Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006832

Physical Location & Seq

Genomic Coordinates Reverse (-)

2649717 .. 2650870

Gene Structure 1154 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1032900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGGAGGCGAACCAACACCAAATGCCACAGCTTCATCAAATGAATGATGAAAATGACTTGAAGATGAGACAGGGGATGGGTGTTAAGCCAGGGGTTTTTCAGCAACATATATCCACAGGCCAGCATGCTTATCCGCATCAGCAGTTGAAATCAGGATCTCCATTTCCTATTCCATCATCAAACCAACTCCTTCAGGCTGCATCTCCTAAAATTTCGCAACATTCTTCTCCCCAAGTTGACCAGCAGAATCTACCGACTCACCCGAAAGCTGGAACACCATTGCAAACTGCCAGTTCACCTGTTGTCATGCCATCTCCTTCAACTCCCATGGCTCCATCCCCCATGGCAGGGGATTTTGAGAAACCTTCCTCACTACCAAATGCTGGGAATATCGGACATCAACAAGTAGCTGGGGTGGGAGCACCAGTCCAGTCCCTTGCATTTGGCACCGCTGGGATATCAGCATCTCCTTTGCTTGCTGAATTTAGTGTACCAGATGCTACTCATGTTAATGCTTTGTCAATTATTTTTGGCAAGTCGAGTGTTACCGAGCAGCCTCTTGAACGCTTGATTAAGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

194

Amino Acids

20.34

Weight (kDa)

6.74

Isoelectric Point (pI)

