Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006832

Physical Location & Seq

Genomic Coordinates Reverse (-)

2676020 .. 2678025

Gene Structure 2006 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1033400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGTTCAAAACCATGTTAGAGCGCCTCATATCAGTCTTACAGATTTCCAAGAGTAATGTTTCACCTGGTTTGAAAGATAATTTGGGTTTATATGAGAAGCAGATAGTAAATTTTATTAATACAAATAGACCACGGAAGCAAGATCCTCTGCAACAAGGGCAGTTCCCCCCACCTCATATGCACTCCATGCAGCAGCCGCAGTCTCAAATTCGTCAAGTGCAGTCTCATGAAAATCAAATGAACCCGCAGTTGCAAACAATGAATTTACAAGGTTCTGTGCCAACAATGCAGCAGAACTATATGACAAGCTCGGAGCAAAATTCAATGTCTTCGATTTCTGGGGTTTCAACAGCACAGCAGAACATGATGAATTCATTGCAGCCAAGTACAAATTTGGATTCAGGACAGGGAAATGCACCGAACTCTTTGCAGCAAGTTCCGGTGGGATCTATCCAACAAACTCCTGTCAGTGCTCCCCAGCAAGCTAACATGAATGGTCTGTCATCGCAGAGTGGGGTTAGTATGCTTCAGCCAAATATTATCTCCCTTCAGTCAAATTCTGGTATGCTTCAACACCAGCAATTAAAACAGCAGGAACAGCAAATGTTTCAGAATCAACTGAAGCAACAGTATCAACAGCGAATGCAGCAGCAATTGATACAGAAGCAGCAGATACTGCAACAGCAACAGCAGCAGCAACAGTTGCAGCAAGCAAAGCAGCAGCTTCCGGCGCAGATGGAGGCGAACCAACACCAAATGCCACTGCTTCATCAAATGAATGATGCAAATGACTTGAAGATGAGACAGGGGATGGGTGTTAAGCCAGGGGTTTTTCAGCAACATATATCCGCAGGCCAGCGTGCTTATCCACATCAGCAGTTGAAATTAGGATCTCCATTTCCTATTCCATCATCAAACCAACTCATTCAGGCTGCATCTCGTCAAATTTCGCAACATTCTTCTCCCCAAGTTGACCACAAGAATCTACTGACTCACCTGAAAGCTGGAACACCATTGCAAACTGCCGGTTCACCTGTTGTCATCCCATCTCCTTCAACTCCCATGGTTCCATCCCCCATGCCAGGGGATTCTGAGAAACCTTCCTCACTACCAAATGCTGGGAATATCGGACATCAACAAGCAGCTGGGGTGGGAGCACCAGTCCAGTCCCTTGCAATTGGCACTAGTGGGATGTTGGCATCTCCTTTGCTTGCTGAATTTATTGTACCAGATGCTAGTCATGTTAATGCTTTGTCAACTATTTCTGGCAAATCGAGTGTTACCGAGCAGCCTCTTGAACGCTTGATTAAGGCGGTGAAATCGATGTCACCTAATGCATTGAGTGCATCTGTCAGTGACATTGGCTCAGATGCATTGAGTGCATCTGTTTGCTGCTGTGAGGTGGAAGGCTGGGCGTTGTCATCGGTGTGGTGCTGCTACTCCCGCCACTGCTGCTGCCAGAAGAAGAAACAAGGGCAAGAAGGATGTGACGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

499

Amino Acids

54.27

Weight (kDa)

8.91

Isoelectric Point (pI)

