Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0010310

Physical Location & Seq

Genomic Coordinates Reverse (-)

20654614 .. 20661197

Gene Structure 6584 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1091600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4062 bp

ATGGAGGAGGCTAGGGTTTCTGGGGACACTGGGAATGGTGCTCCCAGTGAGGAGGCGGTTCGGCCTTCGTACTGGCTGGATGCTTGTGAGGACATACCGTGTGATGTGATTGGTGATTTCGTGGAGTTCTGTGAACCTCCAGTTTGTGGTCCTCCTCTGGTGGCGGCGGTGGCCAATGGCAATGGCTGCAACCAGGAGGAGGATGGGTTGGTGGGCGATTTTTTCGGGGGGATTGATCACATTCTTGACAGTATCAAGAGCGGTGCTGGCCTCCCTGGTGCGACTGGTCCGAATTCAGATGTGAATGCCAACGGTGGTACTGGCATTGCTGTTGTTGAGGGTTGTGATAAGATTGAGCCGCCGGTGGTTGTGAATAGGGAGAATGCTGATGACTCGGTTGGACACAATGTTCGGAGTGGAGGGAGGAGTTTGGAGGCTGATAATGGAGAGAGTAAGGGTGATCGGAATGGTTATCAAAGGTTTGAAAAGAGGAGGGGTAATGGGGTTGTGAGGGAGAGAGATATGGATGGTGAAGAGAGGTTCTCCAAGAGGGTTGCTTTGGATAACGGAAGGAGGTATGGTTCAGGCAGAGGGCAATATAACATGAGGGACAAGAGTTTTGGTAGGAAGAGGCCTCGTGATTCCGAGGATATTGATCGGACGGATAGAGATAGAGATAGAGATCGGATTAGGAGAAGAGAGAATTATGGTACTTACAATAGGAGGGAGGGTGGTAGAGACAGGGAGGCAAAGGGTTATTGGGAGAGGGATAAGTTGGGAACGAATGAGCTTGTTTTTCGATTAGGGACTTATGAACCTGATCATAACAAAGAGGGTAGGATAGCTGATATGAAAAACCAGCAATTCAATGGGAAGGCTGAGAAGAAACCGGAGGAGGTTAAAGAAAAAATTCCTGAGGAACAAGCTAGGAAGTATCAATTGGATGTGCTTGAACAAGCAAAGAAGAGAAATACAATAGCTTTTCTTGAAACAGGTGCCGGAAAGACACTCATTGCCGTGCTTCTCATGCAAAGTGTTTGCAGTGATATGCAGCAAAAGCAGAACAAAAAGATGCTCGCTGTATTTCTCGTTCCTAAAGTTCCCCTTGTTTATCAGCAAGCTGAAGTTATTCGTGAGCGAACTGGTTTCCAAGTGGGCCATTATTGTGGTGAGATGGGCCAAGATTTCTGGGACACCCGAAGATGGCAGCATGAATTCGACACGAAACAGGTTCTGGTAATGACAGCTCAAATTCTGTTGAACATTCTGAGGCACAGCATTATAAAAATGGAAGCAATCAATCTCTTGATTCTGGATGAGTGTCATCACGCTGTGAAGAAACATCCGTATTCTTTAGTGATGTCTGAGTTCTATCATACAACCCCAAAGGAGAAGAGACCGTCTGTATTTGGGATGACTGCTTCTCCTGTTAATTTAAAAGGTGTTTCCAGCCAAATAGATTGTGCAATAAAGATTCGTAATCTTGAAAGTAAACTAGATTCCATTGTTTGTACCATAAAGGACCGTAAGGAGCTTGAAAAGCATGTTCCAATGCCTTCCGAAACAGTGGTGCAGTATGATAAAGGAGCTAGCTTATGGTCCCTTCATGAGCAGCTAAAAAAGATGGAAACGGAAGTTGAAGAAGCTGCAAAGTTCAGCTCTAGAAAAAGTAAATGGCAATTTATGGGAGCCAGAGATGCTGGGGCCAAGGAAGAGCTGCGCCAAGTGTATGGTGTTTCTGAAAGAACAGAAAGTGATGGGGCTGTTAACCTAATTCAAAAGTTGAGGGCTATTAATTATGCGCTCGGTGAACTGGGTCAATGGTGTGCTTACAAGGTTGCACAATCTTTCTTGACAGCCTTACAAAATGACGAGAGGGCAAACTACCAGCTTGATGTCAAGTTTCAGGAATCCTACCTGAGCAAAGTTGTAAATCTCTTACAATGTCAGCTATCAGAGGGAGCTGTTTCGGACAAGGAAACAAAAGTAGCAGATTCAGAAAATGGCGTTTCTTGTGATGGAAATGACCCTGATGAGATGGAGGAAGGAGAGCTACCTGATAGTCATGTTGTCTCTGGCGGGGAGCATGTAGATGTGATAATGGGAGCTGCTGTAGCTGATGGGAAGGTGACTCCAAAAGTGCAGTCACTGGTGAAAGTACTTCTCAAGTATCAGCATACAGAAGATTTTCGTGCAATCATCTTTGTGGAGCGAGTTGTGTCTGCTTTAGTTCTTCCCAAGGTCTTCGCAGAACTTCCTTCTTTAGGTTTTATAGAGTGTGCTAGCCTTATCGGCCACAACAATAGTCAGGAAATGAGAAGTTGCCAAATGCAGGACACTATTGCCAAATTCAAGGATGGCCGTGTGACACTGTTAGTTGCGACTAGTGTTGCTGAGGAAGGACTTGATATCCGGCAGTGCAATGTTGTTATTCGGTTTGACCTTGCAAAAACTGTTTTGGCTTACATTCAGTCCAGGGGTCGTGCTAGAAAACCTGGGTCTGATTACATCTTAATGGTGGAGAGAGGAAATCTGGCGCATGAAGCATTCTTAAGGAATGCCAGGAATAGCGAGGAGACTTTACGGAAGGAAGCAATAGAGAGAACTGACCTGAGTCATCTGAAGGATAGTGATAGGCTAATTTCAGTGGATACAACGCCAGGGACAGTGTACCAGGTGGAGTCAACCGGTGCTGTTGTGAGCTTAAACTCTGCTGTTGGACTCATCCATTTCTACTGCTCTCAGCTTCCCAGCGACAGGTACTCAATTCTTCGTCCTGAGTTTGTTATGGTGAGGCATGAGAAGCAAGGAGGTCACACTGAATATTCATGCAAACTTCAACTCCCTTGTAACGCACAATTTGAGACACTTGAGGGTCCCGCTGTTTGCTTGGCTGCTTGCAAGAAACTCCATGAGATGGGAGCATTTACCGACATGCTCTTGCCAGACAAGGGAAGCGGGGAAGAAAAAGAACAGGTTGACCAGAATGATGATGGAGATCCACTTCCTGGAACTGCTAGGCACAGAGAGTTCTATCCCGAAGGTGTAGCTAATATTCTCAAGGGAGAATGGATCTTATCTGGAAGAGATTTGGGCCGTGACTCGGAATTGATTCATGTTTACATGTATGGCGTGAAATGTGTAAACTCTGGCTCTTCAAAAGATCCTTTCTTGAATCAAGTTTCAGATTTCGCAGTTCTAGTAGGAAATGAACTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTATCGCTCGAACCATGACTACAAAGGCATCCCTTGTCTTCAGGGGTTCAATATATATTACTGAAAGTCAGTTGGCGTCCCTTAAAAGTTTTCATGTAAGATTGATGAGTATTGTATTGGACGTGGATGTCAAACCTTCCACCACTCCTTGGGATCCTGCAAAGGCTTATTTATTTGTCCCTGTGGTTAGCGATAAGTGTGTGGATCCTATGAAAGAAATAGATTGGGATCTGGTTGAAAATATAAATGGTGCAGAGGCTTGGAATAATCCCCTTCAAAGAGCTCGACCTGATGTTTCCCTTGGCACAAGTGAGCGTACTCTAGGTGGAGACAGAAGGGAGTATGGTTTCGCGAAATTACGTCATGGCATGGCTTTTGGACAAAAATCCCATCCAACCTATGGTATCAGAGGAGCTGTGGCACAGTTTGATGTTGTTAAAGCTTCCGGATTGATGCCTGATCGGGATGCCCTAGATATTAGAAGGCCGGTAGATTTGCCCAAAGACAAGTTATTTATGGCTGATCCTACATGTGTCAGTGTCGAAGGCTTGGTCGGGAGGATTGTGACAGCTGCTCACTCAGGGAAGAGGTTTTATGTGGATTCAATATGCTATGATATGACGGCAGAAAACTCTTTCCCCCGGAAAGAAGGCTACCTTGGCCCTGTGGAGTACAGCTCATATGCTGATTATTACAAGCAAAAATTTATTCTCCTAAACCTAGAAACTAGTCAATTCTTAATGGACGGCTACAATGCCCCTGAGATTATGTGCTTGAAGAAGAGGAAAGCTATGGTGGTGCTTGGTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

1354

Amino Acids

151.12

Weight (kDa)

5.73

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	310 - 476	4.8e-15	Type III restriction enzyme, res subunit
DEAD	PF00270	311 - 476	1.8e-16	DEAD/DEAH box helicase
