Belongs to the helicase family. Dicer subfamily
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G01040 AT1G01040 |
| fragaria_vesca | FvH4_7g17920 FvH4_7g17920 FvH4_7g17920 FvH4_7g17920 |
| malus_domestica | MD01G1091600.v1.1 MD07G1161800.v1.1 |
| prunus_persica | Prupe.2G200900_v2.0.a1 |
| pyrus_communis | pycom01g11560 pycom07g15740 |
| rosa_chinensis | RchiOBHm_Chr1g0361361 |
| rosa_laevigata | RLG00000027722 |
| rosa_multiflora | Rmu_sc0002119.1_g000026 |
| rosa_roxburghii | Rroxscaffold_4G00295020 |
| rosa_rugosa | Rorug01G0288900 |
| rosa_samantha | Rh1AG299700 Rh1BG263500 Rh1CG281100 Rh1DG293500 |
| rosa_wichuraiana | Rw1G026540 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 726 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 3416 |
| Acc36I | ACCTGC | 1 cut(s) | 3004 |
| AccB7I | CCANNNNNTGG | 3 cut(s) | 146, 2956, 3438 |
| AccII | CGCG | 1 cut(s) | 2202 |
| AciI | CCGC | 5 cut(s) | 167, 170, 1534, 2657, 3033 |
| AclWI | GGATC | 5 cut(s) | 281, 2030, 3119, 3197, 3291 |
| AcoI | YGGCCR | 3 cut(s) | 171, 2302, 2368 |
| AcsI | RAATTY | 5 cut(s) | 427, 1223, 1260, 2357, 2716 |
| AcuI | CTGAAG | 1 cut(s) | 2651 |
| AcyI | GRCGYC | 1 cut(s) | 1203 |
| AdeI | CACNNNGTG | 1 cut(s) | 1342 |
| AfaI | GTAC | 6 cut(s) | 71, 1522, 2169, 2681, 2771, 3405 |
| AflII | CTTAAG | 1 cut(s) | 2560 |
| AflIII | ACRYGT | 1 cut(s) | 3162 |
| AhlI | ACTAGT | 1 cut(s) | 2393 |
| AjiI | CACGTC | 1 cut(s) | 3412 |
| AjnI | CCWGG | 6 cut(s) | 192, 274, 2483, 2570, 2682, 3046 |
| Alw21I | GWGCWC | 2 cut(s) | 43, 960 |
| Alw26I | GTCTC | 2 cut(s) | 2579, 2666 |
| AlwI | GGATC | 5 cut(s) | 281, 2030, 3119, 3197, 3291 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1243, 2158 |
| Ama87I | CYCGRG | 2 cut(s) | 923, 2504 |
| ApoI | RAATTY | 5 cut(s) | 427, 1223, 1260, 2357, 2716 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 393, 425, 2138, 2170, 2403, 2435, 3205, 3237 |
| AseI | ATTAAT | 3 cut(s) | 1803, 3149, 3392 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 1137, 3150 |
| AspLEI | GCGC | 3 cut(s) | 1731, 1813, 2204 |
| AspS9I | GGNCC | 9 cut(s) | 63, 149, 1005, 1165, 1186, 1531, 1608, 2885, 3442 |
| AsuC2I | CCSGG | 2 cut(s) | 2505, 2506 |
| AsuHPI | GGTGA | 9 cut(s) | 125, 449, 542, 1190, 1829, 1900, 2149, 2725, 2812 |
| AsuNHI | GCTAGC | 2 cut(s) | 1598, 2291 |
| AvaI | CYCGRG | 2 cut(s) | 923, 2504 |
