pycom17g22000

NAD(P)H-quinone oxidoreductase subunit 2

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0004593
Physical Location & Seq
Forward (+)
20422389 .. 20422700
312 bp
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UTR
Exon/CDS
Intron
pycom17g22000.1

Sequence Viewer

Length: 312 bp
ATGTACCTAATTTTTGGCCTAATTTTTCTTCCGATGATCGATTCAACCTTTGATAAAAAAGATATACCCTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCATGACGGTCCAATTGTTCCAATGGAGAGAAGAACCTACGATTAGCTTTTCGGAAAATTTCCAAACAAGCAATTTCTTATTTTACTATGTTCAAATATATAATATAATATATTTAGAGACGAGCTTTTGTGTGATGGAAAAGTTTCTTCTTTGTGACCAAAGGGTCACGGGTTCGAATCATAAAAACAGGTTTTTTGCAAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko03010 map00190 map01100 map03010
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

104

Amino Acids

12.41

Weight (kDa)

5.68

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndh2_N PF19530 3 - 76 7.2e-23 NAD(P)H-quinone oxidoreductase subunit 2 N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 269
AcsI RAATTY 1 cut(s) 163
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 3 cut(s) 45, 90, 200
AjnI CCWGG 1 cut(s) 68
AluBI AGCT 2 cut(s) 153, 231
AluI AGCT 2 cut(s) 153, 231
Alw26I GTCTC 1 cut(s) 218
AoxI GGCC 1 cut(s) 16
ApoI RAATTY 1 cut(s) 163
Asp700I GAANNNNTTC 1 cut(s) 249
AspS9I GGNCC 1 cut(s) 115
AsuII TTCGAA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 115
BccI CCATC 1 cut(s) 235
BciT130I CCWGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 218
Bme1390I CCNGG 1 cut(s) 70
Bme18I GGWCC 1 cut(s) 115
BmgT120I GGNCC 1 cut(s) 115
BmrFI CCNGG 1 cut(s) 70
Bpu14I TTCGAA 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 39
BsaJI CCNNGG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 70
BseCI ATCGAT 1 cut(s) 39
BseDI CCNNGG 1 cut(s) 68
BshFI GGCC 1 cut(s) 18
BshVI ATCGAT 1 cut(s) 39
BsmAI GTCTC 1 cut(s) 218
BsmBI CGTCTC 1 cut(s) 218
BsnI GGCC 1 cut(s) 18
Bsp119I TTCGAA 1 cut(s) 281
Bsp143I GATC 1 cut(s) 36
BspANI GGCC 1 cut(s) 18
BspDI ATCGAT 1 cut(s) 39
BspT104I TTCGAA 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 68
BssMI GATC 1 cut(s) 36
Bst2UI CCWGG 1 cut(s) 70
Bst4CI ACNGT 1 cut(s) 115
Bst6I CTCTTC 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 281
BstKTI GATC 1 cut(s) 39
BstMAI GTCTC 1 cut(s) 218
BstMBI GATC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 70
BstSCI CCNGG 1 cut(s) 68
Bsu15I ATCGAT 1 cut(s) 39
BsuRI GGCC 1 cut(s) 18
BsuTUI ATCGAT 1 cut(s) 39
Cfr13I GGNCC 1 cut(s) 115
ClaI ATCGAT 1 cut(s) 39
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 109
CviJI RGCY 3 cut(s) 18, 153, 231
CviKI_1 RGCY 3 cut(s) 18, 153, 231
CviQI GTAC 1 cut(s) 4
DpnI GATC 1 cut(s) 38
DpnII GATC 1 cut(s) 36
DrdI GACNNNNNNGTC 1 cut(s) 269
DseDI GACNNNNNNGTC 1 cut(s) 269
Eam1104I CTCTTC 1 cut(s) 91
EarI CTCTTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 115
EcoRII CCWGG 1 cut(s) 68
Esp3I CGTCTC 1 cut(s) 218
FaeI CATG 1 cut(s) 112
FaiI YATR 9 cut(s) 65, 76, 110, 195, 205, 207, 212, 217, 288
FatI CATG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 18
Hin1II CATG 1 cut(s) 112
HinfI GANTC 2 cut(s) 41, 283
Hpy188I TCNGA 2 cut(s) 33, 160
HpyCH4III ACNGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 305
Hsp92II CATG 1 cut(s) 112
Kzo9I GATC 1 cut(s) 36
LpnPI CCDG 3 cut(s) 55, 82, 280
MaeIII GTNAC 2 cut(s) 260, 271
MalI GATC 1 cut(s) 38
MboI GATC 1 cut(s) 36
MboII GAAGA 4 cut(s) 20, 78, 149, 245
MfeI CAATTG 1 cut(s) 119
MluCI AATT 5 cut(s) 9, 21, 119, 163, 178
MroXI GAANNNNTTC 1 cut(s) 249
MspR9I CCNGG 1 cut(s) 70
MunI CAATTG 1 cut(s) 119
MvaI CCWGG 1 cut(s) 70
NdeII GATC 1 cut(s) 36
NlaIII CATG 1 cut(s) 112
NmuCI GTSAC 2 cut(s) 260, 271
NspV TTCGAA 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 249
PfeI GAWTC 2 cut(s) 41, 283
Psp6I CCWGG 1 cut(s) 68
PspGI CCWGG 1 cut(s) 68
PspPI GGNCC 1 cut(s) 115
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
Sau3AI GATC 1 cut(s) 36
Sau96I GGNCC 1 cut(s) 115
ScrFI CCNGG 1 cut(s) 70
SetI ASST 6 cut(s) 9, 50, 145, 155, 233, 299
SfuI TTCGAA 1 cut(s) 281
SgeI CNNG 9 cut(s) 81, 82, 105, 121, 186, 240, 286, 288, 307
SinI GGWCC 1 cut(s) 115
Sse9I AATT 5 cut(s) 9, 21, 119, 163, 178
StyD4I CCNGG 1 cut(s) 68
TaaI ACNGT 1 cut(s) 115
TaqI TCGA 2 cut(s) 39, 281
TasI AATT 5 cut(s) 9, 21, 119, 163, 178
TfiI GAWTC 2 cut(s) 41, 283
TseFI GTSAC 2 cut(s) 260, 271
Tsp45I GTSAC 2 cut(s) 260, 271
TspDTI ATGAA 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 115
XapI RAATTY 1 cut(s) 163
XmnI GAANNNNTTC 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.