NDH shuttles electrons from NAD(P)H plastoquinone, via FMN and iron-sulfur (Fe-S) centers, to quinones in the photosynthetic chain and possibly in a chloroplast respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| malus_domestica | MD01G1004500.v1.1 MD01G1004600.v1.1 MD06G1091100.v1.1 |
| pyrus_communis | pycom12397g00070 pycom12397g00130 pycom17g22000 |
| rosa_chinensis | RchiOBHm_Chr2g0118391 RchiOBHm_Chr5g0051091 RchiOBHm_CPg0501751 RchiOBHm_CPg0502661 RchiOBHm_MTg0498521 |
| rosa_laevigata | RLG00000000002 RLG00000000005 RLG00000000029 RLG00000000038 RLG00000000061 RLG00000000096 RLG00000000103 RLG00000000183 RLG00000000212 RLG00000000241 RLG00000000302 RLG00000000304 RLG00000037094 RLG00000037113 RLG00000037117 |
| rosa_multiflora | Rmu_sc0006632.1_g000001 |
| rosa_rugosa | RorugMtG0003100.1 RorugMtG0003300.1 |
| rosa_samantha | Rh1CG032100 Rh5BG348000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 2 cut(s) | 768, 835 |
| AciI | CCGC | 1 cut(s) | 432 |
| AclWI | GGATC | 1 cut(s) | 852 |
| AcsI | RAATTY | 3 cut(s) | 48, 268, 684 |
| AcuI | CTGAAG | 1 cut(s) | 787 |
| AfaI | GTAC | 4 cut(s) | 15, 353, 364, 522 |
| AjnI | CCWGG | 1 cut(s) | 679 |
| AluBI | AGCT | 6 cut(s) | 258, 407, 464, 570, 631, 730 |
| AluI | AGCT | 6 cut(s) | 258, 407, 464, 570, 631, 730 |
| Alw26I | GTCTC | 1 cut(s) | 801 |
| AlwI | GGATC | 1 cut(s) | 852 |
| AoxI | GGCC | 1 cut(s) | 121 |
| ApoI | RAATTY | 3 cut(s) | 48, 268, 684 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 284, 297 |
| AspLEI | GCGC | 1 cut(s) | 697 |
| AsuC2I | CCSGG | 1 cut(s) | 616 |
| AsuHPI | GGTGA | 1 cut(s) | 839 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 765, 797 |
| BccI | CCATC | 2 cut(s) | 77, 888 |
| BciT130I | CCWGG | 1 cut(s) | 681 |
| BciVI | GTATCC | 1 cut(s) | 119 |
| BclI | TGATCA | 2 cut(s) | 157, 858 |
| BcnI | CCSGG | 1 cut(s) | 616 |
| BcoDI | GTCTC | 1 cut(s) | 801 |
| BfaI | CTAG | 3 cut(s) | 125, 413, 737 |
| BfmI | CTRYAG | 1 cut(s) | 711 |
| BfuI | GTATCC | 1 cut(s) | 119 |
| Bme1390I | CCNGG | 2 cut(s) | 616, 681 |
| BmrFI | CCNGG | 2 cut(s) | 616, 681 |
| BmsI | GCATC | 1 cut(s) | 837 |
| BpmI | CTGGAG | 1 cut(s) | 450 |
| BpuMI | CCSGG | 1 cut(s) | 616 |
| Bsa29I | ATCGAT | 1 cut(s) | 144 |
| BsaBI | GATNNNNATC | 1 cut(s) | 860 |
