Belongs to the helicase family. Dicer subfamily
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01040 AT1G01040 |
| fragaria_vesca | FvH4_7g17920 FvH4_7g17920 FvH4_7g17920 FvH4_7g17920 |
| malus_domestica | MD01G1091600.v1.1 MD07G1161800.v1.1 |
| prunus_persica | Prupe.2G200900_v2.0.a1 |
| pyrus_communis | pycom01g11560 pycom07g15740 |
| rosa_chinensis | RchiOBHm_Chr1g0361361 |
| rosa_laevigata | RLG00000027722 |
| rosa_multiflora | Rmu_sc0002119.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00295020 |
| rosa_rugosa | Rorug01G0288900 |
| rosa_samantha | Rh1AG299700 Rh1BG263500 Rh1CG281100 Rh1DG293500 |
| rosa_wichuraiana | Rw1G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1289 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3413 |
| Acc36I | ACCTGC | 1 cut(s) | 5080 |
| AccB1I | GGYRCC | 2 cut(s) | 1001, 4193 |
| AccB7I | CCANNNNNTGG | 5 cut(s) | 146, 2953, 3044, 3686, 4985 |
| AccBSI | CCGCTC | 1 cut(s) | 261 |
| AccI | GTMKAC | 1 cut(s) | 4574 |
| AccII | CGCG | 4 cut(s) | 2199, 3638, 4038, 4072 |
| AccIII | TCCGGA | 2 cut(s) | 3116, 3731 |
| AcoI | YGGCCR | 3 cut(s) | 171, 2299, 2365 |
| AcsI | RAATTY | 7 cut(s) | 292, 915, 1220, 1257, 2354, 4921, 4928 |
| AcuI | CTGAAG | 5 cut(s) | 1149, 2648, 3310, 4128, 4481 |
| AcyI | GRCGYC | 1 cut(s) | 3362 |
| AdeI | CACNNNGTG | 1 cut(s) | 1339 |
| AflII | CTTAAG | 1 cut(s) | 2557 |
| AflIII | ACRYGT | 2 cut(s) | 3159, 3815 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 4040 |
| AhlI | ACTAGT | 1 cut(s) | 2390 |
| AjiI | CACGTC | 1 cut(s) | 3409 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 929, 961, 3927, 3959 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 393, 425 |
| Alw21I | GWGCWC | 4 cut(s) | 43, 957, 3571, 4918 |
| Alw26I | GTCTC | 9 cut(s) | 1396, 2083, 2576, 2864, 3609, 4048, 4071, 4195, 4319 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1240, 2155, 5008 |
| Ama87I | CYCGRG | 3 cut(s) | 2501, 4148, 4693 |
| Aor13HI | TCCGGA | 2 cut(s) | 3116, 3731 |
| ApoI | RAATTY | 7 cut(s) | 292, 915, 1220, 1257, 2354, 4921, 4928 |
| AseI | ATTAAT | 1 cut(s) | 1800 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 915, 1134, 2193, 3147 |
| AspLEI | GCGC | 4 cut(s) | 1728, 1810, 2201, 2545 |
| AsuC2I | CCSGG | 4 cut(s) | 2502, 2503, 3928, 4176 |
| AsuNHI | GCTAGC | 1 cut(s) | 1595 |
| AvaI | CYCGRG | 3 cut(s) | 2501, 4148, 4693 |
| AvaII | GGWCC | 6 cut(s) | 149, 287, 401, 1528, 1605, 2882 |
