Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0010310

Physical Location & Seq

Genomic Coordinates Forward (+)

14924608 .. 14934115

Gene Structure 9508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00295020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 5691 bp

ATGGATACAGAGGCGGCTAGGGTTACAGGGGACAGTGGTGGCAATGGGGGAGAGGCGGTTCGGGCTTCTTACTGGCTGGATGCTTGTGAGGACATTGGGGATTTTGTGGACTTTTCCGAAAATTCGGGTGCTACGGCTGTGGTGGCGAGTGGGAATGGTTGCAATCAGGAGGAGGTGGGTGATTTTTTCGGCGGGATTGATCACATTCTTGACAGTATCAAAAGCGGAGCTGGATTGCCGGATGGGAAGGGGGATGGGGTAGTGAGCAGTGGCAATGTGGAGGAGGTTGGGGCGACTGGCGTTTCCAATGGACTGAGTGGTGAGAATGGACAGAGTGGGGGTCGAAATTCTGAGGGTGCTAATGGAGATGGGAGAGTGGCGGTGGTGGCGGCTTCTGCTGCTAAGCGTAATCACAATGGTTTGAGCAAGTATGAGAGTAATGGGAGGTGCAATCGGGGTGTAAGGGAAAGAGATGTGAGTGGTGAAGAGCGGTGCCCCAAGAGGGTTGCGGTAGATAATGGTAGGAATGAGAGGTATAGTTCAGGCAGAGTGCAATATCAGCTGAGGGAGAGGAATTCTGGTCGGAAGAGGCCTCGTGATCCTCGGGATGACATTGATAGGAGGGATAGGGACAGGGATAGAGATCGGACTAGGAGAAGAGAGAGTTATGGTAGTAATAGGAGGGATAGTAGAGATTGGGAAGCAAAGGGCTATTGGGAGAGGGATAAATTGGGGTCAAATGAGCTTGTTTTTAGATTAGGAGCTTATGAACCTCATCAGAAGAAAGAGGAGAAAGTCGCTAATGATAAAATCAATGAAAAGGATGTGAAGAAGTCTGAAGAGCTGAAGAAAGAAAAGATTCCTGAGGAACGAGCCAGACAGTATCAATTGGATGTTCTTGAACAGGCAAAGAAGAGCAATACGATAGCTTTTCTTGAAACTGGGGCTGGGAAGACACTCATTGCCATTCTCCTCATGCAAAGTGTCTGCAATGATTTGCAAAAGAAGAATAAAAAGATGCTTTCTGTGTTTCTAGTTCCTAAAGTTCCGCTTGTTTATCAGCAAGCAGAAGTTATTCGCGAGCGAACTGGTTTCCAAGTGGGCCATTTTTGTGGTGAGATGGGTCAAGATTTTTGGGATACACGAAGATGGCAGCGTGAGTTTGATACTAAACAGGTTCTAGTAATGACAGCTCAAATTCTATTGAACATTCTAAGACACAGCATTATAAAGATGGAATCGATTAATCTATTGATTCTGGATGAGTGCCATCACGCTGTGAAGAAACATCCTTACTCTTTAGTGATGTCCGAGTTCTATCATACAACCCCAAAAGAGAAGAGACCATCTGTATTTGGAATGACTGCTTCTCCTGTTAACTTAAAAGGTGTTTCCAATCAACTAGATTGTGCAATAAAGATTCGTAATCTTGAAAGTAAACTGGATTCCGTTGTTTGCACCATAAAGGACCGGAAGGACCTGGAAAAGCATGTTCCAATGCCCTCAGAAATTGTTGTGGAGTATGACAAAGCAGCCAGCTTATGGTCCTTTCACGAACAGCTAAAACAAATGGAAGTGGAAGTTGAAGAAGCTGCAAAGTCTAGCTCTAGAAGAAGTAAATGGCAGTTTATGGGAGCTAGAGATGCTGGGGCCAAGGAAGAGCTACGCCAAGTGTATGGTGTTTCAGAAAGAACAGAAAGTGATGGGGCTGTCAACCTAATTCAGAAGCTGAGGGCTATCAATTATGCACTTGGTGAACTGGGTCAGTGGTGCGCTTACAAGGTGGCACAATCATTCTTGACAGCTTTACAAAATGATGAGAGGGCAAACTACCAGCTTGATGTCAAGTTTCAAGAAACTTACCTGATCAGAGTTGTATCTCTTTTACAATGTCATCTGTCAGAGGGCGCTGCTTCTGACAAGGAAACAAAACTACCAGATTCAGAGAGTGGCGTTTCTCATGACGAAATTGAGGAAGGAGAGCTACCTGATAGTCATGATATGTCCCTGACTAATTTAGTGTCATCTGTTGTCCATTTTATTGCTCATGAAGTATCCTTATCATTGACTATCAATGAAATCCTATGTCTTCTAGGGTCTAGGATTACAGTTGTTTCTGGTGGGGAGCATGTAGATGTGATAATAGGAGCTGCTGTAGCTGATGGGAAGGTGACGCCAAAAGTGCAGTCACTAATTAAAGTTCTTCTCAAGTATCAGCATACAGAAGATTTCCGTGCAATCATCTTTGTGGAGCGAGTTGTCTCCGCTTTAGTTCTTCCTAAGGTCTTTGCTGAGCTTCCATCTCTAGGTTTTATCGAGTGTGCAAGCTTGATTGGCCACAATAATAGTCAGGAAATGCGAAGTAGCCAAATGCAGGACACAATTGCCAAATTCAAGGATGGTCGTGTGACATTGTTAGTTGCAACTAGTGTTGCTGAGGAAGGACTTGATATTCGACAGTGCAATGTTGTTATTCGCTTCGACCTTGCCAAAACTGTTTTGGCTTATATTCAGTCTAGGGGCCGTGCTAGAAAACCTGGGTCAGATTATATCTTGATGGTGGAAAGGTCAAATCTGTCACATGAAGCATTCTTACGGAATGCTAGAAATAGCGAGGAGACTTTACGGAAAGAAGCAATAGAGAGGACTGACCTGAGTGATTTGAAGGATACTTCAAGGTTAATTTCAGTGGAAACAGCACCAGGTACAGTGTATCAGGTGGAATCAACTGGTGCTTTGGTGAGCTTAAATTCTGCTGTTGGACTAATCCATTTCTACTGCTCTCAGCTTCCGAGTGACAGGTACTCAATACTTCATCCTGAATTTGTTATGGTGAGGCATGAGAAGCAAGAAGGCCCGACTGAATATTCATGCAAGCTTCAACTCCCTTGTAATGCACCATTTGAGACACTTGAAGGCCCTGTGTGCAGTTCAATGCACCTTGCGCAACAGGCTGTTTGTTTGGCTGCTTGTAAGAAACTCCATGAGATGGGAGCATTTACCGACATGCTATTGCCCGACAGGGGAGTTGGGGAAGAAAAAGAAAAGGTTGACAAGAATGATGAAGGAGATCCACTTCCTGGAACTGCTAGGCACAGAGAGTTCTATCCCGAAGGCGTAGCTGATATTCTCCAGGGAGAATGGATCTTAGCTGGAAGAGATCTTGGCAATGAGGCCAAATTGATTCATGTTTACATGTATTCTGTGAAATGTGTAGACATTGGCTCTTCAAAAGATCCTTTCTTGACTCAAGTTTCAGATTTTGCAATTCTGTTAGGCAATGAGCTGGATGCAGAGGTGTTATCGATGTCGATGGATCTATTTGTTGCTCGGACCATGACTACAAAGGCTTCCCTTGTCTTTAGGGGTTCAATTCGTATTACTGAAAGTCAGTTGGCATCCCTTAAAAGTTTCCATGTAAGATTGATGAGTATTGTACTGGATGTGGATGTTGAACCTTCCACCACTCCTTGGGATCCTGCAAAGGCTTATTTATTTGTACCCGTGGTTAGCGATAAATGTGGAGATCCTATGAAAGAAATAGATTGGAATCTGGTTGAAAATATAATTGGTGCGGATGCGTGGAACAATCCCCTTCAAAGAGCTAGGCCTGATGTTTACCTTGGCACAAACGAGCGAACCCTAGGAGGTGACAGAAGGGAGTATGGTTTTGGTAAACTGCGTCATGGCATGGCTTTTGGGCAAAAATCCCATCCAACCTATGGTATCAGAGGAGCTGTGGCACAGTTTGATGTTGTTAAAGCTTCTGGACTGATCCCTGATCGGGCTGCCTTTGAAATGCAAAAGGATGTGGATCTACCGCAACGCAAGTTACTGATGGCAGATAGTTGTACCAATGTTGAACATTTGGTAGGGAAAATTGTGACAGCTGCTCACTCGGGGAAGAGATTTTATGTTGATTCAATATGCTATGATATGACTGCAGAAAACTCTTTCCCGAGGAAAGAAGGTTATCTTGGCCCTCTGGAGTACAGCTCATATGCTGATTATTACAAGCAAAAGTATGGAGTTGAGTTGATGTATAAGAAACAACCTCTAATAAAAGGACGTGGTGTCTCATATTGTAAGAATCTCCTGTCCCCCGGTTTGACCACATGGAAGATTTTGGAAGCATTGACTGCTGCTTCATGCCAGGAGACATTTTGCTATGAAAGAGCTGAGCTTCTGGGTGATGCCTACCTCAAATGGGTTGTTAGTCGATATCTTTTTCTTAAATACCCTCAGAAACATGAAGGTCAGCTTACTAGGATGAGACAACAAATGGTCAGTAACATGGTTTTGTATCATTATGCATTGAAAAGAGGACTTCAATCATATATCCAAGCAGATCGCTTTGCTCCGTCTCGATGGGCGGCTCCTGGGGTGTTGCCTGTCTTTGATGAATATACAAAGGATGAAGAATCATCATTGTTTGACCAAGAGGATGTGACTCGACGGAAAACAGATGAACCGGTTAATGAATATGAGGATGATGAATTGGAGGATGGCGAGCTGGAGAGTGACTTGAGTTCTTATAGAGTCCTGTCAAGCAAGACACTTGCAGATGTTGTTGAAGCGCTTATTGGGGTTTATTATGTAGAAGGTGGGAAAAATGCTGCTAACCATCTTATGAAATGGGTTGGAATTGATGTAGAGTTTAATGCTGATGAGATAGAGAGCACAACAAGGCCATCTAATGTTCCAGATAGCATTCTTAGGAGCATCGACTTTGATGCGTTAGAGGGTGCTTTGAATATTAAATTTAGAGACAAGGGCCTCTTGGTGGAAGCCATTAGTCATGCTTCCCGACCATCTTCTGGAGTAGCCTGCTATCAGCGGTTGGAGTTTGTGGGTGATGCTGTCTTAGATCATCTCATCACAAAGCACTTGTTCTTCACATACACAAATCTGCCTCCAGGCAGGTTGACAGATCTTAGAGCTGCTGCTGTTAACAATGAAAATTTTGCACGTGTTGCTGTAAAACATAATCTCCATCTACACCTTCGACATGGATCCAGTGCTCTTGAAAGACAGATTCATGACTTTGTGAAGGAAGCTGCAAATGAATTAACAAAGCCTGGGTTCAACTCATTTGGTTTGGGAGATTGTAAAGCTCCCAAAGTTCTTGGTGACATTATTGAATCTATTGCCGGTGCCATTTTTCTTGATAGTGGACGTGATACTGCAGTTGTTTGGAAGGTGTTTCAACCTCTGCTTCAACCAATGGTCACCCCAGAGACACTACCAATGCATCCGGTCCGTGAGCTGCAAGAAAGATGCCAGCAACAGGCTGAAGGCTTGGAATACAAAGCCAGTCGAAGTGGCAATTTGGCTACTGTTGAAGTCTTGATCGATGGTGTCAAGGTGGGAATTGCTCAGAATCCACAAAAGAAGATGGCACAGAAACTGGCTGCCAGGAATGCTCTTGCTGCTTTAAAAGATAAGGACACAGCTGAAGCAAAGGAGAGGCAGGAGAGGGAGGAGGAAGATAACGGGAAGAAGAAGAAGAATGGTAGCCAAACATTTACCAGGCAAACCTTGAATGACATATGCTTGCGTAAAAACTGGCCTATGCCATTCTACAGGGGATGGATAGATGAATGCGTAGGAGAGCCTATGCCGAGTGTCAAGAAAGCCAAAGACTCGGCAGCAGTTCTTCTATTGGAATTATTGAATAAGTTATACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

1896

Amino Acids

211.96

Weight (kDa)

5.97

Isoelectric Point (pI)

40.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ResIII	PF04851	293 - 458	1.3e-14	Type III restriction enzyme, res subunit
DEAD	PF00270	294 - 458	8.7e-16	DEAD/DEAH box helicase
Helicase_C	PF00271	727 - 844	1.6e-16	Helicase conserved C-terminal domain
Dicer_dimer	PF03368	919 - 1007	4.2e-22	Dicer dimerisation domain
PAZ	PF02170	1287 - 1358	8.7e-14	PAZ domain
Ribonucleas_3_3	PF14622	1380 - 1449	1.1e-07	Ribonuclease-III-like
Ribonuclease_3	PF00636	1391 - 1536	2.6e-21	Ribonuclease III domain
Ribonucleas_3_3	PF14622	1590 - 1730	1.5e-13	Ribonuclease-III-like
Ribonuclease_3	PF00636	1612 - 1725	1.7e-22	Ribonuclease III domain
dsrm	PF00035	1752 - 1812	9.7e-06	Double-stranded RNA binding motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01040 AT1G01040
fragaria_vesca	FvH4_7g17920 FvH4_7g17920 FvH4_7g17920 FvH4_7g17920
malus_domestica	MD01G1091600.v1.1 MD07G1161800.v1.1
prunus_persica	Prupe.2G200900_v2.0.a1
pyrus_communis	pycom01g11560 pycom07g15740
rosa_chinensis	RchiOBHm_Chr1g0361361
rosa_laevigata	RLG00000027722
rosa_multiflora	Rmu_sc0002119.1_g000026
rosa_roxburghii	Rroxscaffold_4G00295020