62.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15780 AT1G15780 AT1G15780
fragaria_vesca	FvH4_3g42370 FvH4_3g42370 FvH4_3g42370 FvH4_3g42370
malus_domestica	MD03G1032700.v1.1 MD03G1032900.v1.1 MD03G1033400.v1.1 MD03G1033700.v1.1 MD11G1036600.v1.1
prunus_persica	Prupe.6G027500_v2.0.a1 Prupe.6G027500_v2.0.a1 Prupe.6G027500_v2.0.a1
pyrus_communis	pycom11g03020
rosa_chinensis	RchiOBHm_Chr5g0075871
rosa_laevigata	RLG00000036598
rosa_multiflora	Rmu_sc0002652.1_g000022
rosa_roxburghii	Rroxscaffold_1G00005810
rosa_rugosa	Rorug05G0443000
rosa_samantha	Rh5AG500000 Rh5BG521200 Rh5CG545300 Rh5DG533900
rosa_wichuraiana	Rw5G046410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	446
AccB7I	CCANNNNNTGG	1 cut(s)	383
AciI	CCGC	2 cut(s)	134, 450
AclWI	GGATC	1 cut(s)	163
AcsI	RAATTY	2 cut(s)	210, 482
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	1 cut(s)	492
AfiI	CCNNNNNNNGG	4 cut(s)	269, 347, 348, 383
AgsI	TTSAA	4 cut(s)	61, 148, 321, 563
AjnI	CCWGG	1 cut(s)	88
AluBI	AGCT	3 cut(s)	31, 269, 410
AluI	AGCT	3 cut(s)	31, 269, 410
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	61
AlwI	GGATC	1 cut(s)	163
AoxI	GGCC	1 cut(s)	118
ApeKI	GCWGC	2 cut(s)	197, 553
ApoI	RAATTY	2 cut(s)	210, 482
AsuHPI	GGTGA	2 cut(s)	251, 288
BanI	GGYRCC	1 cut(s)	446
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	2 cut(s)	184, 565
BccI	CCATC	4 cut(s)	70, 181, 319, 343
BciT130I	CCWGG	1 cut(s)	90
BcoDI	GTCTC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	198, 554
BlsI	GCNGC	2 cut(s)	199, 555
Bme1390I	CCNGG	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	333, 448
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	4 cut(s)	145, 209, 473, 487
BsaJI	CCNNGG	3 cut(s)	89, 327, 342
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bsc4I	CCNNNNNNNGG	4 cut(s)	269, 347, 348, 383
Bse1I	ACTGG	3 cut(s)	291, 425, 430
Bse3DI	GCAATG	1 cut(s)	278
BseBI	CCWGG	1 cut(s)	90
BseDI	CCNNGG	3 cut(s)	89, 327, 342
BseGI	GGATG	2 cut(s)	81, 335
BseLI	CCNNNNNNNGG	4 cut(s)	269, 347, 348, 383
BseMI	GCAATG	1 cut(s)	278
BseNI	ACTGG	3 cut(s)	291, 425, 430
BseXI	GCAGC	2 cut(s)	184, 565
BseYI	CCCAGC	3 cut(s)	383, 410, 452
BshFI	GGCC	1 cut(s)	120
BshNI	GGYRCC	1 cut(s)	446
BsiHKAI	GWGCWC	1 cut(s)	424
BslFI	GGGAC	1 cut(s)	418
BslI	CCNNNNNNNGG	4 cut(s)	269, 347, 348, 383
BsmAI	GTCTC	1 cut(s)	61
BsmFI	GGGAC	1 cut(s)	418
BsnI	GGCC	1 cut(s)	120
Bsp1286I	GDGCHC	1 cut(s)	424
Bsp143I	GATC	1 cut(s)	155
Bsp19I	CCATGG	2 cut(s)	327, 342
BspACI	CCGC	2 cut(s)	134, 450
BspANI	GGCC	1 cut(s)	120
BspLI	GGNNCC	2 cut(s)	333, 448
BspPI	GGATC	1 cut(s)	163
BspT107I	GGYRCC	1 cut(s)	446
BsrDI	GCAATG	1 cut(s)	278
BsrI	ACTGG	3 cut(s)	291, 425, 430
BssECI	CCNNGG	3 cut(s)	89, 327, 342
BssMI	GATC	1 cut(s)	155
BssT1I	CCWWGG	2 cut(s)	327, 342
Bst2UI	CCWGG	1 cut(s)	90
BstC8I	GCNNGC	3 cut(s)	122, 126, 477
BstDSI	CCRYGG	2 cut(s)	327, 342
BstF5I	GGATG	2 cut(s)	81, 335
BstKTI	GATC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	61
BstMBI	GATC	1 cut(s)	155
BstNI	CCWGG	1 cut(s)	90
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	88
BstV1I	GCAGC	2 cut(s)	184, 565
BstX2I	RGATCY	1 cut(s)	155
BstYI	RGATCY	1 cut(s)	155
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	2 cut(s)	327, 342