| AxyI | CCTNAGG | 1 cut(s) | 921 |
| BaeGI | GKGCMC | 1 cut(s) | 4198 |
| BalI | TGGCCA | 1 cut(s) | 173 |
| BamHI | GGATCC | 2 cut(s) | 3439, 3490 |
| BanI | GGYRCC | 2 cut(s) | 1001, 4193 |
| BanII | GRGCYC | 1 cut(s) | 3571 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 2043, 2075 |
| BauI | CACGAG | 2 cut(s) | 642, 4418 |
| BbsI | GAAGAC | 2 cut(s) | 2242, 3316 |
| Bbv12I | GWGCWC | 4 cut(s) | 43, 957, 3571, 4918 |
| BceAI | ACGGC | 4 cut(s) | 2352, 3117, 3924, 5012 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 4616, 4650 |
| BciVI | GTATCC | 2 cut(s) | 2650, 5002 |
| BclI | TGATCA | 2 cut(s) | 235, 826 |
| BcnI | CCSGG | 4 cut(s) | 2502, 2503, 3928, 4176 |
| BcoDI | GTCTC | 9 cut(s) | 1396, 2083, 2576, 2864, 3609, 4048, 4071, 4195, 4319 |
| BcuI | ACTAGT | 1 cut(s) | 2390 |
| BfmI | CTRYAG | 2 cut(s) | 2118, 4620 |
| BfrI | CTTAAG | 1 cut(s) | 2557 |
| BfuAI | ACCTGC | 1 cut(s) | 5080 |
| BfuI | GTATCC | 2 cut(s) | 2650, 5002 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2298 |
| BmcAI | AGTACT | 1 cut(s) | 2166 |
| Bme18I | GGWCC | 6 cut(s) | 149, 287, 401, 1528, 1605, 2882 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 4040 |
| BmeT110I | CYCGRG | 3 cut(s) | 2501, 4148, 4693 |
| BmgBI | CACGTC | 1 cut(s) | 3409 |
| BmrI | ACTGGG | 3 cut(s) | 39, 39, 1829 |
| BmtI | GCTAGC | 1 cut(s) | 1599 |
| BmuI | ACTGGG | 3 cut(s) | 39, 39, 1829 |
| BoxI | GACNNNNGTC | 3 cut(s) | 1326, 2619, 4498 |
| BpiI | GAAGAC | 2 cut(s) | 2242, 3316 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 527, 559, 3947, 3979 |
| BpmI | CTGGAG | 5 cut(s) | 123, 4688, 5007, 5030, 5068 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1925 |
| BpuEI | CTTGAG | 3 cut(s) | 2156, 2897, 3080 |
| BpuMI | CCSGG | 4 cut(s) | 2502, 2503, 3928, 4176 |
| Bsa29I | ATCGAT | 2 cut(s) | 3269, 5038 |
| BsaAI | YACGTR | 1 cut(s) | 5068 |
| BsaBI | GATNNNNATC | 4 cut(s) | 660, 687, 3033, 3513 |
| BsaHI | GRCGYC | 1 cut(s) | 3362 |
| BsaI | GGTCTC | 1 cut(s) | 1396 |
| BsaWI | WCCGGW | 3 cut(s) | 895, 3116, 3731 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 191, 221, 1414, 1444, 2103, 2133, 2832, 2862 |
| Bse118I | RCCGGY | 1 cut(s) | 361 |
| Bse21I | CCTNAGG | 1 cut(s) | 921 |
| Bse3DI | GCAATG | 5 cut(s) | 187, 324, 1017, 2434, 4169 |
| Bse8I | GATNNNNATC | 4 cut(s) | 660, 687, 3033, 3513 |
| BseAI | TCCGGA | 2 cut(s) | 3116, 3731 |