rosa_rugosa	Rorug01G0288900
rosa_samantha	Rh1AG299700 Rh1BG263500 Rh1CG281100 Rh1DG293500
rosa_wichuraiana	Rw1G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1229
Acc16I	TGCGCA	1 cut(s)	2946
Acc36I	ACCTGC	1 cut(s)	4911
AccB1I	GGYRCC	2 cut(s)	492, 5153
AccB7I	CCANNNNNTGG	6 cut(s)	1542, 2989, 3080, 3471, 3722, 4817
AccBSI	CCGCTC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	3216
AccII	CGCG	1 cut(s)	1080
AcoI	YGGCCR	1 cut(s)	2335
AcsI	RAATTY	9 cut(s)	121, 346, 574, 1197, 2390, 2749, 2822, 4760, 4960
AcuI	CTGAAG	4 cut(s)	858, 866, 5313, 5475
AcvI	CACGTG	1 cut(s)	4970
AcyI	GRCGYC	1 cut(s)	2174
AdeI	CACNNNGTG	2 cut(s)	1279, 1754
AfaI	GTAC	6 cut(s)	2707, 2804, 3438, 3501, 3853, 3992
AfeI	AGCGCT	1 cut(s)	4578
AflIII	ACRYGT	2 cut(s)	3195, 4969
AgeI	ACCGGT	1 cut(s)	4471
AhdI	GACNNNNNGTC	1 cut(s)	4073
AhlI	ACTAGT	1 cut(s)	2426
AjiI	CACGTC	2 cut(s)	4070, 5177
AjuI	GAANNNNNNNTTGG	6 cut(s)	3552, 3584, 3960, 3992, 4566, 4598
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
Alw21I	GWGCWC	2 cut(s)	4682, 5023
AlwNI	CAGNNNCTG	2 cut(s)	1729, 5407
Ama87I	CYCGRG	3 cut(s)	603, 3898, 3958
Aor51HI	AGCGCT	1 cut(s)	4578
ApoI	RAATTY	9 cut(s)	121, 346, 574, 1197, 2390, 2749, 2822, 4760, 4960
ArsI	GACNNNNNNTTYG	4 cut(s)	2171, 2203, 2436, 2468
AseI	ATTAAT	1 cut(s)	1245
AsiGI	ACCGGT	1 cut(s)	4471
Asp700I	GAANNNNTTC	2 cut(s)	858, 1074
AspA2I	CCTAGG	1 cut(s)	3643
AspLEI	GCGC	4 cut(s)	1775, 1910, 2947, 4579
AsuC2I	CCSGG	1 cut(s)	4104
AvaI	CYCGRG	3 cut(s)	603, 3898, 3958
AvaII	GGWCC	5 cut(s)	1468, 1477, 1545, 3333, 5257
AvrII	CCTAGG	1 cut(s)	3643
AxyI	CCTNAGG	2 cut(s)	864, 2280
BaeGI	GKGCMC	1 cut(s)	497
BaeI	ACNNNNGTAYC	2 cut(s)	5172, 5205
BalI	TGGCCA	1 cut(s)	2337
BamHI	GGATCC	2 cut(s)	3475, 5012
BanI	GGYRCC	2 cut(s)	492, 5153
BarI	GAAGNNNNNNTAC	4 cut(s)	1968, 2000, 2577, 2609
BauI	CACGAG	1 cut(s)	594
BbrPI	CACGTG	1 cut(s)	4970
BbsI	GAAGAC	2 cut(s)	959, 2081
Bbv12I	GWGCWC	2 cut(s)	4682, 5023
BbvCI	CCTCAGC	3 cut(s)	563, 1730, 2436
BceAI	ACGGC	2 cut(s)	150, 2508
BcgI	CGANNNNNNTGC	2 cut(s)	4715, 4749
BciVI	GTATCC	3 cut(s)	1132, 2065, 2662
BclI	TGATCA	2 cut(s)	199, 1866
BcnI	CCSGG	1 cut(s)	4104
BcuI	ACTAGT	1 cut(s)	2426
BfmI	CTRYAG	4 cut(s)	2154, 3942, 5184, 5581
BfoI	RGCGCY	2 cut(s)	1911, 4580
BfuAI	ACCTGC	1 cut(s)	4911
BfuI	GTATCC	3 cut(s)	1132, 2065, 2662
BglII	AGATCT	2 cut(s)	3160, 4930
BlnI	CCTAGG	1 cut(s)	3643
BlpI	GCTNAGC	3 cut(s)	402, 2292, 4179
