Rh1CG032100

Proton-conducting membrane transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004593
Physical Location & Seq
Forward (+)
6281076 .. 6281873
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG032100.1

Sequence Viewer

Length: 798 bp
ATGATCTGGCATGTACAGAATGAAAACTTCATTCTCGATTCTACGAGAATTTTTATGAAAGCCTTTCATTTGCTTCTCTTCGATGGAAGTTTTATTTTCCTAGAATGTATCCTAATTTTTGGCCTAATTCTTCTTCTGATGATCGATTCAACCTCTGATCAAAAAGATATACCTTGGTTATATTTCATCTCTTCAACAAGTTTAGTAATGAGCATAACGGCCCTATTGTTCCGATGGAGAGAAGAACCTACGATTAGCTTTTCGGGAAATTTTCAAACGAACAATTTCAACGAAATCTTTCAATTTCTTATTTTACTATGTTCAACTCTATGTATTCCTCTATCCGTAGAGTACATTGAATGTACAGAAATGGCTATAACAGAGTTTTTGTTATTCTTATTAACAGCTACTCTAGGAGGAATGTTTTTATGCGGTGCTAACGATTTAATAACTATCTTTGTAGCTCCAGAATGTTTCAGTTTATGCTCCTACCTATTATCTGGATATACCAAGAAAGATGTACGGTCTAATGAGGCTACTACGAAGTATTTACTCATGGGTGGGGCAAGCTCTTCTATTCTGGTTCACGGTTTCTCTTGGCTATATGGTTCATCCGGGGGGGGGGAGATCGAGCTTCAAGAAATAGTGAATGGTCTTATCAATACACAAATGTATAACTCCCCAGGAATTTCAATTGCGCTTATATTCATCACTGTAGGAATTGGGTTCAAGCTTTCCCTAGCCCCTTCTCATCAATGGACTCCTGACGTATACAAAGGAGTGCGGTTCGTTCGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 map00190 map01100
Pfam Domains
Protein Families
Proton_antipo_M

Protein Analysis

265

Amino Acids

29.79

Weight (kDa)

