Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Unknown

Orthogroup ID

OG0004593

Physical Location & Seq

Genomic Coordinates Reverse (-)

494105 .. 494758

Gene Structure 654 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000000096

Sequence Viewer

CDS Protein Promoter (2k)

Length: 588 bp

ATGAGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTACGATTAGCTTTTCGGGAAATTTTCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACATTGAATGTACAGAAATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAGTATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCACGGTTTCTCTTGGCTATATGGTTCATCCGGGGGGGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

196

Amino Acids

21.62

Weight (kDa)

4.72

Isoelectric Point (pI)

40.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ndh2_N	PF19530	1 - 48	3.4e-20	NAD(P)H-quinone oxidoreductase subunit 2 N-terminal
Proton_antipo_M	PF00361	77 - 190	6.2e-30	NADH:quinone oxidoreductase/Mrp antiporter, TM

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004593)

Species	Orthologous Gene IDs
malus_domestica	MD01G1004500.v1.1 MD01G1004600.v1.1 MD06G1091100.v1.1
pyrus_communis	pycom12397g00070 pycom12397g00130 pycom17g22000
rosa_chinensis	RchiOBHm_Chr2g0118391 RchiOBHm_Chr5g0051091 RchiOBHm_CPg0501751 RchiOBHm_CPg0502661 RchiOBHm_MTg0498521
rosa_laevigata	RLG00000000002 RLG00000000005 RLG00000000029 RLG00000000038 RLG00000000061 RLG00000000096 RLG00000000103 RLG00000000183 RLG00000000212 RLG00000000241 RLG00000000302 RLG00000000304 RLG00000037094 RLG00000037113 RLG00000037117
rosa_multiflora	Rmu_sc0006632.1_g000001
rosa_rugosa	RorugMtG0003100.1 RorugMtG0003300.1
rosa_samantha	Rh1CG032100 Rh5BG348000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	561
AciI	CCGC	2 cut(s)	225, 574
AcsI	RAATTY	2 cut(s)	61, 477
AfaI	GTAC	3 cut(s)	146, 157, 315
AgsI	TTSAA	8 cut(s)	68, 82, 95, 117, 152, 428, 483, 520
AjnI	CCWGG	1 cut(s)	472
AluBI	AGCT	6 cut(s)	51, 200, 257, 363, 424, 523
AluI	AGCT	6 cut(s)	51, 200, 257, 363, 424, 523
AoxI	GGCC	1 cut(s)	12
ApoI	RAATTY	2 cut(s)	61, 477
Asp700I	GAANNNNTTC	2 cut(s)	77, 90
AspLEI	GCGC	1 cut(s)	490
AspS9I	GGNCC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	409
BccI	CCATC	1 cut(s)	21
BceAI	ACGGC	1 cut(s)	27
BciT130I	CCWGG	1 cut(s)	474
BcnI	CCSGG	1 cut(s)	409
BfaI	CTAG	2 cut(s)	206, 530
BfmI	CTRYAG	1 cut(s)	504
Bme1390I	CCNGG	2 cut(s)	409, 474
BmgT120I	GGNCC	1 cut(s)	13
BmrFI	CCNGG	2 cut(s)	409, 474
BpmI	CTGGAG	1 cut(s)	243
BpuMI	CCSGG	1 cut(s)	409
BsaJI	CCNNGG	2 cut(s)	408, 472
BseBI	CCWGG	1 cut(s)	474
BseDI	CCNNGG	2 cut(s)	408, 472
BseGI	GGATG	1 cut(s)	404
BshFI	GGCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	408
BsnI	GGCC	1 cut(s)	14
Bsp1407I	TGTACA	1 cut(s)	155
Bsp143I	GATC	1 cut(s)	417
BspACI	CCGC	2 cut(s)	225, 574
BspANI	GGCC	1 cut(s)	14
BspQI	GCTCTTC	1 cut(s)	370
BsrGI	TGTACA	1 cut(s)	155
BssECI	CCNNGG	2 cut(s)	408, 472
BssMI	GATC	1 cut(s)	417
BssNAI	GTATAC	1 cut(s)	562
Bst1107I	GTATAC	1 cut(s)	562
Bst2UI	CCWGG	1 cut(s)	474
Bst4CI	ACNGT	3 cut(s)	318, 383, 505
Bst6I	CTCTTC	1 cut(s)	370
BstAUI	TGTACA	1 cut(s)	155
BstC8I	GCNNGC	1 cut(s)	361
BstF5I	GGATG	1 cut(s)	404
