Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006832

Physical Location & Seq

Genomic Coordinates Reverse (-)

61481758 .. 61483508

Gene Structure 1751 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0443000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGTCTACCACCGTAAGTAGAAAGAATCCATTGCAGAATGTTCCATGGAAGACCCGGCTACTCATGGAGTTCGGATCCTTCCTCTTTCGCGCCGCAATGCGACCCAACATGACCCTCAACCGCCGCCTCTTGACCCTCTTCGACCCTAAAGCCGCCGCTTCTTCCAAACCCAAAAACGGTGTCGTCTCCTTCGACGCCGCCGTCGACCCATCCCGCAACGTCTGGTTCCGCCTCTACACCACCACCTCCGCCAAGCTCCCCGTCATCTTCTTCATCCACGGCGGCGCCTACGTGTTCGGCGCCGCCGACTCCTTCGGCTCCGACGCCTCCTGCCGCCGCCTCTCCCGCCAACTCTCCGCCGCCGTCGTCTCCGTCAACTACCGCCTGGCGCCGGAGCACAAGTTCCCCTCCCAGCTCCGCGACGCCCTCGACTGCTTGAAATACCTCGACGATCACCACAGGGACGACGCGTTCAGCTGTGCTGACGTCAGCCGGTGCTTCGTGGCGGGAGAGAGCGCTGGAGGGAACCTGGCCCACCACGTGGCGCTGGGAGCCGGAGAGCTGGAGTTGAAGAAGGTGAGGGTGGTGGGGCTCGTTTCGATTCAGCCGTTCTTCGGCGGAGAGGAGAGAACCGAATCCGAGATCCGATTGGGTCGGGGCGCGCTGGGGTTGGACTCTACGGACTGGTGTTGGCGGGCGGTTTTACCGGACGGGTCGGACAGAGACCACCCGGCGGTGAATGTTTCGGGGCCCAATGCGGTGGACATTTCGGGTCGTGGGTACCCGGATACGCTTTGTTTTATTGGGGGGTTGGATTCGTTGAAGGATTGGGGGAGGAGGTACTGTGAGTGGTTGAAGAAGAGTGGGAAGAAGGTGGAGGTTGTGGAGTATCCGAATGCGATCCATGGGTTTATGTCGGTTCAGTGCGAACCCGAATATGGGATGTTTATAGAAGAGGTGAAGAATTTCATGCAGAAGCAGGACATGGCGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

331

Amino Acids

36.72

Weight (kDa)

8.56

Isoelectric Point (pI)