Bme18I	GGWCC	5 cut(s)	1468, 1477, 1545, 3333, 5257
BmeRI	GACNNNNNGTC	1 cut(s)	4073
BmeT110I	CYCGRG	3 cut(s)	603, 3898, 3958
BmgBI	CACGTC	2 cut(s)	4070, 5177
BmiI	GGNNCC	7 cut(s)	494, 1651, 2522, 3477, 4377, 5014, 5155
BmrI	ACTGGG	2 cut(s)	951, 1769
BmuI	ACTGGG	2 cut(s)	951, 1769
BpiI	GAAGAC	2 cut(s)	959, 2081
BplI	GAGNNNNNCTC	2 cut(s)	3980, 4012
BpmI	CTGGAG	5 cut(s)	3116, 4007, 4535, 4839, 4899
Bpu10I	CCTNAGC	3 cut(s)	563, 1730, 2436
Bpu1102I	GCTNAGC	3 cut(s)	402, 2292, 4179
BpuEI	CTTGAG	3 cut(s)	2192, 3234, 4546
BpuMI	CCSGG	1 cut(s)	4104
Bsa29I	ATCGAT	3 cut(s)	1241, 3305, 5352
BsaAI	YACGTR	1 cut(s)	4970
BsaBI	GATNNNNATC	3 cut(s)	642, 3549, 3813
BsaHI	GRCGYC	1 cut(s)	2174
BsaI	GGTCTC	1 cut(s)	1336
BsaWI	WCCGGW	3 cut(s)	1470, 4471, 5254
Bse118I	RCCGGY	2 cut(s)	4471, 5150
Bse21I	CCTNAGG	2 cut(s)	864, 2280
Bse3DI	GCAATG	7 cut(s)	49, 280, 960, 997, 2470, 3175, 3286
Bse8I	GATNNNNATC	3 cut(s)	642, 3549, 3813
BseCI	ATCGAT	3 cut(s)	1241, 3305, 5352
BseJI	GATNNNNATC	3 cut(s)	642, 3549, 3813
BseMI	GCAATG	7 cut(s)	49, 280, 960, 997, 2470, 3175, 3286
BseRI	GAGGAG	7 cut(s)	185, 296, 803, 962, 2630, 3747, 5495
BseSI	GKGCMC	1 cut(s)	497
BseYI	CCCAGC	2 cut(s)	947, 1646
BsgI	GTGCAG	2 cut(s)	2204, 2947
Bsh1236I	CGCG	1 cut(s)	1080
BshNI	GGYRCC	2 cut(s)	492, 5153
BshTI	ACCGGT	1 cut(s)	4471
BshVI	ATCGAT	3 cut(s)	1241, 3305, 5352
BsiHKAI	GWGCWC	2 cut(s)	4682, 5023
BsiHKCI	CYCGRG	3 cut(s)	603, 3898, 3958
BsiSI	CCGG	6 cut(s)	239, 1471, 4104, 4472, 5151, 5255
BslFI	GGGAC	4 cut(s)	44, 644, 1990, 4084
BsmBI	CGTCTC	1 cut(s)	4368
BsmFI	GGGAC	4 cut(s)	44, 644, 1990, 4084
BsmI	GAATGC	5 cut(s)	2588, 2605, 4710, 5425, 5606
Bso31I	GGTCTC	1 cut(s)	1336
BsoBI	CYCGRG	3 cut(s)	603, 3898, 3958
Bsp1286I	GDGCHC	3 cut(s)	497, 4682, 5023
Bsp1720I	GCTNAGC	3 cut(s)	402, 2292, 4179
Bsp68I	TCGCGA	1 cut(s)	1080
BspDI	ATCGAT	3 cut(s)	1241, 3305, 5352
BspFNI	CGCG	1 cut(s)	1080
BspHI	TCATGA	4 cut(s)	1960, 1996, 2047, 5038
BspLI	GGNNCC	7 cut(s)	494, 1651, 2522, 3477, 4377, 5014, 5155
BspMAI	CTGCAG	2 cut(s)	3946, 5188
BspMI	ACCTGC	1 cut(s)	4911
BspQI	GCTCTTC	5 cut(s)	480, 834, 908, 1653, 3232
BspT107I	GGYRCC	2 cut(s)	492, 5153
BspTNI	GGTCTC	1 cut(s)	1336
BsrBI	CCGCTC	1 cut(s)	490
BsrDI	GCAATG	7 cut(s)	49, 280, 960, 997, 2470, 3175, 3286
BsrFI	RCCGGY	2 cut(s)	4471, 5150
BssAI	RCCGGY	2 cut(s)	4471, 5150
BssNI	GRCGYC	1 cut(s)	2174
BssSI	CACGAG	1 cut(s)	594
BssT1I	CCWWGG	4 cut(s)	1653, 3470, 3622, 3643