Helicase_C	PF00271	713 - 830	6.4e-16	Helicase conserved C-terminal domain
Dicer_dimer	PF03368	905 - 983	1.8e-12	Dicer dimerisation domain
PAZ	PF02170	1266 - 1319	1e-06	PAZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01040 AT1G01040
fragaria_vesca	FvH4_7g17920 FvH4_7g17920 FvH4_7g17920 FvH4_7g17920
malus_domestica	MD01G1091600.v1.1 MD07G1161800.v1.1
prunus_persica	Prupe.2G200900_v2.0.a1
pyrus_communis	pycom01g11560 pycom07g15740
rosa_chinensis	RchiOBHm_Chr1g0361361
rosa_laevigata	RLG00000027722
rosa_multiflora	Rmu_sc0002119.1_g000026
rosa_roxburghii	Rroxscaffold_4G00295020
rosa_rugosa	Rorug01G0288900
rosa_samantha	Rh1AG299700 Rh1BG263500 Rh1CG281100 Rh1DG293500
rosa_wichuraiana	Rw1G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1283
AasI	GACNNNNNNGTC	1 cut(s)	3377
AccB1I	GGYRCC	1 cut(s)	995
AccB7I	CCANNNNNTGG	5 cut(s)	146, 2917, 3008, 3399, 3650
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	1 cut(s)	3602
AccIII	TCCGGA	1 cut(s)	3695
AciI	CCGC	8 cut(s)	56, 164, 167, 261, 359, 2079, 2880, 2958
AcoI	YGGCCR	3 cut(s)	171, 2293, 2359
AcsI	RAATTY	6 cut(s)	292, 909, 1214, 1251, 2348, 3953
AcuI	CTGAAG	3 cut(s)	1143, 2642, 3274
AcyI	GRCGYC	1 cut(s)	3326
AdeI	CACNNNGTG	1 cut(s)	1333
AfaI	GTAC	9 cut(s)	71, 319, 712, 1513, 2160, 2672, 2762, 3568, 3923
AflII	CTTAAG	1 cut(s)	2551
AflIII	ACRYGT	2 cut(s)	3123, 3779
AgeI	ACCGGT	1 cut(s)	2687
AhlI	ACTAGT	2 cut(s)	2384, 3977
AjiI	CACGTC	1 cut(s)	3373
AjnI	CCWGG	8 cut(s)	192, 274, 2474, 2494, 2561, 2659, 2673, 3007
AjuI	GAANNNNNNNTTGG	4 cut(s)	923, 955, 3891, 3923
AloI	GAACNNNNNNTCC	4 cut(s)	393, 425, 565, 597
Alw21I	GWGCWC	2 cut(s)	43, 3535
Alw26I	GTCTC	6 cut(s)	732, 1390, 2077, 2570, 2858, 3573
AlwNI	CAGNNNCTG	2 cut(s)	1234, 2149
Aor13HI	TCCGGA	1 cut(s)	3695
ApeKI	GCWGC	9 cut(s)	186, 1051, 1207, 1612, 1646, 1717, 2108, 2894, 3821
ApoI	RAATTY	6 cut(s)	292, 909, 1214, 1251, 2348, 3953
ArsI	GACNNNNNNTTYG	8 cut(s)	393, 425, 602, 634, 2129, 2161, 3786, 3818
AseI	ATTAAT	1 cut(s)	1794
AsiGI	ACCGGT	1 cut(s)	2687
Asp700I	GAANNNNTTC	4 cut(s)	909, 1128, 2187, 3111
AspLEI	GCGC	3 cut(s)	1722, 1804, 2539
AsuC2I	CCSGG	1 cut(s)	3892
AsuHPI	GGTGA	8 cut(s)	125, 470, 542, 1181, 1820, 2140, 2164, 2803
AsuNHI	GCTAGC	2 cut(s)	1589, 2282
AvaII	GGWCC	5 cut(s)	149, 287, 1522, 1599, 2876
AxyI	CCTNAGG	1 cut(s)	915
BalI	TGGCCA	1 cut(s)	173
BamHI	GGATCC	2 cut(s)	3403, 3454
BanI	GGYRCC	1 cut(s)	995