| BseCI | ATCGAT | 2 cut(s) | 3269, 5038 |
| BseJI | GATNNNNATC | 4 cut(s) | 660, 687, 3033, 3513 |
| BseMI | GCAATG | 5 cut(s) | 187, 324, 1017, 2434, 4169 |
| BseRI | GAGGAG | 9 cut(s) | 20, 65, 144, 212, 439, 505, 2594, 3711, 4622 |
| BseSI | GKGCMC | 1 cut(s) | 4198 |
| BseYI | CCCAGC | 2 cut(s) | 1706, 2756 |
| BsgI | GTGCAG | 3 cut(s) | 1598, 2168, 3558 |
| Bsh1236I | CGCG | 4 cut(s) | 2199, 3638, 4038, 4072 |
| BshNI | GGYRCC | 2 cut(s) | 1001, 4193 |
| BshVI | ATCGAT | 2 cut(s) | 3269, 5038 |
| BsiHKAI | GWGCWC | 4 cut(s) | 43, 957, 3571, 4918 |
| BsiHKCI | CYCGRG | 3 cut(s) | 2501, 4148, 4693 |
| BsiSI | CCGG | 9 cut(s) | 362, 896, 1005, 2419, 2502, 3117, 3732, 3928, 4176 |
| BsiWI | CGTACG | 1 cut(s) | 3602 |
| BsmAI | GTCTC | 9 cut(s) | 1396, 2083, 2576, 2864, 3609, 4048, 4071, 4195, 4319 |
| BsmI | GAATGC | 5 cut(s) | 310, 388, 580, 2552, 2569 |
| Bso31I | GGTCTC | 1 cut(s) | 1396 |
| BsoBI | CYCGRG | 3 cut(s) | 2501, 4148, 4693 |
| Bsp1286I | GDGCHC | 5 cut(s) | 43, 957, 3571, 4198, 4918 |
| Bsp13I | TCCGGA | 2 cut(s) | 3116, 3731 |
| Bsp68I | TCGCGA | 1 cut(s) | 3638 |
| BspDI | ATCGAT | 2 cut(s) | 3269, 5038 |
| BspEI | TCCGGA | 2 cut(s) | 3116, 3731 |
| BspFNI | CGCG | 4 cut(s) | 2199, 3638, 4038, 4072 |
| BspHI | TCATGA | 2 cut(s) | 1612, 4797 |
| BspMI | ACCTGC | 1 cut(s) | 5080 |
| BspOI | GCTAGC | 1 cut(s) | 1599 |
| BspQI | GCTCTTC | 2 cut(s) | 1713, 3196 |
| BspT107I | GGYRCC | 2 cut(s) | 1001, 4193 |
| BspTI | CTTAAG | 1 cut(s) | 2557 |
| BspTNI | GGTCTC | 1 cut(s) | 1396 |
| BsrBI | CCGCTC | 1 cut(s) | 261 |
| BsrDI | GCAATG | 5 cut(s) | 187, 324, 1017, 2434, 4169 |
| BsrFI | RCCGGY | 1 cut(s) | 361 |
| BssAI | RCCGGY | 1 cut(s) | 361 |
| BssNAI | GTATAC | 1 cut(s) | 4575 |
| BssNI | GRCGYC | 1 cut(s) | 3362 |
| BssSI | CACGAG | 2 cut(s) | 642, 4418 |
| BssT1I | CCWWGG | 5 cut(s) | 1713, 2244, 3434, 3586, 3943 |
| Bst1107I | GTATAC | 1 cut(s) | 4575 |
| Bst2BI | CACGAG | 2 cut(s) | 642, 4418 |
| Bst4CI | ACNGT | 8 cut(s) | 99, 251, 1532, 1573, 2379, 2461, 2674, 3711 |
| BstACI | GRCGYC | 1 cut(s) | 3362 |
| BstAFI | CTTAAG | 1 cut(s) | 2557 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 186 |
| BstBAI | YACGTR | 1 cut(s) | 5068 |
| BstC8I | GCNNGC | 9 cut(s) | 268, 1083, 1125, 1597, 2290, 2916, 2935, 4235, 4242 |
| BstDSI | CCRYGG | 1 cut(s) | 4189 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 2268 |
| BstFNI | CGCG | 4 cut(s) | 2199, 3638, 4038, 4072 |