37.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	80 - 130	1.1e-06	Carboxylesterase family
BD-FAE	PF20434	81 - 187	3.9e-16	BD-FAE
Abhydrolase_3	PF07859	89 - 305	7.2e-56	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15780 AT1G15780 AT1G15780
fragaria_vesca	FvH4_3g42370 FvH4_3g42370 FvH4_3g42370 FvH4_3g42370
malus_domestica	MD03G1032700.v1.1 MD03G1032900.v1.1 MD03G1033400.v1.1 MD03G1033700.v1.1 MD11G1036600.v1.1
prunus_persica	Prupe.6G027500_v2.0.a1 Prupe.6G027500_v2.0.a1 Prupe.6G027500_v2.0.a1
pyrus_communis	pycom11g03020
rosa_chinensis	RchiOBHm_Chr5g0075871
rosa_laevigata	RLG00000036598
rosa_multiflora	Rmu_sc0002652.1_g000022
rosa_roxburghii	Rroxscaffold_1G00005810
rosa_rugosa	Rorug05G0443000
rosa_samantha	Rh5AG500000 Rh5BG521200 Rh5CG545300 Rh5DG533900
rosa_wichuraiana	Rw5G046410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	200
AatII	GACGTC	1 cut(s)	489
Acc65I	GGTACC	1 cut(s)	780
AccB1I	GGYRCC	4 cut(s)	284, 299, 388, 780
AccB7I	CCANNNNNTGG	1 cut(s)	541
AccI	GTMKAC	2 cut(s)	5, 204
AccII	CGCG	4 cut(s)	90, 420, 470, 662
AclWI	GGATC	4 cut(s)	69, 82, 637, 895
AcsI	RAATTY	1 cut(s)	964
AcvI	CACGTG	1 cut(s)	541
AcyI	GRCGYC	7 cut(s)	195, 285, 300, 324, 389, 423, 486
AdeI	CACNNNGTG	1 cut(s)	541
AfaI	GTAC	2 cut(s)	782, 842
AfeI	AGCGCT	1 cut(s)	517
AfiI	CCNNNNNNNGG	7 cut(s)	176, 391, 541, 614, 733, 938, 939
AflIII	ACRYGT	2 cut(s)	291, 468
AgsI	TTSAA	4 cut(s)	439, 571, 823, 856
AjnI	CCWGG	2 cut(s)	384, 528
AloI	GAACNNNNNNTCC	4 cut(s)	386, 418, 455, 487
AluBI	AGCT	4 cut(s)	256, 415, 477, 562
AluI	AGCT	4 cut(s)	256, 415, 477, 562
Alw21I	GWGCWC	1 cut(s)	399
Alw26I	GTCTC	3 cut(s)	190, 373, 717
AlwI	GGATC	4 cut(s)	69, 82, 637, 895
Aor51HI	AGCGCT	1 cut(s)	517
AoxI	GGCC	2 cut(s)	531, 749
ApaI	GGGCCC	1 cut(s)	753
ApoI	RAATTY	1 cut(s)	964
ArsI	GACNNNNNNTTYG	2 cut(s)	165, 197
Asp700I	GAANNNNTTC	1 cut(s)	965
Asp718I	GGTACC	1 cut(s)	780
AspLEI	GCGC	8 cut(s)	92, 287, 302, 391, 518, 547, 662, 664
AspS9I	GGNCC	3 cut(s)	532, 749, 750
AsuC2I	CCSGG	3 cut(s)	55, 731, 785
AsuHPI	GGTGA	4 cut(s)	446, 589, 748, 970
BaeGI	GKGCMC	1 cut(s)	753
BamHI	GGATCC	1 cut(s)	74
BanI	GGYRCC	4 cut(s)	284, 299, 388, 780
BanII	GRGCYC	2 cut(s)	594, 753
BbrPI	CACGTG	1 cut(s)	541
BbsI	GAAGAC	1 cut(s)	56
Bbv12I	GWGCWC	1 cut(s)	399
BccI	CCATC	1 cut(s)	217
BceAI	ACGGC	4 cut(s)	185, 295, 347, 592
BciT130I	CCWGG	2 cut(s)	386, 530
BciVI	GTATCC	2 cut(s)	781, 900
BcnI	CCSGG	3 cut(s)	55, 731, 785
BcoDI	GTCTC	3 cut(s)	190, 373, 717
BfoI	RGCGCY	5 cut(s)	288, 303, 392, 519, 548
BfuI	GTATCC	2 cut(s)	781, 900
Bme1390I	CCNGG	5 cut(s)	55, 386, 530, 731, 785
BmgT120I	GGNCC	3 cut(s)	532, 749, 750
BmrFI	CCNGG	5 cut(s)	55, 386, 530, 731, 785
BpiI	GAAGAC	1 cut(s)	56
BpmI	CTGGAG	2 cut(s)	540, 584
