF00361 146 - 259 1.3e-29 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 768
AciI CCGC 2 cut(s) 432, 781
AcsI RAATTY 3 cut(s) 48, 268, 684
AfaI GTAC 4 cut(s) 15, 353, 364, 522
AjnI CCWGG 1 cut(s) 679
AluBI AGCT 6 cut(s) 258, 407, 464, 570, 631, 730
AluI AGCT 6 cut(s) 258, 407, 464, 570, 631, 730
AoxI GGCC 1 cut(s) 121
ApoI RAATTY 3 cut(s) 48, 268, 684
Asp700I GAANNNNTTC 2 cut(s) 284, 297
AspLEI GCGC 1 cut(s) 697
AsuC2I CCSGG 1 cut(s) 616
BccI CCATC 1 cut(s) 77
BciT130I CCWGG 1 cut(s) 681
BciVI GTATCC 1 cut(s) 119
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 616
BfaI CTAG 3 cut(s) 125, 413, 737
BfmI CTRYAG 1 cut(s) 711
BfuI GTATCC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 616, 681
BmrFI CCNGG 2 cut(s) 616, 681
BpmI CTGGAG 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 616
Bsa29I ATCGAT 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 173, 615, 679
BseBI CCWGG 1 cut(s) 681
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 173, 615, 679
BseGI GGATG 1 cut(s) 611
BshFI GGCC 1 cut(s) 123
BshVI ATCGAT 1 cut(s) 144
BsiSI CCGG 1 cut(s) 615
BsnI GGCC 1 cut(s) 123
Bsp1407I TGTACA 2 cut(s) 13, 362
Bsp143I GATC 4 cut(s) 3, 141, 157, 624
BspACI CCGC 2 cut(s) 432, 781
BspANI GGCC 1 cut(s) 123
BspDI ATCGAT 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 577
BsrGI TGTACA 2 cut(s) 13, 362
BssECI CCNNGG 3 cut(s) 173, 615, 679
BssMI GATC 4 cut(s) 3, 141, 157, 624
BssNAI GTATAC 1 cut(s) 769
BssT1I CCWWGG 1 cut(s) 173
Bst1107I GTATAC 1 cut(s) 769
Bst2UI CCWGG 1 cut(s) 681
Bst4CI ACNGT 3 cut(s) 525, 590, 712
Bst6I CTCTTC 3 cut(s) 83, 196, 577
BstAUI TGTACA 2 cut(s) 13, 362
BstC8I GCNNGC 1 cut(s) 568
BstF5I GGATG 1 cut(s) 611
BstHHI GCGC 1 cut(s) 697
BstKTI GATC 4 cut(s) 6, 144, 160, 627
BstMBI GATC 4 cut(s) 3, 141, 157, 624
BstNI CCWGG 1 cut(s) 681
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 614, 679
BstSFI CTRYAG 1 cut(s) 711
BstZ17I GTATAC 1 cut(s) 769
Bsu15I ATCGAT 1 cut(s) 144
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 1 cut(s) 123
BsuTUI ATCGAT 1 cut(s) 144
BtsCI GGATG 1 cut(s) 611
BtsIMutI CAGTG 1 cut(s) 708
Cac8I GCNNGC 1 cut(s) 568
CfoI GCGC 1 cut(s) 697
ClaI ATCGAT 1 cut(s) 144
Csp6I GTAC 4 cut(s) 14, 352, 363, 521
CviAII CATG 2 cut(s) 11, 556
CviQI GTAC 4 cut(s) 14, 352, 363, 521
DpnI GATC 4 cut(s) 5, 143, 159, 626
DpnII GATC 4 cut(s) 3, 141, 157, 624
Eam1104I CTCTTC 3 cut(s) 83, 196, 577
EarI CTCTTC 3 cut(s) 83, 196, 577
Eco130I CCWWGG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 679
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 2 cut(s) 14, 559
FatI CATG 2 cut(s) 10, 555
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 768
FokI GGATG 1 cut(s) 598
FspBI CTAG 3 cut(s) 125, 413, 737
GlaI GCGC 1 cut(s) 696