68.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15780 AT1G15780 AT1G15780
fragaria_vesca	FvH4_3g42370 FvH4_3g42370 FvH4_3g42370 FvH4_3g42370
malus_domestica	MD03G1032700.v1.1 MD03G1032900.v1.1 MD03G1033400.v1.1 MD03G1033700.v1.1 MD11G1036600.v1.1
prunus_persica	Prupe.6G027500_v2.0.a1 Prupe.6G027500_v2.0.a1 Prupe.6G027500_v2.0.a1
pyrus_communis	pycom11g03020
rosa_chinensis	RchiOBHm_Chr5g0075871
rosa_laevigata	RLG00000036598
rosa_multiflora	Rmu_sc0002652.1_g000022
rosa_roxburghii	Rroxscaffold_1G00005810
rosa_rugosa	Rorug05G0443000
rosa_samantha	Rh5AG500000 Rh5BG521200 Rh5CG545300 Rh5DG533900
rosa_wichuraiana	Rw5G046410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1118
AciI	CCGC	5 cut(s)	197, 245, 849, 1313, 1444
AclWI	GGATC	3 cut(s)	137, 454, 898
AcsI	RAATTY	9 cut(s)	109, 207, 262, 319, 370, 391, 556, 945, 1217
AcuI	CTGAAG	3 cut(s)	512, 533, 641
AfaI	GTAC	2 cut(s)	388, 1227
AfiI	CCNNNNNNNGG	3 cut(s)	1082, 1083, 1118
AgsI	TTSAA	9 cut(s)	7, 73, 324, 348, 572, 796, 883, 1056, 1298
AhlI	ACTAGT	1 cut(s)	1184
AjnI	CCWGG	3 cut(s)	64, 823, 1081
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	309, 485, 724, 1004, 1145
AluI	AGCT	5 cut(s)	309, 485, 724, 1004, 1145
Alw21I	GWGCWC	2 cut(s)	475, 1159
Alw26I	GTCTC	3 cut(s)	207, 228, 796
AlwI	GGATC	3 cut(s)	137, 454, 898
AlwNI	CAGNNNCTG	1 cut(s)	676
AoxI	GGCC	1 cut(s)	853
ApoI	RAATTY	9 cut(s)	109, 207, 262, 319, 370, 391, 556, 945, 1217
AseI	ATTAAT	1 cut(s)	117
AspLEI	GCGC	2 cut(s)	24, 733
AsuHPI	GGTGA	5 cut(s)	54, 986, 1023, 1320, 1327
BbsI	GAAGAC	1 cut(s)	321
Bbv12I	GWGCWC	2 cut(s)	475, 1159
BccI	CCATC	5 cut(s)	730, 805, 916, 1054, 1078
BcgI	CGANNNNNNTGC	2 cut(s)	409, 443
BciT130I	CCWGG	3 cut(s)	66, 825, 1083
BcoDI	GTCTC	3 cut(s)	207, 228, 796
BcuI	ACTAGT	1 cut(s)	1184
BfaI	CTAG	2 cut(s)	1185, 1236
BfoI	RGCGCY	1 cut(s)	25
Bme1390I	CCNGG	3 cut(s)	66, 825, 1083
BmiI	GGNNCC	1 cut(s)	1068
BmrFI	CCNGG	3 cut(s)	66, 825, 1083
BmsI	GCATC	7 cut(s)	772, 944, 1208, 1222, 1355, 1360, 1391
BpiI	GAAGAC	1 cut(s)	321
Bsa29I	ATCGAT	1 cut(s)	1322
BsaJI	CCNNGG	4 cut(s)	131, 824, 1062, 1082
BsaWI	WCCGGW	1 cut(s)	439
BsaXI	ACNNNNNCTCC	2 cut(s)	1146, 1176
Bsc4I	CCNNNNNNNGG	3 cut(s)	1082, 1083, 1118
Bse118I	RCCGGY	1 cut(s)	1025
Bse1I	ACTGG	2 cut(s)	1160, 1165
Bse3DI	GCAATG	2 cut(s)	374, 1013