| BstHHI | GCGC | 4 cut(s) | 1728, 1810, 2201, 2545 |
| BstMAI | GTCTC | 9 cut(s) | 1396, 2083, 2576, 2864, 3609, 4048, 4071, 4195, 4319 |
| BstNSI | RCATGY | 6 cut(s) | 1553, 2096, 2974, 3163, 3819, 4237 |
| BstPAI | GACNNNNGTC | 3 cut(s) | 1326, 2619, 4498 |
| BstSFI | CTRYAG | 2 cut(s) | 2118, 4620 |
| BstSLI | GKGCMC | 1 cut(s) | 4198 |
| BstUI | CGCG | 4 cut(s) | 2199, 3638, 4038, 4072 |
| BstV2I | GAAGAC | 2 cut(s) | 2242, 3316 |
| BstX2I | RGATCY | 8 cut(s) | 3034, 3108, 3199, 3280, 3439, 3490, 3514, 4290 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1172, 1736, 4536 |
| BstYI | RGATCY | 8 cut(s) | 3034, 3108, 3199, 3280, 3439, 3490, 3514, 4290 |
| BstZ17I | GTATAC | 1 cut(s) | 4575 |
| Bsu15I | ATCGAT | 2 cut(s) | 3269, 5038 |
| Bsu36I | CCTNAGG | 1 cut(s) | 921 |
| BsuI | GTATCC | 2 cut(s) | 2650, 5002 |
| BsuTUI | ATCGAT | 2 cut(s) | 3269, 5038 |
| BtgI | CCRYGG | 1 cut(s) | 4189 |
| BtrI | CACGTC | 1 cut(s) | 3409 |
| BtsI | GCAGTG | 2 cut(s) | 1054, 2429 |
| BtuMI | TCGCGA | 1 cut(s) | 3638 |
| BveI | ACCTGC | 1 cut(s) | 5080 |
| Cac8I | GCNNGC | 9 cut(s) | 268, 1083, 1125, 1597, 2290, 2916, 2935, 4235, 4242 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1240, 2155, 5008 |
| CciI | TCATGA | 2 cut(s) | 1612, 4797 |
| CfoI | GCGC | 4 cut(s) | 1728, 1810, 2201, 2545 |
| Cfr10I | RCCGGY | 1 cut(s) | 361 |
| Cfr9I | CCCGGG | 1 cut(s) | 2501 |
| ClaI | ATCGAT | 2 cut(s) | 3269, 5038 |
| CseI | GACGC | 3 cut(s) | 3351, 3635, 4044 |
| CsiI | ACCWGGT | 1 cut(s) | 2679 |
| DraI | TTTAAA | 2 cut(s) | 1443, 4927 |
| DraIII | CACNNNGTG | 1 cut(s) | 1339 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3413 |
| DriI | GACNNNNNGTC | 1 cut(s) | 4040 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3413 |
| EaeI | YGGCCR | 3 cut(s) | 171, 2299, 2365 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 4040 |
| Ecl136II | GAGCTC | 1 cut(s) | 3569 |
| Eco130I | CCWWGG | 5 cut(s) | 1713, 2244, 3434, 3586, 3943 |
| Eco147I | AGGCCT | 1 cut(s) | 640 |
| Eco24I | GRGCYC | 1 cut(s) | 3571 |
| Eco31I | GGTCTC | 1 cut(s) | 1396 |
| Eco32I | GATATC | 1 cut(s) | 2416 |
| Eco47I | GGWCC | 6 cut(s) | 149, 287, 401, 1528, 1605, 2882 |
| Eco53kI | GAGCTC | 1 cut(s) | 3569 |
| Eco57I | CTGAAG | 5 cut(s) | 1149, 2648, 3310, 4128, 4481 |
| Eco81I | CCTNAGG | 1 cut(s) | 921 |
| Eco88I | CYCGRG | 3 cut(s) | 2501, 4148, 4693 |