BtsCI	GGATG	2 cut(s)	81, 335
Cac8I	GCNNGC	3 cut(s)	122, 126, 477
Csp6I	GTAC	1 cut(s)	491
CviAII	CATG	5 cut(s)	125, 307, 328, 343, 506
CviJI	RGCY	8 cut(s)	31, 88, 120, 197, 269, 332, 410, 556
CviKI_1	RGCY	8 cut(s)	31, 88, 120, 197, 269, 332, 410, 556
CviQI	GTAC	1 cut(s)	491
DpnI	GATC	1 cut(s)	157
DpnII	GATC	1 cut(s)	155
Eco130I	CCWWGG	2 cut(s)	327, 342
Eco32I	GATATC	1 cut(s)	459
Eco57I	CTGAAG	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	88
EcoRV	GATATC	1 cut(s)	459
EcoT14I	CCWWGG	2 cut(s)	327, 342
ErhI	CCWWGG	2 cut(s)	327, 342
FaeI	CATG	5 cut(s)	128, 310, 331, 346, 509
FaiI	YATR	7 cut(s)	108, 110, 126, 308, 329, 344, 507
FaqI	GGGAC	1 cut(s)	418
FatI	CATG	5 cut(s)	124, 306, 327, 342, 505
Fnu4HI	GCNGC	2 cut(s)	198, 554
FokI	GGATG	2 cut(s)	88, 322
Fsp4HI	GCNGC	2 cut(s)	198, 554
GluI	GCNGC	2 cut(s)	198, 554
GsaI	CCCAGC	3 cut(s)	387, 414, 456
HaeIII	GGCC	1 cut(s)	120
Hin1II	CATG	5 cut(s)	128, 310, 331, 346, 509
HincII	GTYRAC	1 cut(s)	238
HindII	GTYRAC	1 cut(s)	238
HinfI	GANTC	2 cut(s)	247, 256
HphI	GGTGA	2 cut(s)	251, 288
Hpy166II	GTNNAC	3 cut(s)	238, 296, 491
Hpy188I	TCNGA	1 cut(s)	395
Hpy188III	TCNNGA	2 cut(s)	153, 560
Hpy8I	GTNNAC	3 cut(s)	238, 296, 491
HpyAV	CCTTC	3 cut(s)	200, 327, 375
HpyCH4V	TGCA	3 cut(s)	200, 283, 440
Hsp92II	CATG	5 cut(s)	128, 310, 331, 346, 509
Kzo9I	GATC	1 cut(s)	155
LmnI	GCTCC	2 cut(s)	337, 419
Lsp1109I	GCAGC	2 cut(s)	184, 565
LweI	GCATC	4 cut(s)	145, 209, 473, 487
MaeIII	GTNAC	1 cut(s)	544
MalI	GATC	1 cut(s)	157
MboI	GATC	1 cut(s)	155
MboII	GAAGA	2 cut(s)	73, 216
MflI	RGATCY	1 cut(s)	155
MhlI	GDGCHC	1 cut(s)	424
MluCI	AATT	3 cut(s)	210, 482, 522
MlyI	GAGTC	1 cut(s)	250
MnlI	CCTC	2 cut(s)	379, 567
MseI	TTAA	3 cut(s)	84, 510, 573
MslI	CAYNNNNRTG	1 cut(s)	510
MspA1I	CMGCKG	1 cut(s)	452
MspR9I	CCNGG	1 cut(s)	90
MvaI	CCWGG	1 cut(s)	90
NcoI	CCATGG	2 cut(s)	327, 342
NdeII	GATC	1 cut(s)	155
NlaIII	CATG	5 cut(s)	128, 310, 331, 346, 509
NlaIV	GGNNCC	2 cut(s)	333, 448
NspI	RCATGY	1 cut(s)	128
PaeI	GCATGC	1 cut(s)	128
PfeI	GAWTC	1 cut(s)	247
PflMI	CCANNNNNTGG	1 cut(s)	383
PkrI	GCNGC	2 cut(s)	199, 555
PleI	GAGTC	1 cut(s)	250
PpsI	GAGTC	1 cut(s)	250
Psp6I	CCWGG	1 cut(s)	88
PspFI	CCCAGC	3 cut(s)	383, 410, 452
PspGI	CCWGG	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	333, 448
PsuI	RGATCY	1 cut(s)	155
RsaI	GTAC	1 cut(s)	492
RsaNI	GTAC	1 cut(s)	491
RseI	CAYNNNNRTG	1 cut(s)	510
SaqAI	TTAA	3 cut(s)	84, 510, 573
SatI	GCNGC	2 cut(s)	198, 554
Sau3AI	GATC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	250
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	1 cut(s)	424
SetI	ASST	5 cut(s)	33, 271, 301, 367, 412
SfaNI	GCATC	4 cut(s)	145, 209, 473, 487
SmiMI	CAYNNNNRTG	1 cut(s)	510
SphI	GCATGC	1 cut(s)	128
Sse9I	AATT	3 cut(s)	210, 482, 522
SsiI	CCGC	2 cut(s)	134, 450
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	2 cut(s)	327, 342
TaqI	TCGA	1 cut(s)	539
TasI	AATT	3 cut(s)	210, 482, 522
TfiI	GAWTC	1 cut(s)	247
Tru1I	TTAA	3 cut(s)	84, 510, 573
Tru9I	TTAA	3 cut(s)	84, 510, 573
TseI	GCWGC	2 cut(s)	197, 553
TspDTI	ATGAA	3 cut(s)	23, 56, 63
Van91I	CCANNNNNTGG	1 cut(s)	383
XapI	RAATTY	2 cut(s)	210, 482
XceI	RCATGY	1 cut(s)	128

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.