| AvaII | GGWCC | 5 cut(s) | 149, 1531, 1608, 2885, 3442 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2061, 2094 |
| BalI | TGGCCA | 1 cut(s) | 2304 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2046, 2078, 2154, 2186 |
| BauI | CACGAG | 1 cut(s) | 642 |
| Bbv12I | GWGCWC | 2 cut(s) | 43, 960 |
| BceAI | ACGGC | 3 cut(s) | 1393, 2355, 2930 |
| BciT130I | CCWGG | 6 cut(s) | 194, 276, 2485, 2572, 2684, 3048 |
| BciVI | GTATCC | 1 cut(s) | 2653 |
| BclI | TGATCA | 2 cut(s) | 235, 829 |
| BcnI | CCSGG | 2 cut(s) | 2505, 2506 |
| BcoDI | GTCTC | 2 cut(s) | 2579, 2666 |
| BcuI | ACTAGT | 1 cut(s) | 2393 |
| BfmI | CTRYAG | 3 cut(s) | 187, 2121, 3309 |
| BfrI | CTTAAG | 1 cut(s) | 2560 |
| BfuAI | ACCTGC | 1 cut(s) | 3004 |
| BfuI | GTATCC | 1 cut(s) | 2653 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 2301 |
| Bme1390I | CCNGG | 8 cut(s) | 194, 276, 2485, 2505, 2506, 2572, 2684, 3048 |
| Bme18I | GGWCC | 5 cut(s) | 149, 1531, 1608, 2885, 3442 |
| BmeT110I | CYCGRG | 2 cut(s) | 923, 2504 |
| BmgBI | CACGTC | 1 cut(s) | 3412 |
| BmgT120I | GGNCC | 9 cut(s) | 63, 149, 1005, 1165, 1186, 1531, 1608, 2885, 3442 |
| BmiI | GGNNCC | 6 cut(s) | 790, 1006, 1610, 1699, 2886, 3443 |
| BmrFI | CCNGG | 8 cut(s) | 194, 276, 2485, 2505, 2506, 2572, 2684, 3048 |
| BmrI | ACTGGG | 4 cut(s) | 39, 39, 1011, 1832 |
| BmsI | GCATC | 8 cut(s) | 70, 1071, 1225, 1296, 1696, 3247, 3304, 3326 |
| BmtI | GCTAGC | 2 cut(s) | 1602, 2295 |
| BmuI | ACTGGG | 4 cut(s) | 39, 39, 1011, 1832 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2622 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 255, 287 |
| BpmI | CTGGAG | 1 cut(s) | 123 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1716, 1928 |
| BpuEI | CTTGAG | 4 cut(s) | 2159, 2900, 3083, 3201 |
| BpuMI | CCSGG | 2 cut(s) | 2505, 2506 |
| Bsa29I | ATCGAT | 2 cut(s) | 3272, 3496 |
| BsaBI | GATNNNNATC | 1 cut(s) | 687 |
| BsaHI | GRCGYC | 1 cut(s) | 1203 |
| BsaJI | CCNNGG | 7 cut(s) | 274, 924, 2247, 2403, 2484, 2504, 3437 |
| BsaWI | WCCGGW | 1 cut(s) | 590 |
| BsaXI | ACNNNNNCTCC | 8 cut(s) | 191, 221, 1417, 1447, 2106, 2136, 2835, 2865 |
| Bse3DI | GCAATG | 7 cut(s) | 187, 331, 505, 883, 1020, 1057, 2437 |
| Bse8I | GATNNNNATC | 1 cut(s) | 687 |
| BseBI | CCWGG | 6 cut(s) | 194, 276, 2485, 2572, 2684, 3048 |
| BseCI | ATCGAT | 2 cut(s) | 3272, 3496 |
| BseDI | CCNNGG | 7 cut(s) | 274, 924, 2247, 2403, 2484, 2504, 3437 |
