Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0010310

Physical Location & Seq

Genomic Coordinates Reverse (-)

40394834 .. 40395628

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0288900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGAAGAAAAGAAGAGGGAAGAAAGGGGAAGGAACAAAGATAGAAGAAAAGAAGGGGGAAGAAAGGGAAGGAGAAGGGAGAGGTGTAGAGATTGGGTCTCTCAAGGGCTGCGACACGAGTTATTGGGAAGACAATGAGAAAGTGTTCAGCGAAGTTCGATTTGTTGTTCAAGGAGGGTTGTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

61

Amino Acids

6.87

Weight (kDa)

7.74

Isoelectric Point (pI)

35.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01040 AT1G01040
fragaria_vesca	FvH4_7g17920 FvH4_7g17920 FvH4_7g17920 FvH4_7g17920
malus_domestica	MD01G1091600.v1.1 MD07G1161800.v1.1
prunus_persica	Prupe.2G200900_v2.0.a1
pyrus_communis	pycom01g11560 pycom07g15740
rosa_chinensis	RchiOBHm_Chr1g0361361
rosa_laevigata	RLG00000027722
rosa_multiflora	Rmu_sc0002119.1_g000026
rosa_roxburghii	Rroxscaffold_4G00295020
rosa_rugosa	Rorug01G0288900
rosa_samantha	Rh1AG299700 Rh1BG263500 Rh1CG281100 Rh1DG293500
rosa_wichuraiana	Rw1G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AgsI	TTSAA	1 cut(s)	170
Alw26I	GTCTC	1 cut(s)	102
ApeKI	GCWGC	1 cut(s)	108
Asp700I	GAANNNNTTC	1 cut(s)	143
BauI	CACGAG	1 cut(s)	115
BbsI	GAAGAC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	95
BcoDI	GTCTC	1 cut(s)	102
BisI	GCNGC	1 cut(s)	109
BlsI	GCNGC	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	135
BpuEI	CTTGAG	1 cut(s)	86
BsaI	GGTCTC	1 cut(s)	102
BseXI	GCAGC	1 cut(s)	95
BsmAI	GTCTC	1 cut(s)	102
Bso31I	GGTCTC	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	102
BssSI	CACGAG	1 cut(s)	115
Bst2BI	CACGAG	1 cut(s)	115
Bst6I	CTCTTC	1 cut(s)	7
BstMAI	GTCTC	1 cut(s)	102
BstV1I	GCAGC	1 cut(s)	95
BstV2I	GAAGAC	1 cut(s)	135
CviJI	RGCY	1 cut(s)	108
CviKI_1	RGCY	1 cut(s)	108
Eam1104I	CTCTTC	1 cut(s)	7
EarI	CTCTTC	1 cut(s)	7
Eco31I	GGTCTC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	109
Fsp4HI	GCNGC	1 cut(s)	109
GluI	GCNGC	1 cut(s)	109
HpyAV	CCTTC	4 cut(s)	23, 46, 62, 68
Lsp1109I	GCAGC	1 cut(s)	95
MboII	GAAGA	6 cut(s)	16, 24, 31, 56, 71, 140
MnlI	CCTC	3 cut(s)	8, 74, 167
MroXI	GAANNNNTTC	1 cut(s)	143
PdmI	GAANNNNTTC	1 cut(s)	143
PkrI	GCNGC	1 cut(s)	110
SatI	GCNGC	1 cut(s)	109
SetI	ASST	1 cut(s)	85
SgeI	CNNG	4 cut(s)	115, 127, 129, 182
SmlI	CTYRAG	1 cut(s)	101
SmoI	CTYRAG	1 cut(s)	101
TaqI	TCGA	1 cut(s)	157
TseI	GCWGC	1 cut(s)	108
TspDTI	ATGAA	1 cut(s)	17
XmnI	GAANNNNTTC	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.