4.83

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ndh2_N PF19530 18 - 117 1e-49 NAD(P)H-quinone oxidoreductase subunit 2 N-terminal
Proton_antipo_M PF00361 146 - 260 5.4e-29 NADH:quinone oxidoreductase/Mrp antiporter, TM
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 771
AciI CCGC 2 cut(s) 432, 784
AcsI RAATTY 3 cut(s) 48, 268, 687
AfaI GTAC 4 cut(s) 15, 353, 364, 522
AfiI CCNNNNNNNGG 1 cut(s) 621
AjnI CCWGG 1 cut(s) 682
AluBI AGCT 6 cut(s) 258, 407, 464, 570, 634, 733
AluI AGCT 6 cut(s) 258, 407, 464, 570, 634, 733
AoxI GGCC 2 cut(s) 121, 219
ApoI RAATTY 3 cut(s) 48, 268, 687
Asp700I GAANNNNTTC 2 cut(s) 284, 297
AspLEI GCGC 1 cut(s) 700
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 616
BccI CCATC 2 cut(s) 77, 228
BceAI ACGGC 1 cut(s) 234
BciT130I CCWGG 1 cut(s) 684
BciVI GTATCC 1 cut(s) 119
BclI TGATCA 1 cut(s) 157
BcnI CCSGG 1 cut(s) 616
BfaI CTAG 3 cut(s) 101, 413, 740
BfmI CTRYAG 1 cut(s) 714
BfuI GTATCC 1 cut(s) 119
Bme1390I CCNGG 2 cut(s) 616, 684
BmgT120I GGNCC 1 cut(s) 220
BmrFI CCNGG 2 cut(s) 616, 684
BpmI CTGGAG 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 616
Bsa29I ATCGAT 1 cut(s) 144
BsaJI CCNNGG 3 cut(s) 173, 615, 682
Bsc4I CCNNNNNNNGG 1 cut(s) 621
BseBI CCWGG 1 cut(s) 684
BseCI ATCGAT 1 cut(s) 144
BseDI CCNNGG 3 cut(s) 173, 615, 682
BseGI GGATG 1 cut(s) 611
BseLI CCNNNNNNNGG 1 cut(s) 621
BshFI GGCC 2 cut(s) 123, 221
BshVI ATCGAT 1 cut(s) 144
BsiSI CCGG 1 cut(s) 615
BslI CCNNNNNNNGG 1 cut(s) 621
BsnI GGCC 2 cut(s) 123, 221
Bsp1407I TGTACA 2 cut(s) 13, 362
Bsp143I GATC 4 cut(s) 3, 141, 157, 627
BspACI CCGC 2 cut(s) 432, 784
BspANI GGCC 2 cut(s) 123, 221
BspDI ATCGAT 1 cut(s) 144
BspQI GCTCTTC 1 cut(s) 577
BsrGI TGTACA 2 cut(s) 13, 362
BssECI CCNNGG 3 cut(s) 173, 615, 682
BssMI GATC 4 cut(s) 3, 141, 157, 627
BssNAI GTATAC 1 cut(s) 772
BssT1I CCWWGG 1 cut(s) 173
Bst1107I GTATAC 1 cut(s) 772
Bst2UI CCWGG 1 cut(s) 684
Bst4CI ACNGT 3 cut(s) 525, 590, 715
Bst6I CTCTTC 3 cut(s) 83, 196, 577
BstAUI TGTACA 2 cut(s) 13, 362
BstC8I GCNNGC 1 cut(s) 568
BstF5I GGATG 1 cut(s) 611
BstHHI GCGC 1 cut(s) 700
BstKTI GATC 4 cut(s) 6, 144, 160, 630
BstMBI GATC 4 cut(s) 3, 141, 157, 627
BstNI CCWGG 1 cut(s) 684
BstNSI RCATGY 1 cut(s) 14
BstSCI CCNGG 2 cut(s) 614, 682
BstSFI CTRYAG 1 cut(s) 714
BstZ17I GTATAC 1 cut(s) 772
Bsu15I ATCGAT 1 cut(s) 144
BsuI GTATCC 1 cut(s) 119
BsuRI GGCC 2 cut(s) 123, 221
BsuTUI ATCGAT 1 cut(s) 144
BtsCI GGATG 1 cut(s) 611
BtsIMutI CAGTG 1 cut(s) 711
Cac8I GCNNGC 1 cut(s) 568
CfoI GCGC 1 cut(s) 700
Cfr13I GGNCC 1 cut(s) 220
ClaI ATCGAT 1 cut(s) 144
Csp6I GTAC 4 cut(s) 14, 352, 363, 521
CviAII CATG 2 cut(s) 11, 556
CviQI GTAC 4 cut(s) 14, 352, 363, 521
DpnI GATC 4 cut(s) 5, 143, 159, 629
DpnII GATC 4 cut(s) 3, 141, 157, 627
Eam1104I CTCTTC 3 cut(s) 83, 196, 577
EarI CTCTTC 3 cut(s) 83, 196, 577
Eco130I CCWWGG 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 682