BpuMI	CCSGG	3 cut(s)	55, 731, 785
BsaAI	YACGTR	2 cut(s)	292, 541
BsaHI	GRCGYC	7 cut(s)	195, 285, 300, 324, 389, 423, 486
BsaI	GGTCTC	1 cut(s)	717
BsaJI	CCNNGG	3 cut(s)	44, 277, 904
BsaWI	WCCGGW	1 cut(s)	706
BsaXI	ACNNNNNCTCC	4 cut(s)	386, 416, 829, 859
Bsc4I	CCNNNNNNNGG	7 cut(s)	176, 391, 541, 614, 733, 938, 939
Bse118I	RCCGGY	1 cut(s)	492
Bse1I	ACTGG	1 cut(s)	689
Bse3DI	GCAATG	2 cut(s)	29, 102
BseBI	CCWGG	2 cut(s)	386, 530
BseDI	CCNNGG	3 cut(s)	44, 277, 904
BseGI	GGATG	3 cut(s)	209, 273, 948
BseLI	CCNNNNNNNGG	7 cut(s)	176, 391, 541, 614, 733, 938, 939
BseMI	GCAATG	2 cut(s)	29, 102
BseNI	ACTGG	1 cut(s)	689
BsePI	GCGCGC	1 cut(s)	660
BseRI	GAGGAG	2 cut(s)	638, 850
BseSI	GKGCMC	1 cut(s)	753
BseYI	CCCAGC	3 cut(s)	411, 547, 664
Bsh1236I	CGCG	4 cut(s)	90, 420, 470, 662
BshFI	GGCC	2 cut(s)	533, 751
BshNI	GGYRCC	4 cut(s)	284, 299, 388, 780
BsiHKAI	GWGCWC	1 cut(s)	399
BsiSI	CCGG	7 cut(s)	55, 392, 493, 555, 707, 731, 785
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	7 cut(s)	176, 391, 541, 614, 733, 938, 939
BsmAI	GTCTC	3 cut(s)	190, 373, 717
BsmBI	CGTCTC	2 cut(s)	190, 373
BsmFI	GGGAC	1 cut(s)	476
BsmI	GAATGC	1 cut(s)	901
BsnI	GGCC	2 cut(s)	533, 751
Bso31I	GGTCTC	1 cut(s)	717
Bsp120I	GGGCCC	1 cut(s)	749
Bsp1286I	GDGCHC	3 cut(s)	399, 594, 753
Bsp143I	GATC	4 cut(s)	74, 451, 642, 900
Bsp19I	CCATGG	2 cut(s)	44, 904
BspANI	GGCC	2 cut(s)	533, 751
BspFNI	CGCG	4 cut(s)	90, 420, 470, 662
BspPI	GGATC	4 cut(s)	69, 82, 637, 895
BspT107I	GGYRCC	4 cut(s)	284, 299, 388, 780
BspTNI	GGTCTC	1 cut(s)	717
BsrDI	GCAATG	2 cut(s)	29, 102
BsrFI	RCCGGY	1 cut(s)	492
BsrI	ACTGG	1 cut(s)	689
BssAI	RCCGGY	1 cut(s)	492
BssECI	CCNNGG	3 cut(s)	44, 277, 904
BssHII	GCGCGC	1 cut(s)	660
BssMI	GATC	4 cut(s)	74, 451, 642, 900
BssNI	GRCGYC	7 cut(s)	195, 285, 300, 324, 389, 423, 486
BssT1I	CCWWGG	2 cut(s)	44, 904
Bst2UI	CCWGG	2 cut(s)	386, 530
Bst4CI	ACNGT	3 cut(s)	13, 179, 845
Bst6I	CTCTTC	3 cut(s)	143, 854, 948
BstACI	GRCGYC	7 cut(s)	195, 285, 300, 324, 389, 423, 486
BstBAI	YACGTR	2 cut(s)	292, 541
BstC8I	GCNNGC	2 cut(s)	662, 696
BstDSI	CCRYGG	3 cut(s)	44, 277, 904
BstF5I	GGATG	3 cut(s)	209, 273, 948
BstFNI	CGCG	4 cut(s)	90, 420, 470, 662
BstH2I	RGCGCY	5 cut(s)	288, 303, 392, 519, 548
BstHHI	GCGC	8 cut(s)	92, 287, 302, 391, 518, 547, 662, 664
BstKTI	GATC	4 cut(s)	77, 454, 645, 903
BstMAI	GTCTC	3 cut(s)	190, 373, 717
BstMBI	GATC	4 cut(s)	74, 451, 642, 900
BstMWI	GCNNNNNNNGC	2 cut(s)	345, 551
BstNI	CCWGG	2 cut(s)	386, 530
BstSCI	CCNGG	5 cut(s)	53, 384, 528, 729, 783
BstSLI	GKGCMC	1 cut(s)	753
BstUI	CGCG	4 cut(s)	90, 420, 470, 662
BstV2I	GAAGAC	1 cut(s)	56
BstX2I	RGATCY	2 cut(s)	74, 642
BstXI	CCANNNNNNTGG	1 cut(s)	760
BstYI	RGATCY	2 cut(s)	74, 642
BsuI	GTATCC	2 cut(s)	781, 900