BstHHI	GCGC	1 cut(s)	490
BstKTI	GATC	1 cut(s)	420
BstMBI	GATC	1 cut(s)	417
BstNI	CCWGG	1 cut(s)	474
BstSCI	CCNGG	2 cut(s)	407, 472
BstSFI	CTRYAG	1 cut(s)	504
BstZ17I	GTATAC	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	14
BtsCI	GGATG	1 cut(s)	404
BtsIMutI	CAGTG	1 cut(s)	501
Cac8I	GCNNGC	1 cut(s)	361
CfoI	GCGC	1 cut(s)	490
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	3 cut(s)	145, 156, 314
CviAII	CATG	1 cut(s)	349
CviQI	GTAC	3 cut(s)	145, 156, 314
DpnI	GATC	1 cut(s)	419
DpnII	GATC	1 cut(s)	417
Eam1104I	CTCTTC	1 cut(s)	370
EarI	CTCTTC	1 cut(s)	370
EcoRII	CCWGG	1 cut(s)	472
FaeI	CATG	1 cut(s)	352
FatI	CATG	1 cut(s)	348
FblI	GTMKAC	1 cut(s)	561
FokI	GGATG	1 cut(s)	391
FspBI	CTAG	2 cut(s)	206, 530
GlaI	GCGC	1 cut(s)	489
GsuI	CTGGAG	1 cut(s)	243
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	408
HhaI	GCGC	1 cut(s)	490
Hin1II	CATG	1 cut(s)	352
Hin6I	GCGC	1 cut(s)	488
HinP1I	GCGC	1 cut(s)	488
HindIII	AAGCTT	1 cut(s)	521
HinfI	GANTC	1 cut(s)	550
HpaII	CCGG	1 cut(s)	408
Hpy166II	GTNNAC	2 cut(s)	379, 562
Hpy188I	TCNGA	1 cut(s)	26
Hpy188III	TCNNGA	5 cut(s)	57, 260, 294, 428, 554
Hpy8I	GTNNAC	2 cut(s)	379, 562
HpyAV	CCTTC	2 cut(s)	546, 560
HpyCH4III	ACNGT	3 cut(s)	318, 383, 505
HpyCH4IV	ACGT	1 cut(s)	558
HpySE526I	ACGT	1 cut(s)	558
Hsp92II	CATG	1 cut(s)	352
HspAI	GCGC	1 cut(s)	488
Kzo9I	GATC	1 cut(s)	417
LguI	GCTCTTC	1 cut(s)	370
LmnI	GCTCC	2 cut(s)	262, 284
LpnPI	CCDG	7 cut(s)	273, 279, 359, 421, 459, 486, 567
MaeI	CTAG	2 cut(s)	206, 530
MaeII	ACGT	1 cut(s)	558
MalI	GATC	1 cut(s)	419
MboI	GATC	1 cut(s)	417
MboII	GAAGA	2 cut(s)	47, 357
MfeI	CAATTG	1 cut(s)	483
MluCI	AATT	6 cut(s)	61, 76, 95, 477, 483, 510
MlyI	GAGTC	1 cut(s)	544
MnlI	CCTC	3 cut(s)	141, 203, 319
MroXI	GAANNNNTTC	2 cut(s)	77, 90
MseI	TTAA	2 cut(s)	194, 239
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	2 cut(s)	409, 474
MunI	CAATTG	1 cut(s)	483
MvaI	CCWGG	1 cut(s)	474
NciI	CCSGG	1 cut(s)	409
NdeII	GATC	1 cut(s)	417
NlaIII	CATG	1 cut(s)	352
PciSI	GCTCTTC	1 cut(s)	370
PdmI	GAANNNNTTC	2 cut(s)	77, 90
PleI	GAGTC	1 cut(s)	544
PpsI	GAGTC	1 cut(s)	544
Psp6I	CCWGG	1 cut(s)	472
PspGI	CCWGG	1 cut(s)	472
PspPI	GGNCC	1 cut(s)	13
RsaI	GTAC	3 cut(s)	146, 157, 315
RsaNI	GTAC	3 cut(s)	145, 156, 314
SapI	GCTCTTC	1 cut(s)	370
SaqAI	TTAA	2 cut(s)	194, 239
Sau3AI	GATC	1 cut(s)	417
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	544
ScrFI	CCNGG	2 cut(s)	409, 474
SetI	ASST	9 cut(s)	43, 53, 202, 259, 288, 365, 426, 525, 561
SfcI	CTRYAG	1 cut(s)	504
Sse9I	AATT	6 cut(s)	61, 76, 95, 477, 483, 510
SsiI	CCGC	2 cut(s)	225, 574
SspMI	CTAG	2 cut(s)	206, 530
StyD4I	CCNGG	2 cut(s)	407, 472
TaaI	ACNGT	3 cut(s)	318, 383, 505
TaiI	ACGT	1 cut(s)	561
TaqI	TCGA	2 cut(s)	420, 583
TasI	AATT	6 cut(s)	61, 76, 95, 477, 483, 510
TatI	WGTACW	2 cut(s)	144, 155
Tru1I	TTAA	2 cut(s)	194, 239
Tru9I	TTAA	2 cut(s)	194, 239
TscAI	CASTG	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	393, 487
TspGWI	ACGGA	1 cut(s)	127
TspRI	CASTG	1 cut(s)	508
XapI	RAATTY	2 cut(s)	61, 477
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	2 cut(s)	77, 90
XspI	CTAG	2 cut(s)	206, 530

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.