| BseJI | GATNNNNATC | 1 cut(s) | 687 |
| BseMI | GCAATG | 7 cut(s) | 187, 331, 505, 883, 1020, 1057, 2437 |
| BseMII | CTCAG | 7 cut(s) | 642, 1268, 1365, 1919, 2612, 2765, 2778 |
| BseRI | GAGGAG | 7 cut(s) | 20, 144, 212, 548, 715, 1022, 2597 |
| BseYI | CCCAGC | 2 cut(s) | 1709, 2759 |
| BsgI | GTGCAG | 3 cut(s) | 392, 1601, 2171 |
| Bsh1236I | CGCG | 1 cut(s) | 2202 |
| BshVI | ATCGAT | 2 cut(s) | 3272, 3496 |
| BsiHKAI | GWGCWC | 2 cut(s) | 43, 960 |
| BsiHKCI | CYCGRG | 2 cut(s) | 923, 2504 |
| BsiSI | CCGG | 3 cut(s) | 591, 1008, 2505 |
| BslFI | GGGAC | 7 cut(s) | 38, 629, 1214, 1594, 3352, 3452, 3455 |
| BsmAI | GTCTC | 2 cut(s) | 2579, 2666 |
| BsmFI | GGGAC | 7 cut(s) | 38, 629, 1214, 1594, 3352, 3452, 3455 |
| BsmI | GAATGC | 4 cut(s) | 310, 878, 2555, 2572 |
| BsoBI | CYCGRG | 2 cut(s) | 923, 2504 |
| Bsp1286I | GDGCHC | 2 cut(s) | 43, 960 |
| BspACI | CCGC | 5 cut(s) | 167, 170, 1534, 2657, 3033 |
| BspCNI | CTCAG | 7 cut(s) | 643, 1269, 1366, 1920, 2613, 2764, 2779 |
| BspDI | ATCGAT | 2 cut(s) | 3272, 3496 |
| BspFNI | CGCG | 1 cut(s) | 2202 |
| BspHI | TCATGA | 2 cut(s) | 1219, 1615 |
| BspLI | GGNNCC | 6 cut(s) | 790, 1006, 1610, 1699, 2886, 3443 |
| BspMAI | CTGCAG | 1 cut(s) | 191 |
| BspMI | ACCTGC | 1 cut(s) | 3004 |
| BspOI | GCTAGC | 2 cut(s) | 1602, 2295 |
| BspPI | GGATC | 5 cut(s) | 281, 2030, 3119, 3197, 3291 |
| BspQI | GCTCTTC | 2 cut(s) | 1716, 3199 |
| BspTI | CTTAAG | 1 cut(s) | 2560 |
| BsrDI | GCAATG | 7 cut(s) | 187, 331, 505, 883, 1020, 1057, 2437 |
| BssECI | CCNNGG | 7 cut(s) | 274, 924, 2247, 2403, 2484, 2504, 3437 |
| BssNI | GRCGYC | 1 cut(s) | 1203 |
| BssSI | CACGAG | 1 cut(s) | 642 |
| BssT1I | CCWWGG | 2 cut(s) | 2247, 3437 |
| Bst2BI | CACGAG | 1 cut(s) | 642 |
| Bst2UI | CCWGG | 6 cut(s) | 194, 276, 2485, 2572, 2684, 3048 |
| Bst4CI | ACNGT | 7 cut(s) | 99, 251, 397, 1576, 2464, 2481, 2677 |
| Bst6I | CTCTTC | 9 cut(s) | 482, 509, 629, 700, 897, 968, 1716, 3118, 3199 |
| BstACI | GRCGYC | 1 cut(s) | 1203 |
| BstAFI | CTTAAG | 1 cut(s) | 2560 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 186 |
| BstC8I | GCNNGC | 6 cut(s) | 268, 1128, 1600, 2293, 2919, 2938 |
| BstDEI | CTNAG | 9 cut(s) | 348, 651, 1277, 1374, 1716, 1928, 2621, 2751, 2787 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 2246, 2271 |
| BstFNI | CGCG | 1 cut(s) | 2202 |
| BstHHI | GCGC | 3 cut(s) | 1731, 1813, 2204 |