BanII	GRGCYC	1 cut(s)	3535
BarI	GAAGNNNNNNTAC	2 cut(s)	2037, 2069
BauI	CACGAG	1 cut(s)	636
BbsI	GAAGAC	2 cut(s)	2236, 3280
Bbv12I	GWGCWC	2 cut(s)	43, 3535
BbvCI	CCTCAGC	1 cut(s)	2394
BbvI	GCAGC	9 cut(s)	173, 1063, 1219, 1624, 1633, 1704, 2095, 2881, 3808
BceAI	ACGGC	5 cut(s)	1001, 2346, 3081, 3888, 4012
BciT130I	CCWGG	8 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009
BciVI	GTATCC	1 cut(s)	2644
BclI	TGATCA	2 cut(s)	235, 820
BcnI	CCSGG	1 cut(s)	3892
BcoDI	GTCTC	6 cut(s)	732, 1390, 2077, 2570, 2858, 3573
BcuI	ACTAGT	2 cut(s)	2384, 3977
BfmI	CTRYAG	1 cut(s)	2112
BfrI	CTTAAG	1 cut(s)	2551
BfuI	GTATCC	1 cut(s)	2644
BglI	GCCNNNNNGGC	1 cut(s)	2292
BmcAI	AGTACT	1 cut(s)	2160
Bme1390I	CCNGG	9 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009, 3892
Bme18I	GGWCC	5 cut(s)	149, 287, 1522, 1599, 2876
BmgBI	CACGTC	1 cut(s)	3373
BmiI	GGNNCC	9 cut(s)	997, 1601, 1690, 1705, 2877, 2878, 3405, 3456, 4057
BmrFI	CCNGG	9 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009, 3892
BmrI	ACTGGG	3 cut(s)	39, 39, 1823
BmsI	GCATC	7 cut(s)	70, 1062, 1687, 3208, 3287, 3693, 3706
BmtI	GCTAGC	2 cut(s)	1593, 2286
BmuI	ACTGGG	3 cut(s)	39, 39, 1823
BoxI	GACNNNNGTC	1 cut(s)	2613
BpiI	GAAGAC	2 cut(s)	2236, 3280
BplI	GAGNNNNNCTC	4 cut(s)	527, 559, 3911, 3943
BpmI	CTGGAG	1 cut(s)	123
Bpu10I	CCTNAGC	2 cut(s)	1919, 2394
BpuEI	CTTGAG	3 cut(s)	2150, 2891, 3044
BpuMI	CCSGG	1 cut(s)	3892
Bsa29I	ATCGAT	1 cut(s)	3233
BsaBI	GATNNNNATC	4 cut(s)	654, 681, 2997, 3477
BsaHI	GRCGYC	1 cut(s)	3326
BsaI	GGTCTC	1 cut(s)	1390
BsaWI	WCCGGW	3 cut(s)	889, 2687, 3695
Bse118I	RCCGGY	3 cut(s)	361, 2687, 3736
Bse21I	CCTNAGG	1 cut(s)	915
Bse3DI	GCAATG	4 cut(s)	187, 324, 1011, 2428
Bse8I	GATNNNNATC	4 cut(s)	654, 681, 2997, 3477
BseAI	TCCGGA	1 cut(s)	3695
BseBI	CCWGG	8 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009
BseCI	ATCGAT	1 cut(s)	3233
BseJI	GATNNNNATC	4 cut(s)	654, 681, 2997, 3477
BseMI	GCAATG	4 cut(s)	187, 324, 1011, 2428
BseRI	GAGGAG	9 cut(s)	20, 65, 144, 212, 439, 505, 908, 2588, 3675
BseXI	GCAGC	9 cut(s)	173, 1063, 1219, 1624, 1633, 1704, 2095, 2881, 3808
BseYI	CCCAGC	2 cut(s)	1700, 2750
BsgI	GTGCAG	3 cut(s)	1592, 2162, 3522
Bsh1236I	CGCG	1 cut(s)	3602
BshNI	GGYRCC	1 cut(s)	995
BshTI	ACCGGT	1 cut(s)	2687
BshVI	ATCGAT	1 cut(s)	3233
BsiHKAI	GWGCWC	2 cut(s)	43, 3535
BsiSI	CCGG	8 cut(s)	362, 890, 999, 2413, 2688, 3696, 3737, 3892