| BsaJI | CCNNGG | 3 cut(s) | 173, 615, 679 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 817, 847 |
| Bse8I | GATNNNNATC | 1 cut(s) | 860 |
| BseBI | CCWGG | 1 cut(s) | 681 |
| BseCI | ATCGAT | 1 cut(s) | 144 |
| BseDI | CCNNGG | 3 cut(s) | 173, 615, 679 |
| BseGI | GGATG | 3 cut(s) | 611, 797, 828 |
| BseJI | GATNNNNATC | 1 cut(s) | 860 |
| BseMII | CTCAG | 1 cut(s) | 927 |
| BshFI | GGCC | 1 cut(s) | 123 |
| BshVI | ATCGAT | 1 cut(s) | 144 |
| BsiSI | CCGG | 1 cut(s) | 615 |
| BsmAI | GTCTC | 1 cut(s) | 801 |
| BsmI | GAATGC | 1 cut(s) | 783 |
| BsnI | GGCC | 1 cut(s) | 123 |
| Bsp1407I | TGTACA | 2 cut(s) | 13, 362 |
| Bsp143I | GATC | 6 cut(s) | 3, 141, 157, 624, 844, 858 |
| BspACI | CCGC | 1 cut(s) | 432 |
| BspANI | GGCC | 1 cut(s) | 123 |
| BspCNI | CTCAG | 1 cut(s) | 928 |
| BspDI | ATCGAT | 1 cut(s) | 144 |
| BspPI | GGATC | 1 cut(s) | 852 |
| BspQI | GCTCTTC | 1 cut(s) | 577 |
| BsrGI | TGTACA | 2 cut(s) | 13, 362 |
| BssECI | CCNNGG | 3 cut(s) | 173, 615, 679 |
| BssMI | GATC | 6 cut(s) | 3, 141, 157, 624, 844, 858 |
| BssNAI | GTATAC | 1 cut(s) | 769 |
| BssT1I | CCWWGG | 1 cut(s) | 173 |
| Bst1107I | GTATAC | 1 cut(s) | 769 |
| Bst2UI | CCWGG | 1 cut(s) | 681 |
| Bst4CI | ACNGT | 3 cut(s) | 525, 590, 712 |
| Bst6I | CTCTTC | 3 cut(s) | 83, 196, 577 |
| BstAUI | TGTACA | 2 cut(s) | 13, 362 |
| BstC8I | GCNNGC | 1 cut(s) | 568 |
| BstDEI | CTNAG | 2 cut(s) | 852, 936 |
| BstF5I | GGATG | 3 cut(s) | 611, 797, 828 |
| BstHHI | GCGC | 1 cut(s) | 697 |
| BstKTI | GATC | 6 cut(s) | 6, 144, 160, 627, 847, 861 |
| BstMAI | GTCTC | 1 cut(s) | 801 |
| BstMBI | GATC | 6 cut(s) | 3, 141, 157, 624, 844, 858 |
| BstNI | CCWGG | 1 cut(s) | 681 |
| BstNSI | RCATGY | 1 cut(s) | 14 |
| BstSCI | CCNGG | 2 cut(s) | 614, 679 |
| BstSFI | CTRYAG | 1 cut(s) | 711 |
| BstZ17I | GTATAC | 1 cut(s) | 769 |
| Bsu15I | ATCGAT | 1 cut(s) | 144 |
| BsuI | GTATCC | 1 cut(s) | 119 |
| BsuRI | GGCC | 1 cut(s) | 123 |
| BsuTUI | ATCGAT | 1 cut(s) | 144 |
| BtsCI | GGATG | 3 cut(s) | 611, 797, 828 |
| BtsIMutI | CAGTG | 2 cut(s) | 708, 975 |
| Cac8I | GCNNGC | 1 cut(s) | 568 |
| CfoI | GCGC | 1 cut(s) | 697 |
| ClaI | ATCGAT | 1 cut(s) | 144 |
| Csp6I | GTAC | 4 cut(s) | 14, 352, 363, 521 |
| CviAII | CATG | 3 cut(s) | 11, 556, 867 |
| CviQI | GTAC | 4 cut(s) | 14, 352, 363, 521 |
| DdeI | CTNAG | 2 cut(s) | 852, 936 |