| BstMAI | GTCTC | 2 cut(s) | 2579, 2666 |
| BstMWI | GCNNNNNNNGC | 9 cut(s) | 186, 1066, 1549, 1706, 2123, 2301, 2552, 2812, 2918 |
| BstNI | CCWGG | 6 cut(s) | 194, 276, 2485, 2572, 2684, 3048 |
| BstNSI | RCATGY | 4 cut(s) | 1556, 2099, 2977, 3166 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2622 |
| BstSCI | CCNGG | 8 cut(s) | 192, 274, 2483, 2503, 2504, 2570, 2682, 3046 |
| BstSFI | CTRYAG | 3 cut(s) | 187, 2121, 3309 |
| BstUI | CGCG | 1 cut(s) | 2202 |
| BstX2I | RGATCY | 3 cut(s) | 3111, 3202, 3283 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 1175, 1739, 3029 |
| BstYI | RGATCY | 3 cut(s) | 3111, 3202, 3283 |
| Bsu15I | ATCGAT | 2 cut(s) | 3272, 3496 |
| BsuI | GTATCC | 1 cut(s) | 2653 |
| BsuTUI | ATCGAT | 2 cut(s) | 3272, 3496 |
| BtrI | CACGTC | 1 cut(s) | 3412 |
| BtsI | GCAGTG | 2 cut(s) | 380, 2432 |
| BtsIMutI | CAGTG | 9 cut(s) | 27, 52, 380, 1581, 1835, 2156, 2432, 2682, 2826 |
| BveI | ACCTGC | 1 cut(s) | 3004 |
| Cac8I | GCNNGC | 6 cut(s) | 268, 1128, 1600, 2293, 2919, 2938 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1243, 2158 |
| CciI | TCATGA | 2 cut(s) | 1219, 1615 |
| CfoI | GCGC | 3 cut(s) | 1731, 1813, 2204 |
| Cfr13I | GGNCC | 9 cut(s) | 63, 149, 1005, 1165, 1186, 1531, 1608, 2885, 3442 |
| Cfr9I | CCCGGG | 1 cut(s) | 2504 |
| ClaI | ATCGAT | 2 cut(s) | 3272, 3496 |
| CseI | GACGC | 1 cut(s) | 1211 |
| CsiI | ACCWGGT | 1 cut(s) | 2682 |
| Csp6I | GTAC | 6 cut(s) | 70, 1521, 2168, 2680, 2770, 3404 |
| CviQI | GTAC | 6 cut(s) | 70, 1521, 2168, 2680, 2770, 3404 |
| DdeI | CTNAG | 9 cut(s) | 348, 651, 1277, 1374, 1716, 1928, 2621, 2751, 2787 |
| DraI | TTTAAA | 1 cut(s) | 1446 |
| DraIII | CACNNNGTG | 1 cut(s) | 1342 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 3416 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 3416 |
| EaeI | YGGCCR | 3 cut(s) | 171, 2302, 2368 |
| Eam1104I | CTCTTC | 9 cut(s) | 482, 509, 629, 700, 897, 968, 1716, 3118, 3199 |
| EarI | CTCTTC | 9 cut(s) | 482, 509, 629, 700, 897, 968, 1716, 3118, 3199 |
| EciI | GGCGGA | 1 cut(s) | 3048 |
| Eco130I | CCWWGG | 2 cut(s) | 2247, 3437 |
| Eco147I | AGGCCT | 1 cut(s) | 640 |
| Eco47I | GGWCC | 5 cut(s) | 149, 1531, 1608, 2885, 3442 |
| Eco57I | CTGAAG | 1 cut(s) | 2651 |
| Eco88I | CYCGRG | 2 cut(s) | 923, 2504 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 2246, 2271 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2885 |