| EcoICRI | GAGCTC | 1 cut(s) | 3569 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 2268 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2882 |
| EcoRI | GAATTC | 2 cut(s) | 292, 1220 |
| EcoRV | GATATC | 1 cut(s) | 2416 |
| EcoT14I | CCWWGG | 5 cut(s) | 1713, 2244, 3434, 3586, 3943 |
| EcoT22I | ATGCAT | 1 cut(s) | 4483 |
| EcoT38I | GRGCYC | 1 cut(s) | 3571 |
| ErhI | CCWWGG | 5 cut(s) | 1713, 2244, 3434, 3586, 3943 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 1095, 1127, 3927, 3959, 4101, 4133 |
| FauI | CCCGC | 1 cut(s) | 2078 |
| FauNDI | CATATG | 1 cut(s) | 3967 |
| FbaI | TGATCA | 2 cut(s) | 235, 826 |
| FblI | GTMKAC | 1 cut(s) | 4574 |
| FriOI | GRGCYC | 1 cut(s) | 3571 |
| GlaI | GCGC | 4 cut(s) | 1727, 1809, 2200, 2544 |
| GsaI | CCCAGC | 2 cut(s) | 1710, 2760 |
| GsuI | CTGGAG | 5 cut(s) | 123, 4688, 5007, 5030, 5068 |
| HapII | CCGG | 9 cut(s) | 362, 896, 1005, 2419, 2502, 3117, 3732, 3928, 4176 |
| HgaI | GACGC | 3 cut(s) | 3351, 3635, 4044 |
| HhaI | GCGC | 4 cut(s) | 1728, 1810, 2201, 2545 |
| Hin1I | GRCGYC | 1 cut(s) | 3362 |
| Hin6I | GCGC | 4 cut(s) | 1726, 1808, 2199, 2543 |
| HinP1I | GCGC | 4 cut(s) | 1726, 1808, 2199, 2543 |
| HincII | GTYRAC | 5 cut(s) | 1774, 2691, 3016, 4894, 5095 |
| HindII | GTYRAC | 5 cut(s) | 1774, 2691, 3016, 4894, 5095 |
| HindIII | AAGCTT | 1 cut(s) | 3726 |
| HpaI | GTTAAC | 1 cut(s) | 1774 |
| HpaII | CCGG | 9 cut(s) | 362, 896, 1005, 2419, 2502, 3117, 3732, 3928, 4176 |
| HpyCH4III | ACNGT | 8 cut(s) | 99, 251, 1532, 1573, 2379, 2461, 2674, 3711 |
| HpyCH4IV | ACGT | 3 cut(s) | 3408, 4127, 5067 |
| HpySE526I | ACGT | 3 cut(s) | 3408, 4127, 5067 |
| Hsp92I | GRCGYC | 1 cut(s) | 3362 |
| HspAI | GCGC | 4 cut(s) | 1726, 1808, 2199, 2543 |
| KflI | GGGWCCC | 1 cut(s) | 2882 |
| Kpn2I | TCCGGA | 2 cut(s) | 3116, 3731 |
| Ksp22I | TGATCA | 2 cut(s) | 235, 826 |
| KspAI | GTTAAC | 1 cut(s) | 1774 |
| LguI | GCTCTTC | 2 cut(s) | 1713, 3196 |
| MabI | ACCWGGT | 1 cut(s) | 2679 |
| MaeII | ACGT | 3 cut(s) | 3408, 4127, 5067 |
| MaeIII | GTNAC | 9 cut(s) | 2134, 2151, 2371, 2819, 2855, 3134, 3850, 4554, 4688 |
| MbiI | CCGCTC | 1 cut(s) | 261 |
| MfeI | CAATTG | 1 cut(s) | 944 |
| MflI | RGATCY | 8 cut(s) | 3034, 3108, 3199, 3280, 3439, 3490, 3514, 4290 |
| MhlI | GDGCHC | 5 cut(s) | 43, 957, 3571, 4198, 4918 |
| MlsI | TGGCCA | 1 cut(s) | 173 |
| MluNI | TGGCCA | 1 cut(s) | 173 |
| MlyI | GAGTC | 8 cut(s) | 386, 2131, 2629, 2696, 2721, 3131, 4685, 4716 |