| DpnI | GATC | 6 cut(s) | 5, 143, 159, 626, 846, 860 |
| DpnII | GATC | 6 cut(s) | 3, 141, 157, 624, 844, 858 |
| Eam1104I | CTCTTC | 3 cut(s) | 83, 196, 577 |
| EarI | CTCTTC | 3 cut(s) | 83, 196, 577 |
| Eco130I | CCWWGG | 1 cut(s) | 173 |
| Eco57I | CTGAAG | 1 cut(s) | 787 |
| EcoRII | CCWGG | 1 cut(s) | 679 |
| EcoT14I | CCWWGG | 1 cut(s) | 173 |
| ErhI | CCWWGG | 1 cut(s) | 173 |
| FaeI | CATG | 3 cut(s) | 14, 559, 870 |
| FatI | CATG | 3 cut(s) | 10, 555, 866 |
| FbaI | TGATCA | 2 cut(s) | 157, 858 |
| FblI | GTMKAC | 2 cut(s) | 768, 835 |
| FokI | GGATG | 3 cut(s) | 598, 784, 815 |
| FspBI | CTAG | 3 cut(s) | 125, 413, 737 |
| GlaI | GCGC | 1 cut(s) | 696 |
| GsuI | CTGGAG | 1 cut(s) | 450 |
| HaeIII | GGCC | 1 cut(s) | 123 |
| HapII | CCGG | 1 cut(s) | 615 |
| HhaI | GCGC | 1 cut(s) | 697 |
| Hin1II | CATG | 3 cut(s) | 14, 559, 870 |
| Hin6I | GCGC | 1 cut(s) | 695 |
| HinP1I | GCGC | 1 cut(s) | 695 |
| HincII | GTYRAC | 1 cut(s) | 836 |
| HindII | GTYRAC | 1 cut(s) | 836 |
| HindIII | AAGCTT | 1 cut(s) | 728 |
| HinfI | GANTC | 5 cut(s) | 38, 146, 757, 883, 987 |
| HpaII | CCGG | 1 cut(s) | 615 |
| HphI | GGTGA | 1 cut(s) | 839 |
| Hpy166II | GTNNAC | 3 cut(s) | 586, 769, 836 |
| Hpy188I | TCNGA | 5 cut(s) | 138, 157, 806, 893, 918 |
| Hpy188III | TCNNGA | 6 cut(s) | 35, 264, 467, 501, 635, 761 |
| Hpy8I | GTNNAC | 3 cut(s) | 586, 769, 836 |
| Hpy99I | CGWCG | 1 cut(s) | 837 |
| HpyAV | CCTTC | 4 cut(s) | 753, 767, 811, 977 |
| HpyCH4III | ACNGT | 3 cut(s) | 525, 590, 712 |
| HpyCH4IV | ACGT | 1 cut(s) | 765 |
| HpyF3I | CTNAG | 2 cut(s) | 852, 936 |
| HpySE526I | ACGT | 1 cut(s) | 765 |
| Hsp92II | CATG | 3 cut(s) | 14, 559, 870 |
| HspAI | GCGC | 1 cut(s) | 695 |
| Ksp22I | TGATCA | 2 cut(s) | 157, 858 |
| Kzo9I | GATC | 6 cut(s) | 3, 141, 157, 624, 844, 858 |
| LguI | GCTCTTC | 1 cut(s) | 577 |
| LmnI | GCTCC | 4 cut(s) | 469, 491, 825, 929 |
| LpnPI | CCDG | 8 cut(s) | 114, 480, 486, 566, 628, 666, 693, 774 |
| LweI | GCATC | 1 cut(s) | 837 |
| MaeI | CTAG | 3 cut(s) | 125, 413, 737 |
| MaeII | ACGT | 1 cut(s) | 765 |
| MalI | GATC | 6 cut(s) | 5, 143, 159, 626, 846, 860 |
| MboI | GATC | 6 cut(s) | 3, 141, 157, 624, 844, 858 |
| MboII | GAAGA | 6 cut(s) | 70, 122, 125, 183, 254, 564 |
| MfeI | CAATTG | 1 cut(s) | 690 |