BseBI	CCWGG	3 cut(s)	66, 825, 1083
BseCI	ATCGAT	1 cut(s)	1322
BseDI	CCNNGG	4 cut(s)	131, 824, 1062, 1082
BseGI	GGATG	5 cut(s)	816, 1041, 1070, 1197, 1490
BseLI	CCNNNNNNNGG	3 cut(s)	1082, 1083, 1118
BseMI	GCAATG	2 cut(s)	374, 1013
BseMII	CTCAG	2 cut(s)	1083, 1380
BseNI	ACTGG	2 cut(s)	1160, 1165
BseYI	CCCAGC	4 cut(s)	477, 1118, 1145, 1410
BsgI	GTGCAG	1 cut(s)	239
BshFI	GGCC	1 cut(s)	855
BshVI	ATCGAT	1 cut(s)	1322
BsiHKAI	GWGCWC	2 cut(s)	475, 1159
BsiSI	CCGG	3 cut(s)	440, 728, 1026
BslFI	GGGAC	1 cut(s)	1153
BslI	CCNNNNNNNGG	3 cut(s)	1082, 1083, 1118
BsmAI	GTCTC	3 cut(s)	207, 228, 796
BsmFI	GGGAC	1 cut(s)	1153
BsmI	GAATGC	1 cut(s)	648
BsnI	GGCC	1 cut(s)	855
Bsp1286I	GDGCHC	2 cut(s)	475, 1159
Bsp143I	GATC	3 cut(s)	142, 446, 890
Bsp19I	CCATGG	1 cut(s)	1062
BspACI	CCGC	5 cut(s)	197, 245, 849, 1313, 1444
BspANI	GGCC	1 cut(s)	855
BspCNI	CTCAG	2 cut(s)	1084, 1379
BspDI	ATCGAT	1 cut(s)	1322
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	1068
BspPI	GGATC	3 cut(s)	137, 454, 898
BsrDI	GCAATG	2 cut(s)	374, 1013
BsrFI	RCCGGY	1 cut(s)	1025
BsrI	ACTGG	2 cut(s)	1160, 1165
BssAI	RCCGGY	1 cut(s)	1025
BssECI	CCNNGG	4 cut(s)	131, 824, 1062, 1082
BssMI	GATC	3 cut(s)	142, 446, 890
BssT1I	CCWWGG	1 cut(s)	1062
Bst2UI	CCWGG	3 cut(s)	66, 825, 1083
Bst4CI	ACNGT	2 cut(s)	630, 702
BstAPI	GCANNNNNTGC	5 cut(s)	187, 676, 703, 1343, 1379
BstC8I	GCNNGC	6 cut(s)	483, 711, 853, 857, 861, 1212
BstDEI	CTNAG	2 cut(s)	1092, 1366
BstDSI	CCRYGG	2 cut(s)	131, 1062
BstF5I	GGATG	5 cut(s)	816, 1041, 1070, 1197, 1490
BstH2I	RGCGCY	1 cut(s)	25
BstHHI	GCGC	2 cut(s)	24, 733
BstKTI	GATC	3 cut(s)	145, 449, 893
BstMAI	GTCTC	3 cut(s)	207, 228, 796
BstMBI	GATC	3 cut(s)	142, 446, 890
BstNI	CCWGG	3 cut(s)	66, 825, 1083
BstSCI	CCNGG	3 cut(s)	64, 823, 1081
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	3 cut(s)	142, 446, 890
BstYI	RGATCY	3 cut(s)	142, 446, 890
Bsu15I	ATCGAT	1 cut(s)	1322
BsuRI	GGCC	1 cut(s)	855
BsuTUI	ATCGAT	1 cut(s)	1322
BtgI	CCRYGG	2 cut(s)	131, 1062
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	5 cut(s)	816, 1041, 1070, 1197, 1490
BtsI	GCAGTG	2 cut(s)	761, 1447
BtsIMutI	CAGTG	4 cut(s)	475, 761, 1360, 1447
Cac8I	GCNNGC	6 cut(s)	483, 711, 853, 857, 861, 1212
CaiI	CAGNNNCTG	1 cut(s)	676
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	2 cut(s)	24, 733