EcoT14I CCWWGG 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 173
FaeI CATG 2 cut(s) 14, 559
FatI CATG 2 cut(s) 10, 555
FbaI TGATCA 1 cut(s) 157
FblI GTMKAC 1 cut(s) 771
FokI GGATG 1 cut(s) 598
FspBI CTAG 3 cut(s) 101, 413, 740
GlaI GCGC 1 cut(s) 699
GsuI CTGGAG 1 cut(s) 450
HaeIII GGCC 2 cut(s) 123, 221
HapII CCGG 1 cut(s) 615
HhaI GCGC 1 cut(s) 700
Hin1II CATG 2 cut(s) 14, 559
Hin6I GCGC 1 cut(s) 698
HinP1I GCGC 1 cut(s) 698
HindIII AAGCTT 1 cut(s) 731
HinfI GANTC 3 cut(s) 38, 146, 760
HpaII CCGG 1 cut(s) 615
Hpy166II GTNNAC 2 cut(s) 586, 772
Hpy188I TCNGA 3 cut(s) 138, 157, 233
Hpy188III TCNNGA 6 cut(s) 35, 264, 467, 501, 638, 764
Hpy8I GTNNAC 2 cut(s) 586, 772
HpyAV CCTTC 1 cut(s) 756
HpyCH4III ACNGT 3 cut(s) 525, 590, 715
HpyCH4IV ACGT 1 cut(s) 768
HpySE526I ACGT 1 cut(s) 768
Hsp92II CATG 2 cut(s) 14, 559
HspAI GCGC 1 cut(s) 698
Ksp22I TGATCA 1 cut(s) 157
Kzo9I GATC 4 cut(s) 3, 141, 157, 627
LguI GCTCTTC 1 cut(s) 577
LmnI GCTCC 2 cut(s) 469, 491
LpnPI CCDG 7 cut(s) 480, 486, 566, 628, 669, 696, 777
MaeI CTAG 3 cut(s) 101, 413, 740
MaeII ACGT 1 cut(s) 768
MalI GATC 4 cut(s) 5, 143, 159, 629
MboI GATC 4 cut(s) 3, 141, 157, 627
MboII GAAGA 6 cut(s) 70, 122, 125, 183, 254, 564
MfeI CAATTG 1 cut(s) 693
MluCI AATT 9 cut(s) 48, 114, 126, 268, 283, 302, 687, 693, 720
MlyI GAGTC 1 cut(s) 754
MnlI CCTC 4 cut(s) 163, 348, 410, 526
MroXI GAANNNNTTC 2 cut(s) 284, 297
MseI TTAA 2 cut(s) 401, 446
MspI CCGG 1 cut(s) 615
MspR9I CCNGG 2 cut(s) 616, 684
MunI CAATTG 1 cut(s) 693
MvaI CCWGG 1 cut(s) 684
NciI CCSGG 1 cut(s) 616
NdeII GATC 4 cut(s) 3, 141, 157, 627
NlaIII CATG 2 cut(s) 14, 559
NspI RCATGY 1 cut(s) 14
PciSI GCTCTTC 1 cut(s) 577
PdmI GAANNNNTTC 2 cut(s) 284, 297
PfeI GAWTC 2 cut(s) 38, 146
PleI GAGTC 1 cut(s) 754
PpsI GAGTC 1 cut(s) 754
Psp6I CCWGG 1 cut(s) 682
PspGI CCWGG 1 cut(s) 682
PspPI GGNCC 1 cut(s) 220
RsaI GTAC 4 cut(s) 15, 353, 364, 522
RsaNI GTAC 4 cut(s) 14, 352, 363, 521
SapI GCTCTTC 1 cut(s) 577
SaqAI TTAA 2 cut(s) 401, 446
Sau3AI GATC 4 cut(s) 3, 141, 157, 627
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 1 cut(s) 754
ScrFI CCNGG 2 cut(s) 616, 684
SfcI CTRYAG 1 cut(s) 714
Sse9I AATT 9 cut(s) 48, 114, 126, 268, 283, 302, 687, 693, 720
SsiI CCGC 2 cut(s) 432, 784
SspMI CTAG 3 cut(s) 101, 413, 740
StyD4I CCNGG 2 cut(s) 614, 682
StyI CCWWGG 1 cut(s) 173
TaaI ACNGT 3 cut(s) 525, 590, 715
TaiI ACGT 1 cut(s) 771
TaqI TCGA 5 cut(s) 36, 81, 144, 630, 793
TasI AATT 9 cut(s) 48, 114, 126, 268, 283, 302, 687, 693, 720
TatI WGTACW 3 cut(s) 13, 351, 362
TfiI GAWTC 2 cut(s) 38, 146
Tru1I TTAA 2 cut(s) 401, 446
Tru9I TTAA 2 cut(s) 401, 446
TscAI CASTG 1 cut(s) 718
TspDTI ATGAA 7 cut(s) 19, 36, 56, 71, 175, 600, 697
TspGWI ACGGA 1 cut(s) 334
TspRI CASTG 1 cut(s) 718
XapI RAATTY 3 cut(s) 48, 268, 687
XceI RCATGY 1 cut(s) 14
XmiI GTMKAC 1 cut(s) 771
XmnI GAANNNNTTC 2 cut(s) 284, 297
XspI CTAG 3 cut(s) 101, 413, 740
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.