Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010310

Physical Location & Seq

Genomic Coordinates Reverse (-)

23707255 .. 23707951

Gene Structure 697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1161800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTTTTGGACAAAAATCCCATCCAACCTATGGTATCAGAGGAGCCGTGGCACAGTTTGATGTTGTTAAAGCTTCTGGATTGATTCCTGATCGGAATGCCCTAAAAATTAGAAAGCTGGTGGATTTTCCCAAAGACAAGTTATTTATGGCAGATACTACATGTGTCAGTGTAAAAGGCTTGGTCGGGAAGATTGTGACAGCTGCTCACTCAGGGAAGAGGTTTTATGTGGATTCAATATGCTATGATATGACGGCAGAAAACTCTTTCCCCCGGAAAGAAGGCTACCTTGGCCCTGTGGAGTACAGCTCATATGCTGATTATTACAAGCAAAAGGGAAAGCTAGGTGGTGCTGGGTTCCTGAGTAGCATTTTGTTTTTAGAATTGTTAGAAAGTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0004521 GO:0004525 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016246 GO:0016441 GO:0016442 GO:0016458 GO:0016787 GO:0016788 GO:0016891 GO:0016893 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031332 GO:0032296 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0048519 GO:0048856 GO:0050789 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0090305 GO:0090501 GO:0090502 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1901698 GO:1901699 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko05206 map05206

Pfam Domains

Protein Families

DEAD DND1_DSRM Dicer_dimer Helicase_C PAZ ResIII Ribonuclease_3 dsrm

Protein Analysis

134

Amino Acids

14.63

Weight (kDa)

9.02

Isoelectric Point (pI)

15.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PAZ	PF02170	59 - 112	2.4e-08	PAZ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010310)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01040 AT1G01040
fragaria_vesca	FvH4_7g17920 FvH4_7g17920 FvH4_7g17920 FvH4_7g17920
malus_domestica	MD01G1091600.v1.1 MD07G1161800.v1.1
prunus_persica	Prupe.2G200900_v2.0.a1
pyrus_communis	pycom01g11560 pycom07g15740
rosa_chinensis	RchiOBHm_Chr1g0361361
rosa_laevigata	RLG00000027722
rosa_multiflora	Rmu_sc0002119.1_g000026
rosa_roxburghii	Rroxscaffold_4G00295020
rosa_rugosa	Rorug01G0288900
rosa_samantha	Rh1AG299700 Rh1BG263500 Rh1CG281100 Rh1DG293500
rosa_wichuraiana	Rw1G026540