| EcoRI | GAATTC | 1 cut(s) | 1223 |
| EcoRII | CCWGG | 6 cut(s) | 192, 274, 2483, 2570, 2682, 3046 |
| EcoT14I | CCWWGG | 2 cut(s) | 2247, 3437 |
| EcoT22I | ATGCAT | 1 cut(s) | 3319 |
| ErhI | CCWWGG | 2 cut(s) | 2247, 3437 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1098, 1130 |
| FaqI | GGGAC | 7 cut(s) | 38, 629, 1214, 1594, 3352, 3452, 3455 |
| FbaI | TGATCA | 2 cut(s) | 235, 829 |
| GlaI | GCGC | 3 cut(s) | 1730, 1812, 2203 |
| GsaI | CCCAGC | 2 cut(s) | 1713, 2763 |
| GsuI | CTGGAG | 1 cut(s) | 123 |
| HapII | CCGG | 3 cut(s) | 591, 1008, 2505 |
| HgaI | GACGC | 1 cut(s) | 1211 |
| HhaI | GCGC | 3 cut(s) | 1731, 1813, 2204 |
| Hin1I | GRCGYC | 1 cut(s) | 1203 |
| Hin6I | GCGC | 3 cut(s) | 1729, 1811, 2202 |
| HinP1I | GCGC | 3 cut(s) | 1729, 1811, 2202 |
| HincII | GTYRAC | 4 cut(s) | 1777, 1958, 2694, 3019 |
| HindII | GTYRAC | 4 cut(s) | 1777, 1958, 2694, 3019 |
| HpaI | GTTAAC | 1 cut(s) | 1777 |
| HpaII | CCGG | 3 cut(s) | 591, 1008, 2505 |
| HphI | GGTGA | 9 cut(s) | 125, 449, 542, 1190, 1829, 1900, 2149, 2725, 2812 |
| HpyCH4III | ACNGT | 7 cut(s) | 99, 251, 397, 1576, 2464, 2481, 2677 |
| HpyCH4IV | ACGT | 1 cut(s) | 3411 |
| HpyF10VI | GCNNNNNNNGC | 9 cut(s) | 186, 1066, 1549, 1706, 2123, 2301, 2552, 2812, 2918 |
| HpyF3I | CTNAG | 9 cut(s) | 348, 651, 1277, 1374, 1716, 1928, 2621, 2751, 2787 |
| HpySE526I | ACGT | 1 cut(s) | 3411 |
| Hsp92I | GRCGYC | 1 cut(s) | 1203 |
| HspAI | GCGC | 3 cut(s) | 1729, 1811, 2202 |
| Ksp22I | TGATCA | 2 cut(s) | 235, 829 |
| KspAI | GTTAAC | 1 cut(s) | 1777 |
| LguI | GCTCTTC | 2 cut(s) | 1716, 3199 |
| LweI | GCATC | 8 cut(s) | 70, 1071, 1225, 1296, 1696, 3247, 3304, 3326 |
| MabI | ACCWGGT | 1 cut(s) | 2682 |
| MaeII | ACGT | 1 cut(s) | 3411 |
| MaeIII | GTNAC | 7 cut(s) | 280, 2137, 2154, 2374, 2822, 2858, 3137 |
| MfeI | CAATTG | 1 cut(s) | 947 |
| MflI | RGATCY | 3 cut(s) | 3111, 3202, 3283 |
| MhlI | GDGCHC | 2 cut(s) | 43, 960 |
| MlsI | TGGCCA | 1 cut(s) | 2304 |
| MluNI | TGGCCA | 1 cut(s) | 2304 |
| MlyI | GAGTC | 5 cut(s) | 2134, 2632, 2699, 2724, 3208 |
| MmeI | TCCRAC | 3 cut(s) | 57, 379, 2707 |
| Mox20I | TGGCCA | 1 cut(s) | 2304 |
| Mph1103I | ATGCAT | 1 cut(s) | 3319 |
| MroXI | GAANNNNTTC | 2 cut(s) | 1137, 3150 |
| MscI | TGGCCA | 1 cut(s) | 2304 |
| MslI | CAYNNNNRTG | 6 cut(s) | 480, 1173, 1295, 2100, 2213, 2522 |
| Msp20I | TGGCCA | 1 cut(s) | 2304 |