BslFI	GGGAC	9 cut(s)	38, 623, 820, 1205, 1585, 2677, 2862, 3313, 3413
BsmAI	GTCTC	6 cut(s)	732, 1390, 2077, 2570, 2858, 3573
BsmFI	GGGAC	9 cut(s)	38, 623, 820, 1205, 1585, 2677, 2862, 3313, 3413
BsmI	GAATGC	4 cut(s)	310, 388, 2546, 2563
Bso31I	GGTCTC	1 cut(s)	1390
Bsp1286I	GDGCHC	2 cut(s)	43, 3535
Bsp13I	TCCGGA	1 cut(s)	3695
Bsp68I	TCGCGA	1 cut(s)	3602
BspACI	CCGC	8 cut(s)	56, 164, 167, 261, 359, 2079, 2880, 2958
BspDI	ATCGAT	1 cut(s)	3233
BspEI	TCCGGA	1 cut(s)	3695
BspFNI	CGCG	1 cut(s)	3602
BspHI	TCATGA	1 cut(s)	1606
BspLI	GGNNCC	9 cut(s)	997, 1601, 1690, 1705, 2877, 2878, 3405, 3456, 4057
BspOI	GCTAGC	2 cut(s)	1593, 2286
BspQI	GCTCTTC	2 cut(s)	1707, 3160
BspT107I	GGYRCC	1 cut(s)	995
BspTI	CTTAAG	1 cut(s)	2551
BspTNI	GGTCTC	1 cut(s)	1390
BsrBI	CCGCTC	1 cut(s)	261
BsrDI	GCAATG	4 cut(s)	187, 324, 1011, 2428
BsrFI	RCCGGY	3 cut(s)	361, 2687, 3736
BssAI	RCCGGY	3 cut(s)	361, 2687, 3736
BssNI	GRCGYC	1 cut(s)	3326
BssSI	CACGAG	1 cut(s)	636
BssT1I	CCWWGG	5 cut(s)	1707, 2238, 3398, 3550, 3907
Bst2BI	CACGAG	1 cut(s)	636
Bst2UI	CCWGG	8 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009
BstACI	GRCGYC	1 cut(s)	3326
BstAFI	CTTAAG	1 cut(s)	2551
BstAPI	GCANNNNNTGC	1 cut(s)	186
BstC8I	GCNNGC	6 cut(s)	268, 1077, 1119, 1591, 2284, 2899
BstENI	CCTNNNNNAGG	1 cut(s)	2262
BstFNI	CGCG	1 cut(s)	3602
BstHHI	GCGC	3 cut(s)	1722, 1804, 2539
BstMAI	GTCTC	6 cut(s)	732, 1390, 2077, 2570, 2858, 3573
BstNI	CCWGG	8 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009
BstNSI	RCATGY	5 cut(s)	1547, 2090, 2938, 3127, 3783
BstPAI	GACNNNNGTC	1 cut(s)	2613
BstSCI	CCNGG	9 cut(s)	192, 274, 2474, 2494, 2561, 2659, 2673, 3007, 3890
BstSFI	CTRYAG	1 cut(s)	2112
BstUI	CGCG	1 cut(s)	3602
BstV1I	GCAGC	9 cut(s)	173, 1063, 1219, 1624, 1633, 1704, 2095, 2881, 3808
BstV2I	GAAGAC	2 cut(s)	2236, 3280
BstX2I	RGATCY	7 cut(s)	2998, 3072, 3163, 3244, 3403, 3454, 3478
BstXI	CCANNNNNNTGG	2 cut(s)	1166, 1730
BstYI	RGATCY	7 cut(s)	2998, 3072, 3163, 3244, 3403, 3454, 3478
Bsu15I	ATCGAT	1 cut(s)	3233
Bsu36I	CCTNAGG	1 cut(s)	915
BsuI	GTATCC	1 cut(s)	2644
BsuTUI	ATCGAT	1 cut(s)	3233
BtrI	CACGTC	1 cut(s)	3373
BtsI	GCAGTG	2 cut(s)	1048, 2423
BtuMI	TCGCGA	1 cut(s)	3602
Cac8I	GCNNGC	6 cut(s)	268, 1077, 1119, 1591, 2284, 2899
CaiI	CAGNNNCTG	2 cut(s)	1234, 2149
CciI	TCATGA	1 cut(s)	1606
CfoI	GCGC	3 cut(s)	1722, 1804, 2539
