Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006632.1

Orthogroup ID

OG0004593

Physical Location & Seq

Genomic Coordinates Reverse (-)

1962 .. 2747

Gene Structure 786 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006632.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atgggtggggcaagctcttctattctggttcactgtttctcttggctatatggttcatccgggggggagatcgagcttcaagaaatagtgaatggtcttatcaatacacaaatgtataactccccaggaatttcaattgcgcttatattcatcactgtaggaattgggttcaagctttccctagccccttctcatcaatggactcctgacgtatacgaaggagtgcggtacccttttgttgaaggttggtcgatcttttcctgggagtatggcatgggttacttcagggccgtggcgcctgcctcctccgtccctcgggaccaacaaggggtagtacaagaatatccacctgttgtccatcgactacgcctttcggcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Proton_antipo_M

Protein Analysis

126

Amino Acids

13.87

Weight (kDa)

5.45

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004593)

Species	Orthologous Gene IDs
malus_domestica	MD01G1004500.v1.1 MD01G1004600.v1.1 MD06G1091100.v1.1
pyrus_communis	pycom12397g00070 pycom12397g00130 pycom17g22000
rosa_chinensis	RchiOBHm_Chr2g0118391 RchiOBHm_Chr5g0051091 RchiOBHm_CPg0501751 RchiOBHm_CPg0502661 RchiOBHm_MTg0498521
rosa_laevigata	RLG00000000002 RLG00000000005 RLG00000000029 RLG00000000038 RLG00000000061 RLG00000000096 RLG00000000103 RLG00000000183 RLG00000000212 RLG00000000241 RLG00000000302 RLG00000000304 RLG00000037094 RLG00000037113 RLG00000037117
rosa_multiflora	Rmu_sc0006632.1_g000001
rosa_rugosa	RorugMtG0003100.1 RorugMtG0003300.1
rosa_samantha	Rh1CG032100 Rh5BG348000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	228
AccB1I	GGYRCC	2 cut(s)	228, 295
AccI	GTMKAC	1 cut(s)	213
AciI	CCGC	1 cut(s)	226
AcsI	RAATTY	1 cut(s)	129
AcuI	CTGAAG	1 cut(s)	268
AcyI	GRCGYC	1 cut(s)	296
AfaI	GTAC	2 cut(s)	230, 336
AfiI	CCNNNNNNNGG	2 cut(s)	315, 328
AgsI	TTSAA	4 cut(s)	80, 135, 172, 242
AjnI	CCWGG	2 cut(s)	124, 260
AluBI	AGCT	3 cut(s)	15, 76, 175
AluI	AGCT	3 cut(s)	15, 76, 175
Ama87I	CYCGRG	1 cut(s)	315
AoxI	GGCC	2 cut(s)	288, 375
ApoI	RAATTY	1 cut(s)	129
Asp718I	GGTACC	1 cut(s)	228
AspLEI	GCGC	2 cut(s)	142, 298
AspS9I	GGNCC	2 cut(s)	288, 319
AsuC2I	CCSGG	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	319
BanI	GGYRCC	2 cut(s)	228, 295
BccI	CCATC	1 cut(s)	366
BceAI	ACGGC	1 cut(s)	275
BciT130I	CCWGG	2 cut(s)	126, 262
BcnI	CCSGG	1 cut(s)	61
BfaI	CTAG	1 cut(s)	182
BfmI	CTRYAG	1 cut(s)	156
BfoI	RGCGCY	1 cut(s)	299
Bme1390I	CCNGG	3 cut(s)	61, 126, 262
