Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004593

Physical Location & Seq

Genomic Coordinates Forward (+)

92761 .. 93169

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ15619

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGGGAATGCATGCTACGAAAGATAGAGTCGAGTCTGATACATCAACCGTCTACTCAATATCCTTGTATGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGGTGAATTGAAGTTGACCTTAGGTGTAATAGGGACTCCCAGTTACTGTGCGCGATCGTATACTGGGGTGCTCCCCGCCGGTTGTTGGAACGACGCGAGCCGGGCCGGGCCTCGATTAAGAAAGATGAAGGGCCAAAAAGTACAGTATAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0016020 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04714 ko04723 ko05012 map00190 map01100 map04714 map04723 map05012

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

85

Amino Acids

9.46

Weight (kDa)

9.26

Isoelectric Point (pI)

33.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004593)

Species	Orthologous Gene IDs
malus_domestica	MD01G1004500.v1.1 MD01G1004600.v1.1 MD06G1091100.v1.1
pyrus_communis	pycom12397g00070 pycom12397g00130 pycom17g22000
rosa_chinensis	RchiOBHm_Chr2g0118391 RchiOBHm_Chr5g0051091 RchiOBHm_CPg0501751 RchiOBHm_CPg0502661 RchiOBHm_MTg0498521
rosa_laevigata	RLG00000000002 RLG00000000005 RLG00000000029 RLG00000000038 RLG00000000061 RLG00000000096 RLG00000000103 RLG00000000183 RLG00000000212 RLG00000000241 RLG00000000302 RLG00000000304 RLG00000037094 RLG00000037113 RLG00000037117
rosa_multiflora	Rmu_sc0006632.1_g000001
rosa_rugosa	RorugMtG0003100.1 RorugMtG0003300.1
rosa_samantha	Rh1CG032100 Rh5BG348000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	51, 164
AccII	CGCG	2 cut(s)	157, 200
AciI	CCGC	1 cut(s)	180
AfaI	GTAC	1 cut(s)	246
AfiI	CCNNNNNNNGG	2 cut(s)	104, 189
AgsI	TTSAA	1 cut(s)	115
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
Alw21I	GWGCWC	1 cut(s)	177
AlwNI	CAGNNNCTG	1 cut(s)	150
AoxI	GGCC	3 cut(s)	207, 212, 235
AspLEI	GCGC	1 cut(s)	157
AspS9I	GGNCC	3 cut(s)	207, 212, 235
AsuC2I	CCSGG	2 cut(s)	206, 211
AsuHPI	GGTGA	1 cut(s)	119
AxyI	CCTNAGG	1 cut(s)	124
BauI	CACGAG	1 cut(s)	87
Bbv12I	GWGCWC	1 cut(s)	177
BcnI	CCSGG	2 cut(s)	206, 211
Bme1390I	CCNGG	2 cut(s)	206, 211
BmgT120I	GGNCC	3 cut(s)	207, 212, 235
BmrFI	CCNGG	2 cut(s)	206, 211
BmrI	ACTGGG	2 cut(s)	138, 177
BmuI	ACTGGG	2 cut(s)	138, 177
BpuMI	CCSGG	2 cut(s)	206, 211
BsaJI	CCNNGG	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	2 cut(s)	104, 189
Bse118I	RCCGGY	1 cut(s)	182
Bse1I	ACTGG	2 cut(s)	144, 172
Bse21I	CCTNAGG	1 cut(s)	124
BseDI	CCNNGG	1 cut(s)	98
BseLI	CCNNNNNNNGG	2 cut(s)	104, 189
BseNI	ACTGG	2 cut(s)	144, 172
Bsh1236I	CGCG	2 cut(s)	157, 200
Bsh1285I	CGRYCG	1 cut(s)	161
BshFI	GGCC	3 cut(s)	209, 214, 237
BsiEI	CGRYCG	1 cut(s)	161
BsiHKAI	GWGCWC	1 cut(s)	177
BsiSI	CCGG	3 cut(s)	183, 205, 210
BslFI	GGGAC	1 cut(s)	151
BslI	CCNNNNNNNGG	2 cut(s)	104, 189
BsmFI	GGGAC	1 cut(s)	151
BsmI	GAATGC	1 cut(s)	12
BsnI	GGCC	3 cut(s)	209, 214, 237
Bsp1286I	GDGCHC	1 cut(s)	177
Bsp143I	GATC	1 cut(s)	158
BspACI	CCGC	1 cut(s)	180
BspANI	GGCC	3 cut(s)	209, 214, 237
BspFNI	CGCG	2 cut(s)	157, 200
BsrFI	RCCGGY	1 cut(s)	182
BsrI	ACTGG	2 cut(s)	144, 172
BssAI	RCCGGY	1 cut(s)	182
BssECI	CCNNGG	1 cut(s)	98
BssMI	GATC	1 cut(s)	158
BssNAI	GTATAC	1 cut(s)	165
BssSI	CACGAG	1 cut(s)	87
BssT1I	CCWWGG	1 cut(s)	98
Bst1107I	GTATAC	1 cut(s)	165
Bst2BI	CACGAG	1 cut(s)	87
Bst4CI	ACNGT	3 cut(s)	49, 152, 249
BstC8I	GCNNGC	2 cut(s)	12, 202
BstDEI	CTNAG	1 cut(s)	124