Bst2BI	CACGAG	1 cut(s)	594
Bst4CI	ACNGT	9 cut(s)	35, 215, 882, 2110, 2460, 2497, 2710, 3747, 5338
BstACI	GRCGYC	1 cut(s)	2174
BstAPI	GCANNNNNTGC	2 cut(s)	4139, 4973
BstBAI	YACGTR	1 cut(s)	4970
BstC8I	GCNNGC	9 cut(s)	1065, 1082, 1537, 2326, 2876, 4511, 4828, 5282, 5555
BstDSI	CCRYGG	1 cut(s)	3504
BstEII	GGTNACC	1 cut(s)	5227
BstFNI	CGCG	1 cut(s)	1080
BstH2I	RGCGCY	2 cut(s)	1911, 4580
BstHHI	GCGC	4 cut(s)	1775, 1910, 2947, 4579
BstNSI	RCATGY	4 cut(s)	1493, 2132, 3010, 3199
BstPI	GGTNACC	1 cut(s)	5227
BstSFI	CTRYAG	4 cut(s)	2154, 3942, 5184, 5581
BstSLI	GKGCMC	1 cut(s)	497
BstUI	CGCG	1 cut(s)	1080
BstV2I	GAAGAC	2 cut(s)	959, 2081
BstXI	CCANNNNNNTGG	2 cut(s)	1112, 1676
Bsu15I	ATCGAT	3 cut(s)	1241, 3305, 5352
Bsu36I	CCTNAGG	2 cut(s)	864, 2280
BsuI	GTATCC	3 cut(s)	1132, 2065, 2662
BsuTUI	ATCGAT	3 cut(s)	1241, 3305, 5352
BtgI	CCRYGG	1 cut(s)	3504
BtrI	CACGTC	2 cut(s)	4070, 5177
BtsI	GCAGTG	1 cut(s)	274
BtsIMutI	CAGTG	7 cut(s)	40, 274, 1772, 2465, 2694, 2715, 5023
BtuMI	TCGCGA	1 cut(s)	1080
BveI	ACCTGC	1 cut(s)	4911
Cac8I	GCNNGC	9 cut(s)	1065, 1082, 1537, 2326, 2876, 4511, 4828, 5282, 5555
CaiI	CAGNNNCTG	2 cut(s)	1729, 5407
CciI	TCATGA	4 cut(s)	1960, 1996, 2047, 5038
CfoI	GCGC	4 cut(s)	1775, 1910, 2947, 4579
Cfr10I	RCCGGY	2 cut(s)	4471, 5150
ClaI	ATCGAT	3 cut(s)	1241, 3305, 5352
CpoI	CGGWCCG	1 cut(s)	5257
CseI	GACGC	2 cut(s)	2182, 3671
CsiI	ACCWGGT	1 cut(s)	2701
Csp6I	GTAC	6 cut(s)	2706, 2803, 3437, 3500, 3852, 3991
CspAI	ACCGGT	1 cut(s)	4471
CspI	CGGWCCG	1 cut(s)	5257
CviQI	GTAC	6 cut(s)	2706, 2803, 3437, 3500, 3852, 3991
DraI	TTTAAA	1 cut(s)	5436
DraIII	CACNNNGTG	2 cut(s)	1279, 1754
DriI	GACNNNNNGTC	1 cut(s)	4073
EaeI	YGGCCR	1 cut(s)	2335
Eam1105I	GACNNNNNGTC	1 cut(s)	4073
Eco130I	CCWWGG	4 cut(s)	1653, 3470, 3622, 3643
Eco147I	AGGCCT	2 cut(s)	592, 3610
Eco31I	GGTCTC	1 cut(s)	1336
Eco32I	GATATC	1 cut(s)	4223
Eco47I	GGWCC	5 cut(s)	1468, 1477, 1545, 3333, 5257
Eco47III	AGCGCT	1 cut(s)	4578
Eco57I	CTGAAG	4 cut(s)	858, 866, 5313, 5475
Eco72I	CACGTG	1 cut(s)	4970
Eco81I	CCTNAGG	2 cut(s)	864, 2280
Eco88I	CYCGRG	3 cut(s)	603, 3898, 3958
Eco91I	GGTNACC	1 cut(s)	5227
EcoO109I	RGGNCCY	3 cut(s)	1477, 2918, 4774
EcoO65I	GGTNACC	1 cut(s)	5227
EcoRI	GAATTC	1 cut(s)	574
EcoRV	GATATC	1 cut(s)	4223
EcoT14I	CCWWGG	4 cut(s)	1653, 3470, 3622, 3643
EcoT22I	ATGCAT	2 cut(s)	4315, 5253
ErhI	CCWWGG	4 cut(s)	1653, 3470, 3622, 3643
Esp3I	CGTCTC	1 cut(s)	4368
FalI	AAGNNNNNCTT	8 cut(s)	1035, 1067, 3960, 3992, 4245, 4277, 4763, 4795