Bme18I	GGWCC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	315
BmgT120I	GGNCC	2 cut(s)	288, 319
BmiI	GGNNCC	3 cut(s)	230, 297, 320
BmrFI	CCNGG	3 cut(s)	61, 126, 262
BpuMI	CCSGG	1 cut(s)	61
BsaHI	GRCGYC	1 cut(s)	296
BsaJI	CCNNGG	5 cut(s)	60, 124, 261, 291, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	315, 328
BseBI	CCWGG	2 cut(s)	126, 262
BseDI	CCNNGG	5 cut(s)	60, 124, 261, 291, 314
BseGI	GGATG	1 cut(s)	56
BseLI	CCNNNNNNNGG	2 cut(s)	315, 328
BseRI	GAGGAG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	290, 377
BshNI	GGYRCC	2 cut(s)	228, 295
BsiHKCI	CYCGRG	1 cut(s)	315
BsiSI	CCGG	1 cut(s)	60
BslFI	GGGAC	2 cut(s)	296, 332
BslI	CCNNNNNNNGG	2 cut(s)	315, 328
BsmFI	GGGAC	2 cut(s)	296, 332
BsnI	GGCC	2 cut(s)	290, 377
BsoBI	CYCGRG	1 cut(s)	315
Bsp143I	GATC	2 cut(s)	69, 252
BspACI	CCGC	1 cut(s)	226
BspANI	GGCC	2 cut(s)	290, 377
BspLI	GGNNCC	3 cut(s)	230, 297, 320
BspQI	GCTCTTC	1 cut(s)	22
BspT107I	GGYRCC	2 cut(s)	228, 295
BssECI	CCNNGG	5 cut(s)	60, 124, 261, 291, 314
BssMI	GATC	2 cut(s)	69, 252
BssNAI	GTATAC	1 cut(s)	214
BssNI	GRCGYC	1 cut(s)	296
Bst1107I	GTATAC	1 cut(s)	214
Bst2UI	CCWGG	2 cut(s)	126, 262
Bst4CI	ACNGT	2 cut(s)	35, 157
Bst6I	CTCTTC	1 cut(s)	22
BstACI	GRCGYC	1 cut(s)	296
BstC8I	GCNNGC	2 cut(s)	13, 300
BstDSI	CCRYGG	1 cut(s)	291
BstF5I	GGATG	1 cut(s)	56
BstH2I	RGCGCY	1 cut(s)	299
BstHHI	GCGC	2 cut(s)	142, 298
BstKTI	GATC	2 cut(s)	72, 255
BstMBI	GATC	2 cut(s)	69, 252
BstNI	CCWGG	2 cut(s)	126, 262
BstSCI	CCNGG	3 cut(s)	59, 124, 260
BstSFI	CTRYAG	1 cut(s)	156
BstZ17I	GTATAC	1 cut(s)	214
BsuRI	GGCC	2 cut(s)	290, 377
BtgI	CCRYGG	1 cut(s)	291
BtsCI	GGATG	1 cut(s)	56
BtsIMutI	CAGTG	2 cut(s)	31, 153
Cac8I	GCNNGC	2 cut(s)	13, 300
CfoI	GCGC	2 cut(s)	142, 298
Cfr13I	GGNCC	2 cut(s)	288, 319
Csp6I	GTAC	2 cut(s)	229, 335
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	7 cut(s)	15, 46, 76, 175, 185, 290, 377
CviKI_1	RGCY	7 cut(s)	15, 46, 76, 175, 185, 290, 377
CviQI	GTAC	2 cut(s)	229, 335
DinI	GGCGCC	1 cut(s)	297
DpnI	GATC	2 cut(s)	71, 254
DpnII	GATC	2 cut(s)	69, 252
Eam1104I	CTCTTC	1 cut(s)	22
EarI	CTCTTC	1 cut(s)	22
Eco47I	GGWCC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	268
Eco88I	CYCGRG	1 cut(s)	315
EcoRII	CCWGG	2 cut(s)	124, 260
EgeI	GGCGCC	1 cut(s)	297
EheI	GGCGCC	1 cut(s)	297
FaeI	CATG	1 cut(s)	277
FaiI	YATR	7 cut(s)	49, 51, 117, 146, 214, 270, 275
FaqI	GGGAC	2 cut(s)	296, 332
FatI	CATG	1 cut(s)	273
FblI	GTMKAC	1 cut(s)	213
FokI	GGATG	1 cut(s)	43