Cfr10I	RCCGGY	3 cut(s)	361, 2687, 3736
ClaI	ATCGAT	1 cut(s)	3233
CseI	GACGC	1 cut(s)	3315
CsiI	ACCWGGT	1 cut(s)	2673
Csp6I	GTAC	9 cut(s)	70, 318, 711, 1512, 2159, 2671, 2761, 3567, 3922
CspAI	ACCGGT	1 cut(s)	2687
CviQI	GTAC	9 cut(s)	70, 318, 711, 1512, 2159, 2671, 2761, 3567, 3922
DraI	TTTAAA	1 cut(s)	1437
DraIII	CACNNNGTG	1 cut(s)	1333
DrdI	GACNNNNNNGTC	1 cut(s)	3377
DseDI	GACNNNNNNGTC	1 cut(s)	3377
EaeI	YGGCCR	3 cut(s)	171, 2293, 2359
Ecl136II	GAGCTC	1 cut(s)	3533
Eco130I	CCWWGG	5 cut(s)	1707, 2238, 3398, 3550, 3907
Eco147I	AGGCCT	1 cut(s)	634
Eco24I	GRGCYC	1 cut(s)	3535
Eco31I	GGTCTC	1 cut(s)	1390
Eco32I	GATATC	1 cut(s)	2410
Eco47I	GGWCC	5 cut(s)	149, 287, 1522, 1599, 2876
Eco53kI	GAGCTC	1 cut(s)	3533
Eco57I	CTGAAG	3 cut(s)	1143, 2642, 3274
Eco81I	CCTNAGG	1 cut(s)	915
EcoICRI	GAGCTC	1 cut(s)	3533
EcoNI	CCTNNNNNAGG	1 cut(s)	2262
EcoO109I	RGGNCCY	1 cut(s)	2876
EcoRI	GAATTC	2 cut(s)	292, 1214
EcoRII	CCWGG	8 cut(s)	192, 274, 2474, 2494, 2561, 2659, 2673, 3007
EcoRV	GATATC	1 cut(s)	2410
EcoT14I	CCWWGG	5 cut(s)	1707, 2238, 3398, 3550, 3907
EcoT38I	GRGCYC	1 cut(s)	3535
ErhI	CCWWGG	5 cut(s)	1707, 2238, 3398, 3550, 3907
FalI	AAGNNNNNCTT	4 cut(s)	1089, 1121, 3891, 3923
FaqI	GGGAC	9 cut(s)	38, 623, 820, 1205, 1585, 2677, 2862, 3313, 3413
FauI	CCCGC	3 cut(s)	2072, 2887, 2951
FauNDI	CATATG	1 cut(s)	3931
FbaI	TGATCA	2 cut(s)	235, 820
FriOI	GRGCYC	1 cut(s)	3535
GlaI	GCGC	3 cut(s)	1721, 1803, 2538
GsaI	CCCAGC	2 cut(s)	1704, 2754
GsuI	CTGGAG	1 cut(s)	123
HapII	CCGG	8 cut(s)	362, 890, 999, 2413, 2688, 3696, 3737, 3892
HgaI	GACGC	1 cut(s)	3315
HhaI	GCGC	3 cut(s)	1722, 1804, 2539
Hin1I	GRCGYC	1 cut(s)	3326
Hin6I	GCGC	3 cut(s)	1720, 1802, 2537
HinP1I	GCGC	3 cut(s)	1720, 1802, 2537
HincII	GTYRAC	3 cut(s)	1768, 2685, 2980
HindII	GTYRAC	3 cut(s)	1768, 2685, 2980
HindIII	AAGCTT	1 cut(s)	3690
HpaI	GTTAAC	1 cut(s)	1768
HpaII	CCGG	8 cut(s)	362, 890, 999, 2413, 2688, 3696, 3737, 3892
HphI	GGTGA	8 cut(s)	125, 470, 542, 1181, 1820, 2140, 2164, 2803
Hpy166II	GTNNAC	9 cut(s)	134, 1493, 1768, 1811, 2671, 2685, 2980, 3121, 3145
Hpy8I	GTNNAC	9 cut(s)	134, 1493, 1768, 1811, 2671, 2685, 2980, 3121, 3145
HpyCH4IV	ACGT	2 cut(s)	3372, 3610
HpySE526I	ACGT	2 cut(s)	3372, 3610
Hsp92I	GRCGYC	1 cut(s)	3326
HspAI	GCGC	3 cut(s)	1720, 1802, 2537
KflI	GGGWCCC	1 cut(s)	2876
Kpn2I	TCCGGA	1 cut(s)	3695
Ksp22I	TGATCA	2 cut(s)	235, 820
KspAI	GTTAAC	1 cut(s)	1768