BstFNI	CGCG	2 cut(s)	157, 200
BstHHI	GCGC	1 cut(s)	157
BstKTI	GATC	1 cut(s)	161
BstMBI	GATC	1 cut(s)	158
BstMCI	CGRYCG	1 cut(s)	161
BstMWI	GCNNNNNNNGC	1 cut(s)	206
BstNSI	RCATGY	1 cut(s)	14
BstSCI	CCNGG	2 cut(s)	204, 209
BstUI	CGCG	2 cut(s)	157, 200
BstZ17I	GTATAC	1 cut(s)	165
Bsu36I	CCTNAGG	1 cut(s)	124
BsuRI	GGCC	3 cut(s)	209, 214, 237
Cac8I	GCNNGC	2 cut(s)	12, 202
CaiI	CAGNNNCTG	1 cut(s)	150
CfoI	GCGC	1 cut(s)	157
Cfr10I	RCCGGY	1 cut(s)	182
Cfr13I	GGNCC	3 cut(s)	207, 212, 235
CseI	GACGC	1 cut(s)	206
Csp6I	GTAC	1 cut(s)	245
CviAII	CATG	1 cut(s)	11
CviJI	RGCY	4 cut(s)	204, 209, 214, 237
CviKI_1	RGCY	4 cut(s)	204, 209, 214, 237
CviQI	GTAC	1 cut(s)	245
DdeI	CTNAG	1 cut(s)	124
DpnI	GATC	1 cut(s)	160
DpnII	GATC	1 cut(s)	158
Eco130I	CCWWGG	1 cut(s)	98
Eco81I	CCTNAGG	1 cut(s)	124
EcoT14I	CCWWGG	1 cut(s)	98
EcoT22I	ATGCAT	1 cut(s)	12
ErhI	CCWWGG	1 cut(s)	98
FaeI	CATG	1 cut(s)	14
FaiI	YATR	4 cut(s)	12, 69, 165, 252
FalI	AAGNNNNNCTT	2 cut(s)	107, 139
FaqI	GGGAC	1 cut(s)	151
FatI	CATG	1 cut(s)	10
FauI	CCCGC	1 cut(s)	187
FblI	GTMKAC	2 cut(s)	51, 164
GlaI	GCGC	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	209, 214, 237
HapII	CCGG	3 cut(s)	183, 205, 210
HgaI	GACGC	1 cut(s)	206
HhaI	GCGC	1 cut(s)	157
Hin1II	CATG	1 cut(s)	14
Hin6I	GCGC	1 cut(s)	155
HinP1I	GCGC	1 cut(s)	155
HincII	GTYRAC	1 cut(s)	120
HindII	GTYRAC	1 cut(s)	120
HinfI	GANTC	4 cut(s)	27, 32, 71, 139
HpaII	CCGG	3 cut(s)	183, 205, 210
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	4 cut(s)	52, 75, 120, 165
Hpy188I	TCNGA	1 cut(s)	37
Hpy8I	GTNNAC	4 cut(s)	52, 75, 120, 165
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	3 cut(s)	49, 152, 249
HpyCH4V	TGCA	1 cut(s)	10
HpyF10VI	GCNNNNNNNGC	1 cut(s)	206
HpyF3I	CTNAG	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	14
HspAI	GCGC	1 cut(s)	155
Kzo9I	GATC	1 cut(s)	158
LmnI	GCTCC	1 cut(s)	180
LpnPI	CCDG	5 cut(s)	153, 157, 196, 218, 223
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	1 cut(s)	160
MboI	GATC	1 cut(s)	158
MhlI	GDGCHC	1 cut(s)	177
MluCI	AATT	1 cut(s)	110
MlyI	GAGTC	4 cut(s)	36, 41, 80, 133
MmeI	TCCRAC	1 cut(s)	170
MnlI	CCTC	1 cut(s)	225
Mph1103I	ATGCAT	1 cut(s)	12
MseI	TTAA	1 cut(s)	221
MspI	CCGG	3 cut(s)	183, 205, 210
MspR9I	CCNGG	2 cut(s)	206, 211
Mva1269I	GAATGC	1 cut(s)	12
MvnI	CGCG	2 cut(s)	157, 200
MwoI	GCNNNNNNNGC	1 cut(s)	206
NciI	CCSGG	2 cut(s)	206, 211
NdeII	GATC	1 cut(s)	158
NlaIII	CATG	1 cut(s)	14
NsiI	ATGCAT	1 cut(s)	12
NspI	RCATGY	1 cut(s)	14
PaeI	GCATGC	1 cut(s)	14
PctI	GAATGC	1 cut(s)	12
Ple19I	CGATCG	1 cut(s)	161
PleI	GAGTC	4 cut(s)	35, 40, 79, 133
PpsI	GAGTC	4 cut(s)	35, 40, 79, 133
PspPI	GGNCC	3 cut(s)	207, 212, 235
PstNI	CAGNNNCTG	1 cut(s)	150
PvuI	CGATCG	1 cut(s)	161
RsaI	GTAC	1 cut(s)	246
RsaNI	GTAC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	158
Sau96I	GGNCC	3 cut(s)	207, 212, 235
SchI	GAGTC	4 cut(s)	36, 41, 80, 133
ScrFI	CCNGG	2 cut(s)	206, 211
SduI	GDGCHC	1 cut(s)	177
SetI	ASST	3 cut(s)	100, 125, 130
SphI	GCATGC	1 cut(s)	14
Sse9I	AATT	1 cut(s)	110
SsiI	CCGC	1 cut(s)	180
StyD4I	CCNGG	2 cut(s)	204, 209
StyI	CCWWGG	1 cut(s)	98
TaaI	ACNGT	3 cut(s)	49, 152, 249
TaqI	TCGA	2 cut(s)	30, 217
TasI	AATT	1 cut(s)	110
TatI	WGTACW	1 cut(s)	244
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TspDTI	ATGAA	2 cut(s)	108, 245
XceI	RCATGY	1 cut(s)	14
XmiI	GTMKAC	2 cut(s)	51, 164
Zsp2I	ATGCAT	1 cut(s)	12

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.