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 1 cut(s) 123
HapII CCGG 1 cut(s) 615
HhaI GCGC 1 cut(s) 697
Hin1II CATG 2 cut(s) 14, 559
Hin6I GCGC 1 cut(s) 695
HinP1I GCGC 1 cut(s) 695
HindIII AAGCTT 1 cut(s) 728
HinfI GANTC 3 cut(s) 38, 146, 757
HpaII CCGG 1 cut(s) 615
Hpy166II GTNNAC 2 cut(s) 586, 769
Hpy188I TCNGA 2 cut(s) 138, 157
Hpy188III TCNNGA 6 cut(s) 35, 264, 467, 501, 635, 761
Hpy8I GTNNAC 2 cut(s) 586, 769
HpyAV CCTTC 2 cut(s) 753, 767
HpyCH4III ACNGT 3 cut(s) 525, 590, 712
HpyCH4IV ACGT 1 cut(s) 765
HpySE526I ACGT 1 cut(s) 765
Hsp92II CATG 2 cut(s) 14, 559
HspAI GCGC 1 cut(s) 695
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 4 cut(s) 3, 141, 157, 624
LguI GCTCTTC 1 cut(s) 577
LmnI GCTCC 2 cut(s) 469, 491
LpnPI CCDG 8 cut(s) 114, 480, 486, 566, 628, 666, 693, 774
MaeI CTAG 3 cut(s) 125, 413, 737
MaeII ACGT 1 cut(s) 765
MalI GATC 4 cut(s) 5, 143, 159, 626
MboI GATC 4 cut(s) 3, 141, 157, 624
MboII GAAGA 6 cut(s) 70, 122, 125, 183, 254, 564
MfeI CAATTG 1 cut(s) 690
MluCI AATT 8 cut(s) 48, 114, 268, 283, 302, 684, 690, 717
MlyI GAGTC 1 cut(s) 751
MnlI CCTC 4 cut(s) 163, 348, 410, 526
MroXI GAANNNNTTC 2 cut(s) 284, 297
MseI TTAA 2 cut(s) 401, 446
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 2 cut(s) 616, 681
MunI CAATTG 1 cut(s) 690
MvaI CCWGG 1 cut(s) 681
NciI CCSGG 1 cut(s) 616
NdeII GATC 4 cut(s) 3, 141, 157, 624
NlaIII CATG 2 cut(s) 14, 559
NspI RCATGY 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 577
PdmI GAANNNNTTC 2 cut(s) 284, 297
PfeI GAWTC 2 cut(s) 38, 146
PleI GAGTC 1 cut(s) 751
PpsI GAGTC 1 cut(s) 751
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
RsaI GTAC 4 cut(s) 15, 353, 364, 522
RsaNI GTAC 4 cut(s) 14, 352, 363, 521
SapI GCTCTTC 1 cut(s) 577
SaqAI TTAA 2 cut(s) 401, 446
Sau3AI GATC 4 cut(s) 3, 141, 157, 624
SchI GAGTC 1 cut(s) 751
ScrFI CCNGG 2 cut(s) 616, 681
SfcI CTRYAG 1 cut(s) 711
Sse9I AATT 8 cut(s) 48, 114, 268, 283, 302, 684, 690, 717
SsiI CCGC 2 cut(s) 432, 781
SspMI CTAG 3 cut(s) 125, 413, 737
StyD4I CCNGG 2 cut(s) 614, 679
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 3 cut(s) 525, 590, 712
TaiI ACGT 1 cut(s) 768
TaqI TCGA 5 cut(s) 36, 81, 144, 627, 790
TasI AATT 8 cut(s) 48, 114, 268, 283, 302, 684, 690, 717
TatI WGTACW 3 cut(s) 13, 351, 362
TfiI GAWTC 2 cut(s) 38, 146
Tru1I TTAA 2 cut(s) 401, 446
Tru9I TTAA 2 cut(s) 401, 446
TscAI CASTG 1 cut(s) 715
TspDTI ATGAA 7 cut(s) 19, 36, 56, 71, 175, 600, 694
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 1 cut(s) 715
XapI RAATTY 3 cut(s) 48, 268, 684
XceI RCATGY 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 768
XmnI GAANNNNTTC 2 cut(s) 284, 297
XspI CTAG 3 cut(s) 125, 413, 737
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.