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	32
AfaI	GTAC	1 cut(s)	305
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflIII	ACRYGT	1 cut(s)	161
AgsI	TTSAA	1 cut(s)	237
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	5 cut(s)	74, 118, 203, 309, 343
AluI	AGCT	5 cut(s)	74, 118, 203, 309, 343
AoxI	GGCC	1 cut(s)	292
ApeKI	GCWGC	1 cut(s)	203
AspS9I	GGNCC	1 cut(s)	293
AsuC2I	CCSGG	1 cut(s)	274
BbvI	GCAGC	1 cut(s)	190
BccI	CCATC	1 cut(s)	30
BceAI	ACGGC	2 cut(s)	32, 270
BcnI	CCSGG	1 cut(s)	274
BfaI	CTAG	1 cut(s)	344
BisI	GCNGC	1 cut(s)	204
BlsI	GCNGC	1 cut(s)	205
Bme1390I	CCNGG	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	293
BmiI	GGNNCC	2 cut(s)	46, 359
BmrFI	CCNGG	1 cut(s)	274
BplI	GAGNNNNNCTC	2 cut(s)	293, 325
BpuMI	CCSGG	1 cut(s)	274
BsaJI	CCNNGG	3 cut(s)	48, 272, 289
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
BseDI	CCNNGG	3 cut(s)	48, 272, 289
BseGI	GGATG	1 cut(s)	22
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseMII	CTCAG	2 cut(s)	225, 353
BseRI	GAGGAG	1 cut(s)	57
BseXI	GCAGC	1 cut(s)	190
BseYI	CCCAGC	1 cut(s)	353
BshFI	GGCC	1 cut(s)	294
BsiSI	CCGG	1 cut(s)	274
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmI	GAATGC	1 cut(s)	103
BsnI	GGCC	1 cut(s)	294
Bsp143I	GATC	1 cut(s)	91
BspANI	GGCC	1 cut(s)	294
BspCNI	CTCAG	2 cut(s)	224, 354
BspLI	GGNNCC	2 cut(s)	46, 359
BssECI	CCNNGG	3 cut(s)	48, 272, 289
BssMI	GATC	1 cut(s)	91
BssT1I	CCWWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	57
Bst6I	CTCTTC	1 cut(s)	212
BstDEI	CTNAG	2 cut(s)	211, 362
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	1 cut(s)	22
BstKTI	GATC	1 cut(s)	94
BstMBI	GATC	1 cut(s)	91
BstMWI	GCNNNNNNNGC	1 cut(s)	291
BstNSI	RCATGY	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	190
BsuRI	GGCC	1 cut(s)	294
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	304
CviAII	CATG	1 cut(s)	162
CviQI	GTAC	1 cut(s)	304
DdeI	CTNAG	2 cut(s)	211, 362
DpnI	GATC	1 cut(s)	93
DpnII	GATC	1 cut(s)	91
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
Eco130I	CCWWGG	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	289
ErhI	CCWWGG	1 cut(s)	289
FaeI	CATG	1 cut(s)	165
FaiI	YATR	9 cut(s)	33, 149, 163, 228, 241, 246, 251, 313, 315
FalI	AAGNNNNNCTT	2 cut(s)	273, 305
FatI	CATG	1 cut(s)	161
FauNDI	CATATG	1 cut(s)	313
Fnu4HI	GCNGC	1 cut(s)	204
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	1 cut(s)	204
FspBI	CTAG	1 cut(s)	344
GluI	GCNGC	1 cut(s)	204
GsaI	CCCAGC	1 cut(s)	357
HaeIII	GGCC	1 cut(s)	294
HapII	CCGG	1 cut(s)	274
Hin1II	CATG	1 cut(s)	165
HindIII	AAGCTT	1 cut(s)	72
HinfI	GANTC	2 cut(s)	85, 233
HpaII	CCGG	1 cut(s)	274
Hpy188I	TCNGA	2 cut(s)	41, 96
Hpy188III	TCNNGA	4 cut(s)	78, 89, 187, 361
HpyAV	CCTTC	1 cut(s)	275
HpyCH4III	ACNGT	1 cut(s)	57
HpyF10VI	GCNNNNNNNGC	1 cut(s)	291
HpyF3I	CTNAG	2 cut(s)	211, 362
Hsp92II	CATG	1 cut(s)	165
Kzo9I	GATC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	44
LpnPI	CCDG	8 cut(s)	63, 102, 104, 198, 287, 309, 339, 374
Lsp1109I	GCAGC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	344
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	1 cut(s)	93
MboI	GATC	1 cut(s)	91
MboII	GAAGA	2 cut(s)	202, 229
MluCI	AATT	2 cut(s)	108, 383
MmeI	TCCRAC	1 cut(s)	50
MnlI	CCTC	2 cut(s)	35, 213
MseI	TTAA	1 cut(s)	69
MspA1I	CMGCKG	1 cut(s)	203
MspI	CCGG	1 cut(s)	274
MspR9I	CCNGG	1 cut(s)	274
Mva1269I	GAATGC	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	291
NciI	CCSGG	1 cut(s)	274
NdeI	CATATG	1 cut(s)	313
NdeII	GATC	1 cut(s)	91
NlaIII	CATG	1 cut(s)	165
NlaIV	GGNNCC	2 cut(s)	46, 359
NmuCI	GTSAC	1 cut(s)	196
NspI	RCATGY	1 cut(s)	165
PciI	ACATGT	1 cut(s)	161
PctI	GAATGC	1 cut(s)	103
PfeI	GAWTC	2 cut(s)	85, 233
PflMI	CCANNNNNTGG	1 cut(s)	32
PkrI	GCNGC	1 cut(s)	205
PscI	ACATGT	1 cut(s)	161
PspFI	CCCAGC	1 cut(s)	353
PspN4I	GGNNCC	2 cut(s)	46, 359
PspPI	GGNCC	1 cut(s)	293
PvuII	CAGCTG	1 cut(s)	203
RsaI	GTAC	1 cut(s)	305
RsaNI	GTAC	1 cut(s)	304
SaqAI	TTAA	1 cut(s)	69
SatI	GCNGC	1 cut(s)	204
Sau3AI	GATC	1 cut(s)	91
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	274
SetI	ASST	9 cut(s)	32, 76, 120, 205, 224, 291, 311, 345, 349
Sse9I	AATT	2 cut(s)	108, 383
SspMI	CTAG	1 cut(s)	344
StyD4I	CCNGG	1 cut(s)	272
StyI	CCWWGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	57
TasI	AATT	2 cut(s)	108, 383
TatI	WGTACW	1 cut(s)	303
TfiI	GAWTC	2 cut(s)	85, 233
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	203
Tsp45I	GTSAC	1 cut(s)	196
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	32
XceI	RCATGY	1 cut(s)	165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	29
XspI	CTAG	1 cut(s)	344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.