| MspA1I | CMGCKG | 1 cut(s) | 2657 |
| MspCI | CTTAAG | 1 cut(s) | 2560 |
| MspI | CCGG | 3 cut(s) | 591, 1008, 2505 |
| MspR9I | CCNGG | 8 cut(s) | 194, 276, 2485, 2505, 2506, 2572, 2684, 3048 |
| MunI | CAATTG | 1 cut(s) | 947 |
| Mva1269I | GAATGC | 4 cut(s) | 310, 878, 2555, 2572 |
| MvaI | CCWGG | 6 cut(s) | 194, 276, 2485, 2572, 2684, 3048 |
| MvnI | CGCG | 1 cut(s) | 2202 |
| MwoI | GCNNNNNNNGC | 9 cut(s) | 186, 1066, 1549, 1706, 2123, 2301, 2552, 2812, 2918 |
| NciI | CCSGG | 2 cut(s) | 2505, 2506 |
| NheI | GCTAGC | 2 cut(s) | 1598, 2291 |
| NlaIV | GGNNCC | 6 cut(s) | 790, 1006, 1610, 1699, 2886, 3443 |
| NmeAIII | GCCGAG | 1 cut(s) | 2428 |
| NmuCI | GTSAC | 6 cut(s) | 280, 2137, 2154, 2374, 2822, 3137 |
| NsiI | ATGCAT | 1 cut(s) | 3319 |
| NspI | RCATGY | 4 cut(s) | 1556, 2099, 2977, 3166 |
| PagI | TCATGA | 2 cut(s) | 1219, 1615 |
| PceI | AGGCCT | 1 cut(s) | 640 |
| PciI | ACATGT | 1 cut(s) | 3162 |
| PciSI | GCTCTTC | 2 cut(s) | 1716, 3199 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3417 |
| PctI | GAATGC | 4 cut(s) | 310, 878, 2555, 2572 |
| PdmI | GAANNNNTTC | 2 cut(s) | 1137, 3150 |
| PfeI | GAWTC | 6 cut(s) | 647, 1318, 1483, 1508, 1919, 2003 |
| PflMI | CCANNNNNTGG | 3 cut(s) | 146, 2956, 3438 |
| PfoI | TCCNGGA | 1 cut(s) | 3046 |
| PleI | GAGTC | 5 cut(s) | 2134, 2631, 2698, 2724, 3208 |
| PpsI | GAGTC | 5 cut(s) | 2134, 2631, 2698, 2724, 3208 |
| PpuMI | RGGWCCY | 1 cut(s) | 2885 |
| PscI | ACATGT | 1 cut(s) | 3162 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2622 |
| PshBI | ATTAAT | 3 cut(s) | 1803, 3149, 3392 |
| PsiI | TTATAA | 1 cut(s) | 726 |
| Psp5II | RGGWCCY | 1 cut(s) | 2885 |
| Psp6I | CCWGG | 6 cut(s) | 192, 274, 2483, 2570, 2682, 3046 |
| PspFI | CCCAGC | 2 cut(s) | 1709, 2759 |
| PspGI | CCWGG | 6 cut(s) | 192, 274, 2483, 2570, 2682, 3046 |
| PspN4I | GGNNCC | 6 cut(s) | 790, 1006, 1610, 1699, 2886, 3443 |
| PspPI | GGNCC | 9 cut(s) | 63, 149, 1005, 1165, 1186, 1531, 1608, 2885, 3442 |
| PspPPI | RGGWCCY | 1 cut(s) | 2885 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1083, 1115 |
| PstI | CTGCAG | 1 cut(s) | 191 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1243, 2158 |
| PsuI | RGATCY | 3 cut(s) | 3111, 3202, 3283 |
| RsaI | GTAC | 6 cut(s) | 71, 1522, 2169, 2681, 2771, 3405 |
| RsaNI | GTAC | 6 cut(s) | 70, 1521, 2168, 2680, 2770, 3404 |