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	2 cut(s)	141, 297
HaeII	RGCGCY	1 cut(s)	299
HaeIII	GGCC	2 cut(s)	290, 377
HapII	CCGG	1 cut(s)	60
HhaI	GCGC	2 cut(s)	142, 298
Hin1I	GRCGYC	1 cut(s)	296
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	2 cut(s)	140, 296
HinP1I	GCGC	2 cut(s)	140, 296
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	60
Hpy166II	GTNNAC	2 cut(s)	31, 214
Hpy188III	TCNNGA	3 cut(s)	80, 206, 317
Hpy8I	GTNNAC	2 cut(s)	31, 214
HpyAV	CCTTC	3 cut(s)	198, 212, 236
HpyCH4III	ACNGT	2 cut(s)	35, 157
HpyCH4IV	ACGT	1 cut(s)	210
HpySE526I	ACGT	1 cut(s)	210
Hsp92I	GRCGYC	1 cut(s)	296
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	2 cut(s)	140, 296
KasI	GGCGCC	1 cut(s)	295
KpnI	GGTACC	1 cut(s)	232
Kzo9I	GATC	2 cut(s)	69, 252
LguI	GCTCTTC	1 cut(s)	22
MaeI	CTAG	1 cut(s)	182
MaeII	ACGT	1 cut(s)	210
MaeIII	GTNAC	1 cut(s)	278
MalI	GATC	2 cut(s)	71, 254
MboI	GATC	2 cut(s)	69, 252
MboII	GAAGA	1 cut(s)	9
MfeI	CAATTG	1 cut(s)	135
MluCI	AATT	3 cut(s)	129, 135, 162
Mly113I	GGCGCC	1 cut(s)	296
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	3 cut(s)	313, 316, 324
MspI	CCGG	1 cut(s)	60
MspR9I	CCNGG	3 cut(s)	61, 126, 262
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	126, 262
NarI	GGCGCC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	61
NdeII	GATC	2 cut(s)	69, 252
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	3 cut(s)	230, 297, 320
PciSI	GCTCTTC	1 cut(s)	22
PleI	GAGTC	1 cut(s)	196
PluTI	GGCGCC	1 cut(s)	299
PpsI	GAGTC	1 cut(s)	196
Psp6I	CCWGG	2 cut(s)	124, 260
PspGI	CCWGG	2 cut(s)	124, 260
PspN4I	GGNNCC	3 cut(s)	230, 297, 320
PspPI	GGNCC	2 cut(s)	288, 319
RsaI	GTAC	2 cut(s)	230, 336
RsaNI	GTAC	2 cut(s)	229, 335
SapI	GCTCTTC	1 cut(s)	22
Sau3AI	GATC	2 cut(s)	69, 252
Sau96I	GGNCC	2 cut(s)	288, 319
SchI	GAGTC	1 cut(s)	196
ScrFI	CCNGG	3 cut(s)	61, 126, 262
SetI	ASST	6 cut(s)	17, 78, 177, 213, 247, 352
SfcI	CTRYAG	1 cut(s)	156
SfoI	GGCGCC	1 cut(s)	297
SinI	GGWCC	1 cut(s)	319
Sse9I	AATT	3 cut(s)	129, 135, 162
SsiI	CCGC	1 cut(s)	226
SspDI	GGCGCC	1 cut(s)	295
SspMI	CTAG	1 cut(s)	182
StyD4I	CCNGG	3 cut(s)	59, 124, 260
TaaI	ACNGT	2 cut(s)	35, 157
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	3 cut(s)	72, 251, 361
TasI	AATT	3 cut(s)	129, 135, 162
TatI	WGTACW	1 cut(s)	334
TscAI	CASTG	2 cut(s)	38, 160
TspDTI	ATGAA	2 cut(s)	45, 139
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	38, 160
VpaK11BI	GGWCC	1 cut(s)	319
XapI	RAATTY	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.