| MmeI | TCCRAC | 3 cut(s) | 379, 2704, 3704 |
| Mox20I | TGGCCA | 1 cut(s) | 173 |
| Mph1103I | ATGCAT | 1 cut(s) | 4483 |
| MroI | TCCGGA | 2 cut(s) | 3116, 3731 |
| MroXI | GAANNNNTTC | 4 cut(s) | 915, 1134, 2193, 3147 |
| MscI | TGGCCA | 1 cut(s) | 173 |
| MslI | CAYNNNNRTG | 5 cut(s) | 1022, 1170, 2097, 2519, 4534 |
| Msp20I | TGGCCA | 1 cut(s) | 173 |
| MspA1I | CMGCKG | 2 cut(s) | 3857, 5005 |
| MspCI | CTTAAG | 1 cut(s) | 2557 |
| MspI | CCGG | 9 cut(s) | 362, 896, 1005, 2419, 2502, 3117, 3732, 3928, 4176 |
| MunI | CAATTG | 1 cut(s) | 944 |
| Mva1269I | GAATGC | 5 cut(s) | 310, 388, 580, 2552, 2569 |
| MvnI | CGCG | 4 cut(s) | 2199, 3638, 4038, 4072 |
| NciI | CCSGG | 4 cut(s) | 2502, 2503, 3928, 4176 |
| NdeI | CATATG | 1 cut(s) | 3967 |
| NheI | GCTAGC | 1 cut(s) | 1595 |
| NmeAIII | GCCGAG | 2 cut(s) | 2425, 3550 |
| NmuCI | GTSAC | 7 cut(s) | 2134, 2151, 2371, 2819, 3134, 3850, 4688 |
| NruI | TCGCGA | 1 cut(s) | 3638 |
| NsiI | ATGCAT | 1 cut(s) | 4483 |
| NspI | RCATGY | 6 cut(s) | 1553, 2096, 2974, 3163, 3819, 4237 |
| PaeI | GCATGC | 1 cut(s) | 4237 |
| PaeR7I | CTCGAG | 1 cut(s) | 4693 |
| PagI | TCATGA | 2 cut(s) | 1612, 4797 |
| PceI | AGGCCT | 1 cut(s) | 640 |
| PciI | ACATGT | 2 cut(s) | 3159, 3815 |
| PciSI | GCTCTTC | 2 cut(s) | 1713, 3196 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 287 |
| PctI | GAATGC | 5 cut(s) | 310, 388, 580, 2552, 2569 |
| PdmI | GAANNNNTTC | 4 cut(s) | 915, 1134, 2193, 3147 |
| Pfl23II | CGTACG | 1 cut(s) | 3602 |
| PflMI | CCANNNNNTGG | 5 cut(s) | 146, 2953, 3044, 3686, 4985 |
| PfoI | TCCNGGA | 2 cut(s) | 3043, 4293 |
| PleI | GAGTC | 8 cut(s) | 386, 2131, 2628, 2695, 2721, 3131, 4685, 4715 |
| PpsI | GAGTC | 8 cut(s) | 386, 2131, 2628, 2695, 2721, 3131, 4685, 4715 |
| Ppu21I | YACGTR | 1 cut(s) | 5068 |
| PpuMI | RGGWCCY | 1 cut(s) | 2882 |
| PscI | ACATGT | 2 cut(s) | 3159, 3815 |
| PshAI | GACNNNNGTC | 3 cut(s) | 1326, 2619, 4498 |
| PshBI | ATTAAT | 1 cut(s) | 1800 |
| PsiI | TTATAA | 1 cut(s) | 1289 |
| Psp124BI | GAGCTC | 1 cut(s) | 3571 |
| Psp5II | RGGWCCY | 1 cut(s) | 2882 |
| PspFI | CCCAGC | 2 cut(s) | 1706, 2756 |
| PspLI | CGTACG | 1 cut(s) | 3602 |
| PspPPI | RGGWCCY | 1 cut(s) | 2882 |
| PspXI | VCTCGAGB | 1 cut(s) | 4693 |
| PsrI | GAACNNNNNNTAC | 4 cut(s) | 1080, 1112, 3289, 3321 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1240, 2155, 5008 |