Cfr10I	RCCGGY	1 cut(s)	1025
ClaI	ATCGAT	1 cut(s)	1322
CsiI	ACCWGGT	1 cut(s)	64
Csp6I	GTAC	2 cut(s)	387, 1226
CviAII	CATG	8 cut(s)	13, 187, 227, 364, 490, 1063, 1078, 1241
CviQI	GTAC	2 cut(s)	387, 1226
DdeI	CTNAG	2 cut(s)	1092, 1366
DpnI	GATC	3 cut(s)	144, 448, 892
DpnII	GATC	3 cut(s)	142, 446, 890
Eco130I	CCWWGG	1 cut(s)	1062
Eco57I	CTGAAG	3 cut(s)	512, 533, 641
EcoRI	GAATTC	1 cut(s)	370
EcoRII	CCWGG	3 cut(s)	64, 823, 1081
EcoT14I	CCWWGG	1 cut(s)	1062
EcoT22I	ATGCAT	2 cut(s)	1339, 1375
ErhI	CCWWGG	1 cut(s)	1062
FaeI	CATG	8 cut(s)	16, 190, 230, 367, 493, 1066, 1081, 1244
FaqI	GGGAC	1 cut(s)	1153
FatI	CATG	8 cut(s)	12, 186, 226, 363, 489, 1062, 1077, 1240
FauI	CCCGC	2 cut(s)	252, 1451
FauNDI	CATATG	1 cut(s)	177
FokI	GGATG	4 cut(s)	823, 1028, 1057, 1204
FspBI	CTAG	2 cut(s)	1185, 1236
GlaI	GCGC	2 cut(s)	23, 732
GsaI	CCCAGC	4 cut(s)	481, 1122, 1149, 1414
HaeII	RGCGCY	1 cut(s)	25
HaeIII	GGCC	1 cut(s)	855
HapII	CCGG	3 cut(s)	440, 728, 1026
HhaI	GCGC	2 cut(s)	24, 733
Hin1II	CATG	8 cut(s)	16, 190, 230, 367, 493, 1066, 1081, 1244
Hin6I	GCGC	2 cut(s)	22, 731
HinP1I	GCGC	2 cut(s)	22, 731
HincII	GTYRAC	2 cut(s)	973, 1257
HindII	GTYRAC	2 cut(s)	973, 1257
HinfI	GANTC	5 cut(s)	398, 613, 982, 991, 1088
HpaII	CCGG	3 cut(s)	440, 728, 1026
HphI	GGTGA	5 cut(s)	54, 986, 1023, 1320, 1327
Hpy166II	GTNNAC	3 cut(s)	973, 1031, 1257
Hpy188I	TCNGA	5 cut(s)	313, 612, 1093, 1130, 1369
Hpy188III	TCNNGA	3 cut(s)	227, 402, 1295
Hpy8I	GTNNAC	3 cut(s)	973, 1031, 1257
HpyAV	CCTTC	5 cut(s)	557, 1062, 1110, 1400, 1475
HpyCH4III	ACNGT	2 cut(s)	630, 702
HpyF3I	CTNAG	2 cut(s)	1092, 1366
Hsp92II	CATG	8 cut(s)	16, 190, 230, 367, 493, 1066, 1081, 1244
HspAI	GCGC	2 cut(s)	22, 731
Kzo9I	GATC	3 cut(s)	142, 446, 890
LmnI	GCTCC	3 cut(s)	313, 478, 1154
LweI	GCATC	7 cut(s)	772, 944, 1208, 1222, 1355, 1360, 1391
MabI	ACCWGGT	1 cut(s)	64
MaeI	CTAG	2 cut(s)	1185, 1236
MaeIII	GTNAC	4 cut(s)	1279, 1326, 1355, 1487
MalI	GATC	3 cut(s)	144, 448, 892
MboI	GATC	3 cut(s)	142, 446, 890
MboII	GAAGA	5 cut(s)	321, 808, 951, 1474, 1477
MfeI	CAATTG	2 cut(s)	653, 1176
MflI	RGATCY	3 cut(s)	142, 446, 890
MhlI	GDGCHC	2 cut(s)	475, 1159
MlyI	GAGTC	1 cut(s)	985
MmeI	TCCRAC	1 cut(s)	478
MnlI	CCTC	7 cut(s)	35, 156, 183, 733, 1114, 1302, 1393
Mph1103I	ATGCAT	2 cut(s)	1339, 1375
