RLG00000000304

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004593
Physical Location & Seq
Forward (+)
489235 .. 490765
1531 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000000304

Sequence Viewer

Length: 426 bp
ATGGCTATAACAGAGTTTCTGTTATTCGTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAGTATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCACGGTTTCTCTTGGCTATATGGTTCATCCGGGGGGGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATACGAAGGAGTGCGGTTCGTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 map00190 map01100
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

142

Amino Acids

15.32

Weight (kDa)

5.19

Isoelectric Point (pI)

33.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proton_antipo_M PF00361 23 - 136 2.3e-30 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 399
AciI CCGC 2 cut(s) 63, 412
AcsI RAATTY 1 cut(s) 315
AfaI GTAC 1 cut(s) 153
AgsI TTSAA 3 cut(s) 266, 321, 358
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 5 cut(s) 38, 95, 201, 262, 361
AluI AGCT 5 cut(s) 38, 95, 201, 262, 361
ApoI RAATTY 1 cut(s) 315
AspLEI GCGC 1 cut(s) 328
AsuC2I CCSGG 1 cut(s) 247
BciT130I CCWGG 1 cut(s) 312
BcnI CCSGG 1 cut(s) 247
BfaI CTAG 2 cut(s) 44, 368
BfmI CTRYAG 1 cut(s) 342
Bme1390I CCNGG 2 cut(s) 247, 312
BmrFI CCNGG 2 cut(s) 247, 312
BpmI CTGGAG 1 cut(s) 81
BpuMI CCSGG 1 cut(s) 247
BsaJI CCNNGG 2 cut(s) 246, 310
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 246, 310
BseGI GGATG 1 cut(s) 242
BsiSI CCGG 1 cut(s) 246
Bsp143I GATC 1 cut(s) 255
BspACI CCGC 2 cut(s) 63, 412
BspQI GCTCTTC 1 cut(s) 208
BssECI CCNNGG 2 cut(s) 246, 310
BssMI GATC 1 cut(s) 255
BssNAI GTATAC 1 cut(s) 400
Bst1107I GTATAC 1 cut(s) 400
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 156, 221, 343
Bst6I CTCTTC 1 cut(s) 208
BstC8I GCNNGC 1 cut(s) 199
BstF5I GGATG 1 cut(s) 242
BstHHI GCGC 1 cut(s) 328
BstKTI GATC 1 cut(s) 258
BstMBI GATC 1 cut(s) 255
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 2 cut(s) 245, 310
BstSFI CTRYAG 1 cut(s) 342
BstZ17I GTATAC 1 cut(s) 400
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 199
CfoI GCGC 1 cut(s) 328
Csp6I GTAC 1 cut(s) 152
CviAII CATG 1 cut(s) 187
CviJI RGCY 9 cut(s) 5, 38, 95, 167, 201, 232, 262, 361, 371
CviKI_1 RGCY 9 cut(s) 5, 38, 95, 167, 201, 232, 262, 361, 371
CviQI GTAC 1 cut(s) 152
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
Eam1104I CTCTTC 1 cut(s) 208
EarI CTCTTC 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 310
FaeI CATG 1 cut(s) 190
FatI CATG 1 cut(s) 186
FblI GTMKAC 1 cut(s) 399
FokI GGATG 1 cut(s) 229
FspBI CTAG 2 cut(s) 44, 368
GlaI GCGC 1 cut(s) 327
GsuI CTGGAG 1 cut(s) 81
HapII CCGG 1 cut(s) 246
HhaI GCGC 1 cut(s) 328
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 326
HinP1I GCGC 1 cut(s) 326
HindIII AAGCTT 1 cut(s) 359
HinfI GANTC 1 cut(s) 388
HpaII CCGG 1 cut(s) 246
Hpy166II GTNNAC 2 cut(s) 217, 400
Hpy188III TCNNGA 4 cut(s) 98, 132, 266, 392
Hpy8I GTNNAC 2 cut(s) 217, 400
HpyAV CCTTC 2 cut(s) 384, 398
HpyCH4III ACNGT 3 cut(s) 156, 221, 343
HpyCH4IV ACGT 1 cut(s) 396
HpySE526I ACGT 1 cut(s) 396
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 326
Kzo9I GATC 1 cut(s) 255
LguI GCTCTTC 1 cut(s) 208
LmnI GCTCC 2 cut(s) 100, 122
LpnPI CCDG 7 cut(s) 111, 117, 197, 259, 297, 324, 405
MaeI CTAG 2 cut(s) 44, 368
MaeII ACGT 1 cut(s) 396
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MboII GAAGA 1 cut(s) 195
MfeI CAATTG 1 cut(s) 321
MluCI AATT 3 cut(s) 315, 321, 348
MlyI GAGTC 1 cut(s) 382
MnlI CCTC 2 cut(s) 41, 157
MseI TTAA 2 cut(s) 32, 77
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 247, 312
MunI CAATTG 1 cut(s) 321
MvaI CCWGG 1 cut(s) 312
NciI CCSGG 1 cut(s) 247
NdeII GATC 1 cut(s) 255
NlaIII CATG 1 cut(s) 190
PciSI GCTCTTC 1 cut(s) 208
PleI GAGTC 1 cut(s) 382
PpsI GAGTC 1 cut(s) 382
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
RsaI GTAC 1 cut(s) 153
RsaNI GTAC 1 cut(s) 152
SapI GCTCTTC 1 cut(s) 208
SaqAI TTAA 2 cut(s) 32, 77
Sau3AI GATC 1 cut(s) 255
SchI GAGTC 1 cut(s) 382
ScrFI CCNGG 2 cut(s) 247, 312
SetI ASST 7 cut(s) 40, 97, 126, 203, 264, 363, 399
SfcI CTRYAG 1 cut(s) 342
Sse9I AATT 3 cut(s) 315, 321, 348
SsiI CCGC 2 cut(s) 63, 412
SspMI CTAG 2 cut(s) 44, 368
StyD4I CCNGG 2 cut(s) 245, 310
TaaI ACNGT 3 cut(s) 156, 221, 343
TaiI ACGT 1 cut(s) 399
TaqI TCGA 2 cut(s) 258, 421
TasI AATT 3 cut(s) 315, 321, 348
Tru1I TTAA 2 cut(s) 32, 77
Tru9I TTAA 2 cut(s) 32, 77
TscAI CASTG 1 cut(s) 346
TspDTI ATGAA 2 cut(s) 231, 325
TspRI CASTG 1 cut(s) 346
XapI RAATTY 1 cut(s) 315
XmiI GTMKAC 1 cut(s) 399
XspI CTAG 2 cut(s) 44, 368
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.