BsuRI	GGCC	2 cut(s)	533, 751
BtgI	CCRYGG	3 cut(s)	44, 277, 904
BtsCI	GGATG	3 cut(s)	209, 273, 948
BtsIMutI	CAGTG	1 cut(s)	929
Cac8I	GCNNGC	2 cut(s)	662, 696
CfoI	GCGC	8 cut(s)	92, 287, 302, 391, 518, 547, 662, 664
Cfr10I	RCCGGY	1 cut(s)	492
Cfr13I	GGNCC	3 cut(s)	532, 749, 750
CseI	GACGC	4 cut(s)	203, 332, 431, 476
Csp6I	GTAC	2 cut(s)	781, 841
CviAII	CATG	6 cut(s)	45, 64, 109, 905, 970, 985
CviQI	GTAC	2 cut(s)	781, 841
DinI	GGCGCC	3 cut(s)	286, 301, 390
DpnI	GATC	4 cut(s)	76, 453, 644, 902
DpnII	GATC	4 cut(s)	74, 451, 642, 900
DraIII	CACNNNGTG	1 cut(s)	541
DrdI	GACNNNNNNGTC	1 cut(s)	200
DseDI	GACNNNNNNGTC	1 cut(s)	200
Eam1104I	CTCTTC	3 cut(s)	143, 854, 948
EarI	CTCTTC	3 cut(s)	143, 854, 948
EciI	GGCGGA	4 cut(s)	218, 238, 346, 633
Eco130I	CCWWGG	2 cut(s)	44, 904
Eco24I	GRGCYC	2 cut(s)	594, 753
Eco31I	GGTCTC	1 cut(s)	717
Eco47III	AGCGCT	1 cut(s)	517
Eco72I	CACGTG	1 cut(s)	541
EcoO109I	RGGNCCY	1 cut(s)	749
EcoRII	CCWGG	2 cut(s)	384, 528
EcoT14I	CCWWGG	2 cut(s)	44, 904
EcoT38I	GRGCYC	2 cut(s)	594, 753
EgeI	GGCGCC	3 cut(s)	286, 301, 390
EheI	GGCGCC	3 cut(s)	286, 301, 390
ErhI	CCWWGG	2 cut(s)	44, 904
Esp3I	CGTCTC	2 cut(s)	190, 373
FaeI	CATG	6 cut(s)	48, 67, 112, 908, 973, 988
FaiI	YATR	9 cut(s)	46, 65, 110, 906, 914, 939, 950, 971, 986
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	6 cut(s)	44, 63, 108, 904, 969, 984
FauI	CCCGC	4 cut(s)	221, 353, 499, 687
FblI	GTMKAC	2 cut(s)	5, 204
FokI	GGATG	3 cut(s)	196, 260, 955
FriOI	GRGCYC	2 cut(s)	594, 753
GlaI	GCGC	8 cut(s)	91, 286, 301, 390, 517, 546, 661, 663
GsaI	CCCAGC	3 cut(s)	415, 551, 668
GsuI	CTGGAG	2 cut(s)	540, 584
HaeII	RGCGCY	5 cut(s)	288, 303, 392, 519, 548
HaeIII	GGCC	2 cut(s)	533, 751
HapII	CCGG	7 cut(s)	55, 392, 493, 555, 707, 731, 785
HgaI	GACGC	4 cut(s)	203, 332, 431, 476
HhaI	GCGC	8 cut(s)	92, 287, 302, 391, 518, 547, 662, 664
Hin1I	GRCGYC	7 cut(s)	195, 285, 300, 324, 389, 423, 486
Hin1II	CATG	6 cut(s)	48, 67, 112, 908, 973, 988
Hin6I	GCGC	8 cut(s)	90, 285, 300, 389, 516, 545, 660, 662
HinP1I	GCGC	8 cut(s)	90, 285, 300, 389, 516, 545, 660, 662
HincII	GTYRAC	2 cut(s)	205, 376
HindII	GTYRAC	2 cut(s)	205, 376
HinfI	GANTC	6 cut(s)	25, 308, 601, 635, 674, 815
HpaII	CCGG	7 cut(s)	55, 392, 493, 555, 707, 731, 785
HphI	GGTGA	4 cut(s)	446, 589, 748, 970
Hpy166II	GTNNAC	4 cut(s)	6, 205, 376, 763
Hpy188I	TCNGA	6 cut(s)	74, 322, 640, 647, 718, 894
Hpy188III	TCNNGA	1 cut(s)	130
Hpy8I	GTNNAC	4 cut(s)	6, 205, 376, 763
Hpy99I	CGWCG	7 cut(s)	197, 206, 326, 368, 425, 452, 470
HpyAV	CCTTC	6 cut(s)	88, 199, 322, 568, 817, 865
HpyCH4III	ACNGT	3 cut(s)	13, 179, 845
HpyCH4IV	ACGT	4 cut(s)	219, 291, 486, 540
HpyCH4V	TGCA	2 cut(s)	34, 973
HpyF10VI	GCNNNNNNNGC	2 cut(s)	345, 551
HpySE526I	ACGT	4 cut(s)	219, 291, 486, 540