MseI	TTAA	5 cut(s)	117, 584, 819, 1245, 1308
MslI	CAYNNNNRTG	2 cut(s)	1245, 1426
MspA1I	CMGCKG	1 cut(s)	1145
MspI	CCGG	3 cut(s)	440, 728, 1026
MspR9I	CCNGG	3 cut(s)	66, 825, 1083
MunI	CAATTG	2 cut(s)	653, 1176
Mva1269I	GAATGC	1 cut(s)	648
MvaI	CCWGG	3 cut(s)	66, 825, 1083
NcoI	CCATGG	1 cut(s)	1062
NdeI	CATATG	1 cut(s)	177
NdeII	GATC	3 cut(s)	142, 446, 890
NlaIII	CATG	8 cut(s)	16, 190, 230, 367, 493, 1066, 1081, 1244
NlaIV	GGNNCC	1 cut(s)	1068
NmuCI	GTSAC	3 cut(s)	1326, 1355, 1487
NsiI	ATGCAT	2 cut(s)	1339, 1375
PagI	TCATGA	1 cut(s)	226
PctI	GAATGC	1 cut(s)	648
PfeI	GAWTC	4 cut(s)	398, 613, 982, 1088
PflMI	CCANNNNNTGG	1 cut(s)	1118
PleI	GAGTC	1 cut(s)	985
PpsI	GAGTC	1 cut(s)	985
PshBI	ATTAAT	1 cut(s)	117
Psp6I	CCWGG	3 cut(s)	64, 823, 1081
PspFI	CCCAGC	4 cut(s)	477, 1118, 1145, 1410
PspGI	CCWGG	3 cut(s)	64, 823, 1081
PspN4I	GGNNCC	1 cut(s)	1068
PstNI	CAGNNNCTG	1 cut(s)	676
PsuI	RGATCY	3 cut(s)	142, 446, 890
PvuII	CAGCTG	1 cut(s)	1145
RsaI	GTAC	2 cut(s)	388, 1227
RsaNI	GTAC	2 cut(s)	387, 1226
RseI	CAYNNNNRTG	2 cut(s)	1245, 1426
SaqAI	TTAA	5 cut(s)	117, 584, 819, 1245, 1308
Sau3AI	GATC	3 cut(s)	142, 446, 890
SchI	GAGTC	1 cut(s)	985
ScrFI	CCNGG	3 cut(s)	66, 825, 1083
SduI	GDGCHC	2 cut(s)	475, 1159
SexAI	ACCWGGT	1 cut(s)	64
SfaNI	GCATC	7 cut(s)	772, 944, 1208, 1222, 1355, 1360, 1391
SmiMI	CAYNNNNRTG	2 cut(s)	1245, 1426
SpeI	ACTAGT	1 cut(s)	1184
SsiI	CCGC	5 cut(s)	197, 245, 849, 1313, 1444
SspI	AATATT	1 cut(s)	538
SspMI	CTAG	2 cut(s)	1185, 1236
StyD4I	CCNGG	3 cut(s)	64, 823, 1081
StyI	CCWWGG	1 cut(s)	1062
TaaI	ACNGT	2 cut(s)	630, 702
TaqI	TCGA	3 cut(s)	332, 1274, 1322
TatI	WGTACW	1 cut(s)	386
TauI	GCSGC	1 cut(s)	199
TfiI	GAWTC	4 cut(s)	398, 613, 982, 1088
Tru1I	TTAA	5 cut(s)	117, 584, 819, 1245, 1308
Tru9I	TTAA	5 cut(s)	117, 584, 819, 1245, 1308
TscAI	CASTG	4 cut(s)	475, 768, 1360, 1454
TseFI	GTSAC	3 cut(s)	1326, 1355, 1487
Tsp45I	GTSAC	3 cut(s)	1326, 1355, 1487
TspDTI	ATGAA	8 cut(s)	243, 254, 275, 363, 383, 506, 758, 791
TspGWI	ACGGA	1 cut(s)	148
TspRI	CASTG	4 cut(s)	475, 768, 1360, 1454
Van91I	CCANNNNNTGG	1 cut(s)	1118
VspI	ATTAAT	1 cut(s)	117
XapI	RAATTY	9 cut(s)	109, 207, 262, 319, 370, 391, 556, 945, 1217
XspI	CTAG	2 cut(s)	1185, 1236
Zsp2I	ATGCAT	2 cut(s)	1339, 1375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.