| RseI | CAYNNNNRTG | 6 cut(s) | 480, 1173, 1295, 2100, 2213, 2522 |
| SapI | GCTCTTC | 2 cut(s) | 1716, 3199 |
| Sau96I | GGNCC | 9 cut(s) | 63, 149, 1005, 1165, 1186, 1531, 1608, 2885, 3442 |
| SchI | GAGTC | 5 cut(s) | 2134, 2632, 2699, 2724, 3208 |
| ScrFI | CCNGG | 8 cut(s) | 194, 276, 2485, 2505, 2506, 2572, 2684, 3048 |
| SduI | GDGCHC | 2 cut(s) | 43, 960 |
| SexAI | ACCWGGT | 1 cut(s) | 2682 |
| SfaNI | GCATC | 8 cut(s) | 70, 1071, 1225, 1296, 1696, 3247, 3304, 3326 |
| SfcI | CTRYAG | 3 cut(s) | 187, 2121, 3309 |
| SinI | GGWCC | 5 cut(s) | 149, 1531, 1608, 2885, 3442 |
| SmaI | CCCGGG | 1 cut(s) | 2506 |
| SmiMI | CAYNNNNRTG | 6 cut(s) | 480, 1173, 1295, 2100, 2213, 2522 |
| SmlI | CTYRAG | 5 cut(s) | 2174, 2560, 2879, 3098, 3216 |
| SmoI | CTYRAG | 5 cut(s) | 2174, 2560, 2879, 3098, 3216 |
| SpeI | ACTAGT | 1 cut(s) | 2393 |
| SseBI | AGGCCT | 1 cut(s) | 640 |
| SsiI | CCGC | 5 cut(s) | 167, 170, 1534, 2657, 3033 |
| SspI | AATATT | 1 cut(s) | 2834 |
| StuI | AGGCCT | 1 cut(s) | 640 |
| StyD4I | CCNGG | 8 cut(s) | 192, 274, 2483, 2503, 2504, 2570, 2682, 3046 |
| StyI | CCWWGG | 2 cut(s) | 2247, 3437 |
| TaaI | ACNGT | 7 cut(s) | 99, 251, 397, 1576, 2464, 2481, 2677 |
| TaiI | ACGT | 1 cut(s) | 3414 |
| TaqI | TCGA | 8 cut(s) | 246, 960, 1227, 3040, 3272, 3298, 3420, 3496 |
| TatI | WGTACW | 1 cut(s) | 3403 |
| TauI | GCSGC | 2 cut(s) | 170, 173 |
| TfiI | GAWTC | 6 cut(s) | 647, 1318, 1483, 1508, 1919, 2003 |
| TscAI | CASTG | 9 cut(s) | 34, 52, 380, 1581, 1835, 2163, 2432, 2682, 2833 |
| TseFI | GTSAC | 6 cut(s) | 280, 2137, 2154, 2374, 2822, 3137 |
| Tsp45I | GTSAC | 6 cut(s) | 280, 2137, 2154, 2374, 2822, 3137 |
| TspDTI | ATGAA | 7 cut(s) | 1236, 1604, 2565, 2826, 3143, 3264, 3371 |
| TspMI | CCCGGG | 1 cut(s) | 2504 |
| TspRI | CASTG | 9 cut(s) | 34, 52, 380, 1581, 1835, 2163, 2432, 2682, 2833 |
| Van91I | CCANNNNNTGG | 3 cut(s) | 146, 2956, 3438 |
| Vha464I | CTTAAG | 1 cut(s) | 2560 |
| VpaK11BI | GGWCC | 5 cut(s) | 149, 1531, 1608, 2885, 3442 |
| VspI | ATTAAT | 3 cut(s) | 1803, 3149, 3392 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 2246, 2271 |
| XapI | RAATTY | 5 cut(s) | 427, 1223, 1260, 2357, 2716 |
| XceI | RCATGY | 4 cut(s) | 1556, 2099, 2977, 3166 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 200 |
| XmaI | CCCGGG | 1 cut(s) | 2504 |
| XmnI | GAANNNNTTC | 2 cut(s) | 1137, 3150 |
| Zsp2I | ATGCAT | 1 cut(s) | 3319 |