| MluCI | AATT | 8 cut(s) | 48, 114, 268, 283, 302, 684, 690, 717 |
| MlyI | GAGTC | 1 cut(s) | 751 |
| MnlI | CCTC | 6 cut(s) | 163, 348, 410, 526, 931, 1001 |
| MroXI | GAANNNNTTC | 2 cut(s) | 284, 297 |
| MseI | TTAA | 3 cut(s) | 401, 446, 1001 |
| MspI | CCGG | 1 cut(s) | 615 |
| MspR9I | CCNGG | 2 cut(s) | 616, 681 |
| MunI | CAATTG | 1 cut(s) | 690 |
| Mva1269I | GAATGC | 1 cut(s) | 783 |
| MvaI | CCWGG | 1 cut(s) | 681 |
| NciI | CCSGG | 1 cut(s) | 616 |
| NdeII | GATC | 6 cut(s) | 3, 141, 157, 624, 844, 858 |
| NlaIII | CATG | 3 cut(s) | 14, 559, 870 |
| NspI | RCATGY | 1 cut(s) | 14 |
| PciSI | GCTCTTC | 1 cut(s) | 577 |
| PctI | GAATGC | 1 cut(s) | 783 |
| PdmI | GAANNNNTTC | 2 cut(s) | 284, 297 |
| PfeI | GAWTC | 4 cut(s) | 38, 146, 883, 987 |
| PleI | GAGTC | 1 cut(s) | 751 |
| PpsI | GAGTC | 1 cut(s) | 751 |
| Psp6I | CCWGG | 1 cut(s) | 679 |
| PspGI | CCWGG | 1 cut(s) | 679 |
| RsaI | GTAC | 4 cut(s) | 15, 353, 364, 522 |
| RsaNI | GTAC | 4 cut(s) | 14, 352, 363, 521 |
| SalI | GTCGAC | 1 cut(s) | 834 |
| SapI | GCTCTTC | 1 cut(s) | 577 |
| SaqAI | TTAA | 3 cut(s) | 401, 446, 1001 |
| Sau3AI | GATC | 6 cut(s) | 3, 141, 157, 624, 844, 858 |
| SchI | GAGTC | 1 cut(s) | 751 |
| ScrFI | CCNGG | 2 cut(s) | 616, 681 |
| SfaNI | GCATC | 1 cut(s) | 837 |
| SfcI | CTRYAG | 1 cut(s) | 711 |
| Sse9I | AATT | 8 cut(s) | 48, 114, 268, 283, 302, 684, 690, 717 |
| SsiI | CCGC | 1 cut(s) | 432 |
| SspMI | CTAG | 3 cut(s) | 125, 413, 737 |
| StyD4I | CCNGG | 2 cut(s) | 614, 679 |
| StyI | CCWWGG | 1 cut(s) | 173 |
| TaaI | ACNGT | 3 cut(s) | 525, 590, 712 |
| TaiI | ACGT | 1 cut(s) | 768 |
| TaqI | TCGA | 7 cut(s) | 36, 81, 144, 627, 835, 942, 993 |
| TasI | AATT | 8 cut(s) | 48, 114, 268, 283, 302, 684, 690, 717 |
| TatI | WGTACW | 3 cut(s) | 13, 351, 362 |
| TfiI | GAWTC | 4 cut(s) | 38, 146, 883, 987 |
| Tru1I | TTAA | 3 cut(s) | 401, 446, 1001 |
| Tru9I | TTAA | 3 cut(s) | 401, 446, 1001 |
| TscAI | CASTG | 2 cut(s) | 715, 982 |
| TspDTI | ATGAA | 8 cut(s) | 19, 36, 56, 71, 175, 600, 694, 996 |
| TspGWI | ACGGA | 3 cut(s) | 334, 821, 945 |
| TspRI | CASTG | 2 cut(s) | 715, 982 |
| XapI | RAATTY | 3 cut(s) | 48, 268, 684 |
| XceI | RCATGY | 1 cut(s) | 14 |
| XmiI | GTMKAC | 2 cut(s) | 768, 835 |
| XmnI | GAANNNNTTC | 2 cut(s) | 284, 297 |
| XspI | CTAG | 3 cut(s) | 125, 413, 737 |