Hsp92I	GRCGYC	7 cut(s)	195, 285, 300, 324, 389, 423, 486
Hsp92II	CATG	6 cut(s)	48, 67, 112, 908, 973, 988
HspAI	GCGC	8 cut(s)	90, 285, 300, 389, 516, 545, 660, 662
KasI	GGCGCC	3 cut(s)	284, 299, 388
KpnI	GGTACC	1 cut(s)	784
Kzo9I	GATC	4 cut(s)	74, 451, 642, 900
LmnI	GCTCC	5 cut(s)	261, 323, 394, 420, 551
MaeII	ACGT	4 cut(s)	219, 291, 486, 540
MalI	GATC	4 cut(s)	76, 453, 644, 902
MboI	GATC	4 cut(s)	74, 451, 642, 900
MflI	RGATCY	2 cut(s)	74, 642
MhlI	GDGCHC	3 cut(s)	399, 594, 753
MluCI	AATT	1 cut(s)	964
MluI	ACGCGT	1 cut(s)	468
Mly113I	GGCGCC	3 cut(s)	285, 300, 389
MlyI	GAGTC	2 cut(s)	302, 668
MmeI	TCCRAC	4 cut(s)	345, 651, 696, 792
MroXI	GAANNNNTTC	1 cut(s)	965
MspA1I	CMGCKG	1 cut(s)	477
MspI	CCGG	7 cut(s)	55, 392, 493, 555, 707, 731, 785
MspR9I	CCNGG	5 cut(s)	55, 386, 530, 731, 785
Mva1269I	GAATGC	1 cut(s)	901
MvaI	CCWGG	2 cut(s)	386, 530
MvnI	CGCG	4 cut(s)	90, 420, 470, 662
MwoI	GCNNNNNNNGC	2 cut(s)	345, 551
NarI	GGCGCC	3 cut(s)	285, 300, 389
NciI	CCSGG	3 cut(s)	55, 731, 785
NcoI	CCATGG	2 cut(s)	44, 904
NdeII	GATC	4 cut(s)	74, 451, 642, 900
NlaIII	CATG	6 cut(s)	48, 67, 112, 908, 973, 988
PauI	GCGCGC	1 cut(s)	660
PcsI	WCGNNNNNNNCGW	5 cut(s)	189, 198, 201, 303, 605
PctI	GAATGC	1 cut(s)	901
PdmI	GAANNNNTTC	1 cut(s)	965
PfeI	GAWTC	4 cut(s)	25, 601, 635, 815
PflMI	CCANNNNNTGG	1 cut(s)	541
PleI	GAGTC	2 cut(s)	302, 668
PluTI	GGCGCC	3 cut(s)	288, 303, 392
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
PpsI	GAGTC	2 cut(s)	302, 668
Ppu21I	YACGTR	2 cut(s)	292, 541
Psp6I	CCWGG	2 cut(s)	384, 528
PspCI	CACGTG	1 cut(s)	541
PspFI	CCCAGC	3 cut(s)	411, 547, 664
PspGI	CCWGG	2 cut(s)	384, 528
PspOMI	GGGCCC	1 cut(s)	749
PspPI	GGNCC	3 cut(s)	532, 749, 750
PsuI	RGATCY	2 cut(s)	74, 642
PteI	GCGCGC	1 cut(s)	660
PvuII	CAGCTG	1 cut(s)	477
RsaI	GTAC	2 cut(s)	782, 842
RsaNI	GTAC	2 cut(s)	781, 841
SalI	GTCGAC	1 cut(s)	203
Sau3AI	GATC	4 cut(s)	74, 451, 642, 900
Sau96I	GGNCC	3 cut(s)	532, 749, 750
SchI	GAGTC	2 cut(s)	302, 668
ScrFI	CCNGG	5 cut(s)	55, 386, 530, 731, 785
SduI	GDGCHC	3 cut(s)	399, 594, 753
SfoI	GGCGCC	3 cut(s)	286, 301, 390
Sse9I	AATT	1 cut(s)	964
SspDI	GGCGCC	3 cut(s)	284, 299, 388
StyD4I	CCNGG	5 cut(s)	53, 384, 528, 729, 783
StyI	CCWWGG	2 cut(s)	44, 904
TaaI	ACNGT	3 cut(s)	13, 179, 845
TaiI	ACGT	4 cut(s)	222, 294, 489, 543
TaqI	TCGA	6 cut(s)	141, 192, 204, 429, 447, 599
TasI	AATT	1 cut(s)	964
TfiI	GAWTC	4 cut(s)	25, 601, 635, 815
TscAI	CASTG	1 cut(s)	929
TspDTI	ATGAA	2 cut(s)	262, 958
TspGWI	ACGGA	2 cut(s)	361, 695
TspRI	CASTG	1 cut(s)	929
Van91I	CCANNNNNTGG	1 cut(s)	541
XapI	RAATTY	1 cut(s)	964
XmiI	GTMKAC	2 cut(s)	5, 204
XmnI	GAANNNNTTC	1 cut(s)	965
ZraI	GACGTC	1 cut(s)	487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.