LguI	GCTCTTC	2 cut(s)	1707, 3160
Lsp1109I	GCAGC	9 cut(s)	173, 1063, 1219, 1624, 1633, 1704, 2095, 2881, 3808
LweI	GCATC	7 cut(s)	70, 1062, 1687, 3208, 3287, 3693, 3706
MabI	ACCWGGT	1 cut(s)	2673
MaeII	ACGT	2 cut(s)	3372, 3610
MaeIII	GTNAC	7 cut(s)	2128, 2145, 2365, 2813, 2849, 3098, 3814
MbiI	CCGCTC	1 cut(s)	261
MfeI	CAATTG	1 cut(s)	938
MflI	RGATCY	7 cut(s)	2998, 3072, 3163, 3244, 3403, 3454, 3478
MhlI	GDGCHC	2 cut(s)	43, 3535
MlsI	TGGCCA	1 cut(s)	173
MluNI	TGGCCA	1 cut(s)	173
MlyI	GAGTC	6 cut(s)	386, 2125, 2623, 2690, 2715, 3095
MmeI	TCCRAC	3 cut(s)	379, 2698, 3668
Mox20I	TGGCCA	1 cut(s)	173
MroI	TCCGGA	1 cut(s)	3695
MroXI	GAANNNNTTC	4 cut(s)	909, 1128, 2187, 3111
MscI	TGGCCA	1 cut(s)	173
MslI	CAYNNNNRTG	5 cut(s)	1016, 1164, 2091, 2204, 2513
Msp20I	TGGCCA	1 cut(s)	173
MspA1I	CMGCKG	2 cut(s)	2882, 3821
MspCI	CTTAAG	1 cut(s)	2551
MspI	CCGG	8 cut(s)	362, 890, 999, 2413, 2688, 3696, 3737, 3892
MspR9I	CCNGG	9 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009, 3892
MunI	CAATTG	1 cut(s)	938
Mva1269I	GAATGC	4 cut(s)	310, 388, 2546, 2563
MvaI	CCWGG	8 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009
MvnI	CGCG	1 cut(s)	3602
NciI	CCSGG	1 cut(s)	3892
NdeI	CATATG	1 cut(s)	3931
NheI	GCTAGC	2 cut(s)	1589, 2282
NlaIV	GGNNCC	9 cut(s)	997, 1601, 1690, 1705, 2877, 2878, 3405, 3456, 4057
NmuCI	GTSAC	6 cut(s)	2128, 2145, 2365, 2813, 3098, 3814
NruI	TCGCGA	1 cut(s)	3602
NspI	RCATGY	5 cut(s)	1547, 2090, 2938, 3127, 3783
PagI	TCATGA	1 cut(s)	1606
PceI	AGGCCT	1 cut(s)	634
PciI	ACATGT	2 cut(s)	3123, 3779
PciSI	GCTCTTC	2 cut(s)	1707, 3160
PctI	GAATGC	4 cut(s)	310, 388, 2546, 2563
PdmI	GAANNNNTTC	4 cut(s)	909, 1128, 2187, 3111
PfeI	GAWTC	9 cut(s)	641, 1309, 1474, 1499, 1910, 1994, 3112, 3175, 3851
PflMI	CCANNNNNTGG	5 cut(s)	146, 2917, 3008, 3399, 3650
PfoI	TCCNGGA	1 cut(s)	3007
PinAI	ACCGGT	1 cut(s)	2687
PleI	GAGTC	6 cut(s)	386, 2125, 2622, 2689, 2715, 3095
PpsI	GAGTC	6 cut(s)	386, 2125, 2622, 2689, 2715, 3095
PpuMI	RGGWCCY	1 cut(s)	2876
PscI	ACATGT	2 cut(s)	3123, 3779
PshAI	GACNNNNGTC	1 cut(s)	2613
PshBI	ATTAAT	1 cut(s)	1794
PsiI	TTATAA	1 cut(s)	1283
Psp124BI	GAGCTC	1 cut(s)	3535
Psp5II	RGGWCCY	1 cut(s)	2876
Psp6I	CCWGG	8 cut(s)	192, 274, 2474, 2494, 2561, 2659, 2673, 3007
PspFI	CCCAGC	2 cut(s)	1700, 2750
PspGI	CCWGG	8 cut(s)	192, 274, 2474, 2494, 2561, 2659, 2673, 3007