| PsuI | RGATCY | 8 cut(s) | 3034, 3108, 3199, 3280, 3439, 3490, 3514, 4290 |
| PvuII | CAGCTG | 1 cut(s) | 3857 |
| RruI | TCGCGA | 1 cut(s) | 3638 |
| RseI | CAYNNNNRTG | 5 cut(s) | 1022, 1170, 2097, 2519, 4534 |
| SacI | GAGCTC | 1 cut(s) | 3571 |
| SapI | GCTCTTC | 2 cut(s) | 1713, 3196 |
| ScaI | AGTACT | 1 cut(s) | 2166 |
| SchI | GAGTC | 8 cut(s) | 386, 2131, 2629, 2696, 2721, 3131, 4685, 4716 |
| SduI | GDGCHC | 5 cut(s) | 43, 957, 3571, 4198, 4918 |
| SexAI | ACCWGGT | 1 cut(s) | 2679 |
| SfcI | CTRYAG | 2 cut(s) | 2118, 4620 |
| Sfr274I | CTCGAG | 1 cut(s) | 4693 |
| SgrAI | CRCCGGYG | 1 cut(s) | 361 |
| SinI | GGWCC | 6 cut(s) | 149, 287, 401, 1528, 1605, 2882 |
| SlaI | CTCGAG | 1 cut(s) | 4693 |
| SmaI | CCCGGG | 1 cut(s) | 2503 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 1022, 1170, 2097, 2519, 4534 |
| SmlI | CTYRAG | 5 cut(s) | 2171, 2557, 2876, 3095, 4693 |
| SmoI | CTYRAG | 5 cut(s) | 2171, 2557, 2876, 3095, 4693 |
| SpeI | ACTAGT | 1 cut(s) | 2390 |
| SphI | GCATGC | 1 cut(s) | 4237 |
| SseBI | AGGCCT | 1 cut(s) | 640 |
| SspI | AATATT | 2 cut(s) | 2831, 3091 |
| SstI | GAGCTC | 1 cut(s) | 3571 |
| StuI | AGGCCT | 1 cut(s) | 640 |
| StyI | CCWWGG | 5 cut(s) | 1713, 2244, 3434, 3586, 3943 |
| TaaI | ACNGT | 8 cut(s) | 99, 251, 1532, 1573, 2379, 2461, 2674, 3711 |
| TaiI | ACGT | 3 cut(s) | 3411, 4130, 5070 |
| TatI | WGTACW | 5 cut(s) | 2164, 3400, 3957, 4162, 4879 |
| TauI | GCSGC | 4 cut(s) | 167, 361, 4313, 5008 |
| TseFI | GTSAC | 7 cut(s) | 2134, 2151, 2371, 2819, 3134, 3850, 4688 |
| Tsp45I | GTSAC | 7 cut(s) | 2134, 2151, 2371, 2819, 3134, 3850, 4688 |
| TspGWI | ACGGA | 4 cut(s) | 582, 683, 2605, 4100 |
| TspMI | CCCGGG | 1 cut(s) | 2501 |
| Van91I | CCANNNNNTGG | 5 cut(s) | 146, 2953, 3044, 3686, 4985 |
| Vha464I | CTTAAG | 1 cut(s) | 2557 |
| VpaK11BI | GGWCC | 6 cut(s) | 149, 287, 401, 1528, 1605, 2882 |
| VspI | ATTAAT | 1 cut(s) | 1800 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 2268 |
| XapI | RAATTY | 7 cut(s) | 292, 915, 1220, 1257, 2354, 4921, 4928 |
| XbaI | TCTAGA | 1 cut(s) | 1667 |
| XceI | RCATGY | 6 cut(s) | 1553, 2096, 2974, 3163, 3819, 4237 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 200, 3026, 3683 |
| XhoI | CTCGAG | 1 cut(s) | 4693 |
| XmaI | CCCGGG | 1 cut(s) | 2501 |
| XmiI | GTMKAC | 1 cut(s) | 4574 |
| XmnI | GAANNNNTTC | 4 cut(s) | 915, 1134, 2193, 3147 |
| ZrmI | AGTACT | 1 cut(s) | 2166 |
| Zsp2I | ATGCAT | 1 cut(s) | 4483 |