FaqI	GGGAC	4 cut(s)	44, 644, 1990, 4084
FauI	CCCGC	1 cut(s)	185
FauNDI	CATATG	2 cut(s)	4000, 5549
FbaI	TGATCA	2 cut(s)	199, 1866
FblI	GTMKAC	1 cut(s)	3216
FspI	TGCGCA	1 cut(s)	2946
GlaI	GCGC	4 cut(s)	1774, 1909, 2946, 4578
GsaI	CCCAGC	2 cut(s)	951, 1650
GsuI	CTGGAG	5 cut(s)	3116, 4007, 4535, 4839, 4899
HaeII	RGCGCY	2 cut(s)	1911, 4580
HapII	CCGG	6 cut(s)	239, 1471, 4104, 4472, 5151, 5255
HgaI	GACGC	2 cut(s)	2182, 3671
HhaI	GCGC	4 cut(s)	1775, 1910, 2947, 4579
Hin1I	GRCGYC	1 cut(s)	2174
Hin6I	GCGC	4 cut(s)	1773, 1908, 2945, 4577
HinP1I	GCGC	4 cut(s)	1773, 1908, 2945, 4577
HincII	GTYRAC	5 cut(s)	1378, 1714, 3052, 4926, 4951
HindII	GTYRAC	5 cut(s)	1378, 1714, 3052, 4926, 4951
HindIII	AAGCTT	3 cut(s)	2326, 2876, 3762
HpaI	GTTAAC	2 cut(s)	1378, 4951
HpaII	CCGG	6 cut(s)	239, 1471, 4104, 4472, 5151, 5255
Hpy99I	CGWCG	1 cut(s)	4458
HpyCH4III	ACNGT	9 cut(s)	35, 215, 882, 2110, 2460, 2497, 2710, 3747, 5338
HpyCH4IV	ACGT	3 cut(s)	4069, 4969, 5176
HpySE526I	ACGT	3 cut(s)	4069, 4969, 5176
Hsp92I	GRCGYC	1 cut(s)	2174
HspAI	GCGC	4 cut(s)	1773, 1908, 2945, 4577
Ksp22I	TGATCA	2 cut(s)	199, 1866
KspAI	GTTAAC	2 cut(s)	1378, 4951
LguI	GCTCTTC	5 cut(s)	480, 834, 908, 1653, 3232
MabI	ACCWGGT	1 cut(s)	2701
MaeII	ACGT	3 cut(s)	4069, 4969, 5176
MbiI	CCGCTC	1 cut(s)	490
MfeI	CAATTG	2 cut(s)	887, 2382
MhlI	GDGCHC	3 cut(s)	497, 4682, 5023
MlsI	TGGCCA	1 cut(s)	2337
MluNI	TGGCCA	1 cut(s)	2337
MlyI	GAGTC	4 cut(s)	3241, 4444, 4548, 5636
MmeI	TCCRAC	5 cut(s)	563, 2740, 3740, 4621, 4821
Mox20I	TGGCCA	1 cut(s)	2337
Mph1103I	ATGCAT	2 cut(s)	4315, 5253
MroXI	GAANNNNTTC	2 cut(s)	858, 1074
MscI	TGGCCA	1 cut(s)	2337
MslI	CAYNNNNRTG	4 cut(s)	1110, 1147, 2133, 2246
Msp20I	TGGCCA	1 cut(s)	2337
MspA1I	CMGCKG	4 cut(s)	562, 3890, 4837, 5453
MspI	CCGG	6 cut(s)	239, 1471, 4104, 4472, 5151, 5255
MunI	CAATTG	2 cut(s)	887, 2382
Mva1269I	GAATGC	5 cut(s)	2588, 2605, 4710, 5425, 5606
MvnI	CGCG	1 cut(s)	1080
NciI	CCSGG	1 cut(s)	4104
NdeI	CATATG	2 cut(s)	4000, 5549
NlaIV	GGNNCC	7 cut(s)	494, 1651, 2522, 3477, 4377, 5014, 5155
NmeAIII	GCCGAG	2 cut(s)	5624, 5646
NruI	TCGCGA	1 cut(s)	1080
NsbI	TGCGCA	1 cut(s)	2946
NsiI	ATGCAT	2 cut(s)	4315, 5253
NspI	RCATGY	4 cut(s)	1493, 2132, 3010, 3199
PagI	TCATGA	4 cut(s)	1960, 1996, 2047, 5038
PceI	AGGCCT	2 cut(s)	592, 3610
PciI	ACATGT	1 cut(s)	3195
PciSI	GCTCTTC	5 cut(s)	480, 834, 908, 1653, 3232
PctI	GAATGC	5 cut(s)	2588, 2605, 4710, 5425, 5606