PspN4I	GGNNCC	9 cut(s)	997, 1601, 1690, 1705, 2877, 2878, 3405, 3456, 4057
PspPPI	RGGWCCY	1 cut(s)	2876
PsrI	GAACNNNNNNTAC	4 cut(s)	1074, 1106, 3253, 3285
PstNI	CAGNNNCTG	2 cut(s)	1234, 2149
PsuI	RGATCY	7 cut(s)	2998, 3072, 3163, 3244, 3403, 3454, 3478
PvuII	CAGCTG	1 cut(s)	3821
RruI	TCGCGA	1 cut(s)	3602
RsaI	GTAC	9 cut(s)	71, 319, 712, 1513, 2160, 2672, 2762, 3568, 3923
RsaNI	GTAC	9 cut(s)	70, 318, 711, 1512, 2159, 2671, 2761, 3567, 3922
RseI	CAYNNNNRTG	5 cut(s)	1016, 1164, 2091, 2204, 2513
SacI	GAGCTC	1 cut(s)	3535
SapI	GCTCTTC	2 cut(s)	1707, 3160
ScaI	AGTACT	1 cut(s)	2160
SchI	GAGTC	6 cut(s)	386, 2125, 2623, 2690, 2715, 3095
ScrFI	CCNGG	9 cut(s)	194, 276, 2476, 2496, 2563, 2661, 2675, 3009, 3892
SduI	GDGCHC	2 cut(s)	43, 3535
SexAI	ACCWGGT	1 cut(s)	2673
SfaNI	GCATC	7 cut(s)	70, 1062, 1687, 3208, 3287, 3693, 3706
SfcI	CTRYAG	1 cut(s)	2112
SgrAI	CRCCGGYG	1 cut(s)	361
SinI	GGWCC	5 cut(s)	149, 287, 1522, 1599, 2876
SmiMI	CAYNNNNRTG	5 cut(s)	1016, 1164, 2091, 2204, 2513
SmlI	CTYRAG	4 cut(s)	2165, 2551, 2870, 3059
SmoI	CTYRAG	4 cut(s)	2165, 2551, 2870, 3059
SpeI	ACTAGT	2 cut(s)	2384, 3977
SseBI	AGGCCT	1 cut(s)	634
SsiI	CCGC	8 cut(s)	56, 164, 167, 261, 359, 2079, 2880, 2958
SspI	AATATT	2 cut(s)	2825, 3055
SstI	GAGCTC	1 cut(s)	3535
StuI	AGGCCT	1 cut(s)	634
StyD4I	CCNGG	9 cut(s)	192, 274, 2474, 2494, 2561, 2659, 2673, 3007, 3890
StyI	CCWWGG	5 cut(s)	1707, 2238, 3398, 3550, 3907
TaiI	ACGT	2 cut(s)	3375, 3613
TaqI	TCGA	7 cut(s)	799, 1218, 3233, 3239, 3259, 3535, 3792
TatI	WGTACW	2 cut(s)	2158, 3921
TauI	GCSGC	2 cut(s)	167, 361
TfiI	GAWTC	9 cut(s)	641, 1309, 1474, 1499, 1910, 1994, 3112, 3175, 3851
TseFI	GTSAC	6 cut(s)	2128, 2145, 2365, 2813, 3098, 3814
TseI	GCWGC	9 cut(s)	186, 1051, 1207, 1612, 1646, 1717, 2108, 2894, 3821
Tsp45I	GTSAC	6 cut(s)	2128, 2145, 2365, 2813, 3098, 3814
TspGWI	ACGGA	5 cut(s)	582, 677, 1335, 1646, 2599
Van91I	CCANNNNNTGG	5 cut(s)	146, 2917, 3008, 3399, 3650
Vha464I	CTTAAG	1 cut(s)	2551
VpaK11BI	GGWCC	5 cut(s)	149, 287, 1522, 1599, 2876
VspI	ATTAAT	1 cut(s)	1794
XagI	CCTNNNNNAGG	1 cut(s)	2262
XapI	RAATTY	6 cut(s)	292, 909, 1214, 1251, 2348, 3953
XbaI	TCTAGA	1 cut(s)	1661
XceI	RCATGY	5 cut(s)	1547, 2090, 2938, 3127, 3783
XcmI	CCANNNNNNNNNTGG	4 cut(s)	200, 866, 2990, 3647
XmnI	GAANNNNTTC	4 cut(s)	909, 1128, 2187, 3111
ZrmI	AGTACT	1 cut(s)	2160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.