MD06G1091100.v1.1

Proton-conducting membrane transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0004593
Physical Location & Seq
Forward (+)
21989587 .. 21990357
771 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1091100.v1.1.491

Sequence Viewer

Length: 237 bp
ATGGGTGGGGCAAGCTCTTCTATTTTGGTTCACGGTTTCTCTTGGCTATATGGTTCATCCAGGGAAGAGATTCAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAATTCCCCAGGAATTTCAATTACGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCCAGACCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCAATTCGTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 map00190 map01100
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

79

Amino Acids

8.56

Weight (kDa)

4.63

Isoelectric Point (pI)

36.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 2 - 74 1.7e-12 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 213
AcsI RAATTY 1 cut(s) 129
AgsI TTSAA 3 cut(s) 80, 135, 172
AjnI CCWGG 2 cut(s) 59, 124
AluBI AGCT 3 cut(s) 15, 76, 175
AluI AGCT 3 cut(s) 15, 76, 175
ApoI RAATTY 1 cut(s) 129
Asp700I GAANNNNTTC 1 cut(s) 69
BciT130I CCWGG 2 cut(s) 61, 126
BfmI CTRYAG 1 cut(s) 156
Bme1390I CCNGG 2 cut(s) 61, 126
BmrFI CCNGG 2 cut(s) 61, 126
BsaJI CCNNGG 2 cut(s) 60, 124
BseBI CCWGG 2 cut(s) 61, 126
BseDI CCNNGG 2 cut(s) 60, 124
BseGI GGATG 1 cut(s) 56
BspQI GCTCTTC 1 cut(s) 22
BssECI CCNNGG 2 cut(s) 60, 124
BssNAI GTATAC 1 cut(s) 214
Bst1107I GTATAC 1 cut(s) 214
Bst2UI CCWGG 2 cut(s) 61, 126
Bst4CI ACNGT 2 cut(s) 35, 157
Bst6I CTCTTC 2 cut(s) 22, 60
BstC8I GCNNGC 1 cut(s) 13
BstF5I GGATG 1 cut(s) 56
BstNI CCWGG 2 cut(s) 61, 126
BstSCI CCNGG 2 cut(s) 59, 124
BstSFI CTRYAG 1 cut(s) 156
BstZ17I GTATAC 1 cut(s) 214
BtsCI GGATG 1 cut(s) 56
BtsIMutI CAGTG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 13
CviJI RGCY 4 cut(s) 15, 46, 76, 175
CviKI_1 RGCY 4 cut(s) 15, 46, 76, 175
Eam1104I CTCTTC 2 cut(s) 22, 60
EarI CTCTTC 2 cut(s) 22, 60
EcoRII CCWGG 2 cut(s) 59, 124
FaiI YATR 5 cut(s) 49, 51, 117, 146, 214
FblI GTMKAC 1 cut(s) 213
FokI GGATG 1 cut(s) 43
HindIII AAGCTT 1 cut(s) 173
HinfI GANTC 2 cut(s) 70, 202
Hpy166II GTNNAC 2 cut(s) 31, 214
Hpy188III TCNNGA 2 cut(s) 80, 206
Hpy8I GTNNAC 2 cut(s) 31, 214
HpyAV CCTTC 2 cut(s) 198, 212
HpyCH4III ACNGT 2 cut(s) 35, 157
HpyCH4IV ACGT 1 cut(s) 210
HpyCH4V TGCA 1 cut(s) 226
HpySE526I ACGT 1 cut(s) 210
LguI GCTCTTC 1 cut(s) 22
LpnPI CCDG 6 cut(s) 46, 73, 111, 138, 195, 219
MaeII ACGT 1 cut(s) 210
MboII GAAGA 2 cut(s) 9, 77
MluCI AATT 5 cut(s) 118, 129, 135, 162, 227
MlyI GAGTC 1 cut(s) 196
MroXI GAANNNNTTC 1 cut(s) 69
MspR9I CCNGG 2 cut(s) 61, 126
MvaI CCWGG 2 cut(s) 61, 126
PciSI GCTCTTC 1 cut(s) 22
PdmI GAANNNNTTC 1 cut(s) 69
PfeI GAWTC 1 cut(s) 70
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
Psp6I CCWGG 2 cut(s) 59, 124
PspGI CCWGG 2 cut(s) 59, 124
SapI GCTCTTC 1 cut(s) 22
SchI GAGTC 1 cut(s) 196
ScrFI CCNGG 2 cut(s) 61, 126
SetI ASST 4 cut(s) 17, 78, 177, 213
SfcI CTRYAG 1 cut(s) 156
Sse9I AATT 5 cut(s) 118, 129, 135, 162, 227
StyD4I CCNGG 2 cut(s) 59, 124
TaaI ACNGT 2 cut(s) 35, 157
TaiI ACGT 1 cut(s) 213
TasI AATT 5 cut(s) 118, 129, 135, 162, 227
TfiI GAWTC 1 cut(s) 70
TscAI CASTG 1 cut(s) 160
TspDTI ATGAA 2 cut(s) 45, 139
TspRI CASTG 1 cut(s) 160
XapI RAATTY 1 cut(s) 129
XmiI GTMKAC 1 cut(s) 213
XmnI GAANNNNTTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.