PdmI	GAANNNNTTC	2 cut(s)	858, 1074
PflMI	CCANNNNNTGG	6 cut(s)	1542, 2989, 3080, 3471, 3722, 4817
PfoI	TCCNGGA	1 cut(s)	3079
PinAI	ACCGGT	1 cut(s)	4471
PleI	GAGTC	4 cut(s)	3241, 4444, 4547, 5636
PmaCI	CACGTG	1 cut(s)	4970
PmlI	CACGTG	1 cut(s)	4970
PpsI	GAGTC	4 cut(s)	3241, 4444, 4547, 5636
Ppu21I	YACGTR	1 cut(s)	4970
PpuMI	RGGWCCY	1 cut(s)	1477
PscI	ACATGT	1 cut(s)	3195
PshBI	ATTAAT	1 cut(s)	1245
PsiI	TTATAA	1 cut(s)	1229
Psp5II	RGGWCCY	1 cut(s)	1477
PspCI	CACGTG	1 cut(s)	4970
PspEI	GGTNACC	1 cut(s)	5227
PspFI	CCCAGC	2 cut(s)	947, 1646
PspN4I	GGNNCC	7 cut(s)	494, 1651, 2522, 3477, 4377, 5014, 5155
PspPPI	RGGWCCY	1 cut(s)	1477
PstI	CTGCAG	2 cut(s)	3946, 5188
PstNI	CAGNNNCTG	2 cut(s)	1729, 5407
PvuII	CAGCTG	3 cut(s)	562, 3890, 5453
RruI	TCGCGA	1 cut(s)	1080
RsaI	GTAC	6 cut(s)	2707, 2804, 3438, 3501, 3853, 3992
RsaNI	GTAC	6 cut(s)	2706, 2803, 3437, 3500, 3852, 3991
RseI	CAYNNNNRTG	4 cut(s)	1110, 1147, 2133, 2246
Rsr2I	CGGWCCG	1 cut(s)	5257
RsrII	CGGWCCG	1 cut(s)	5257
SapI	GCTCTTC	5 cut(s)	480, 834, 908, 1653, 3232
SchI	GAGTC	4 cut(s)	3241, 4444, 4548, 5636
SduI	GDGCHC	3 cut(s)	497, 4682, 5023
SexAI	ACCWGGT	1 cut(s)	2701
SfcI	CTRYAG	4 cut(s)	2154, 3942, 5184, 5581
SinI	GGWCC	5 cut(s)	1468, 1477, 1545, 3333, 5257
SmiMI	CAYNNNNRTG	4 cut(s)	1110, 1147, 2133, 2246
SmlI	CTYRAG	3 cut(s)	2207, 3249, 4525
SmoI	CTYRAG	3 cut(s)	2207, 3249, 4525
SpeI	ACTAGT	1 cut(s)	2426
SseBI	AGGCCT	2 cut(s)	592, 3610
SspI	AATATT	2 cut(s)	2867, 4756
StuI	AGGCCT	2 cut(s)	592, 3610
StyI	CCWWGG	4 cut(s)	1653, 3470, 3622, 3643
TaaI	ACNGT	9 cut(s)	35, 215, 882, 2110, 2460, 2497, 2710, 3747, 5338
TaiI	ACGT	3 cut(s)	4072, 4972, 5179
TatI	WGTACW	2 cut(s)	3436, 3990
TauI	GCSGC	3 cut(s)	17, 392, 4376
TscAI	CASTG	7 cut(s)	40, 274, 1772, 2465, 2694, 2715, 5023
TspGWI	ACGGA	7 cut(s)	1438, 2222, 2611, 2641, 4350, 4471, 5249
TspRI	CASTG	7 cut(s)	40, 274, 1772, 2465, 2694, 2715, 5023
Van91I	CCANNNNNTGG	6 cut(s)	1542, 2989, 3080, 3471, 3722, 4817
VpaK11BI	GGWCC	5 cut(s)	1468, 1477, 1545, 3333, 5257
VspI	ATTAAT	1 cut(s)	1245
XapI	RAATTY	9 cut(s)	121, 346, 574, 1197, 2390, 2749, 2822, 4760, 4960
XbaI	TCTAGA	1 cut(s)	1607
XceI	RCATGY	4 cut(s)	1493, 2132, 3010, 3199
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2497, 3719
XmaJI	CCTAGG	1 cut(s)	3643
XmiI	GTMKAC	1 cut(s)	3216
XmnI	GAANNNNTTC	2 cut(s)	858, 1074
Zsp2I	ATGCAT	2 cut(s)	4315, 5253

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.