Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0006832

Physical Location & Seq

Genomic Coordinates Reverse (-)

2695867 .. 2696588

Gene Structure 722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1033700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGCCACTGCTTCATCAAATGAATGATGCAAATGACTTGAAGATGAGACAGGGGATGGGTGTTAAGCCAGGGGTTTTTCAGCAACATATATCCGCAGGCCAGCATGCTTATCCGCATCAGCAGTTGAAATTAGGATCTCCATTTCCTATTCCATCATCAAACCAACTCATTCAGGCTGCATCTTGTCAAATTTCGCAACATTCTTCTCCCCAAGTTGACCACAAGAATCTACTGACTCACCTGAAAGCTGGAACACCATTGCAAACTGCCGGTTCACCTGTTGTCATCCCATCTCCTTCAACTCCCATGGTTCCATCCCCCATGCCAGGGGATTCTGAGAAACCTTCCTCACTACCAAATGCTGGGAATATCGGACATCAACAAGCAGCTGGGGTGGGAGCACCAGTCCAGTCCCTTGCAATTGGCACTAGTGGGATGTTGGCATCTCCTTTGCTTGCTGAATTTATTGTACCAGATGCTAGTCATTTTAATGCTTTGTCAACTATTTCTAGCAAATCGAGTGTTACCGAGCAGCCTCTTGAACGCGGTGAAATCGATGTCACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIX_2

Protein Analysis

189

Amino Acids

19.63

Weight (kDa)

6.48

Isoelectric Point (pI)

61.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006832)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15780 AT1G15780 AT1G15780
fragaria_vesca	FvH4_3g42370 FvH4_3g42370 FvH4_3g42370 FvH4_3g42370
malus_domestica	MD03G1032700.v1.1 MD03G1032900.v1.1 MD03G1033400.v1.1 MD03G1033700.v1.1 MD11G1036600.v1.1
prunus_persica	Prupe.6G027500_v2.0.a1 Prupe.6G027500_v2.0.a1 Prupe.6G027500_v2.0.a1
pyrus_communis	pycom11g03020
rosa_chinensis	RchiOBHm_Chr5g0075871
rosa_laevigata	RLG00000036598
rosa_multiflora	Rmu_sc0002652.1_g000022
rosa_roxburghii	Rroxscaffold_1G00005810
rosa_rugosa	Rorug05G0443000
rosa_samantha	Rh5AG500000 Rh5BG521200 Rh5CG545300 Rh5DG533900
rosa_wichuraiana	Rw5G046410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	362
AccII	CGCG	1 cut(s)	546
AciI	CCGC	3 cut(s)	93, 113, 546
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	189, 461
AfaI	GTAC	1 cut(s)	471
AfiI	CCNNNNNNNGG	3 cut(s)	326, 327, 362
AgsI	TTSAA	4 cut(s)	40, 127, 300, 542
AhlI	ACTAGT	1 cut(s)	428
AjnI	CCWGG	2 cut(s)	67, 325
AluBI	AGCT	2 cut(s)	248, 389
AluI	AGCT	2 cut(s)	248, 389
Alw21I	GWGCWC	1 cut(s)	403
Alw26I	GTCTC	1 cut(s)	40
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	97
ApeKI	GCWGC	3 cut(s)	176, 386, 532
ApoI	RAATTY	2 cut(s)	189, 461
AsuHPI	GGTGA	4 cut(s)	230, 267, 553, 560
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	3 cut(s)	163, 398, 544
BccI	CCATC	4 cut(s)	49, 160, 298, 322
BciT130I	CCWGG	2 cut(s)	69, 327
BcoDI	GTCTC	1 cut(s)	40
BcuI	ACTAGT	1 cut(s)	428
BfaI	CTAG	3 cut(s)	429, 480, 510
BisI	GCNGC	3 cut(s)	177, 387, 533
BlsI	GCNGC	3 cut(s)	178, 388, 534
Bme1390I	CCNGG	2 cut(s)	69, 327
BmiI	GGNNCC	1 cut(s)	312
BmrFI	CCNGG	2 cut(s)	69, 327
BmsI	GCATC	5 cut(s)	16, 124, 188, 452, 466
Bsa29I	ATCGAT	1 cut(s)	555
BsaJI	CCNNGG	3 cut(s)	68, 306, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	390, 420
Bsc4I	CCNNNNNNNGG	3 cut(s)	326, 327, 362
Bse118I	RCCGGY	1 cut(s)	269
Bse1I	ACTGG	2 cut(s)	404, 409
Bse3DI	GCAATG	1 cut(s)	257
BseBI	CCWGG	2 cut(s)	69, 327
BseCI	ATCGAT	1 cut(s)	555
BseDI	CCNNGG	3 cut(s)	68, 306, 326
BseGI	GGATG	4 cut(s)	60, 285, 314, 441
BseLI	CCNNNNNNNGG	3 cut(s)	326, 327, 362
BseMI	GCAATG	1 cut(s)	257
BseMII	CTCAG	1 cut(s)	327
BseNI	ACTGG	2 cut(s)	404, 409
BseXI	GCAGC	3 cut(s)	163, 398, 544
BseYI	CCCAGC	2 cut(s)	362, 389
Bsh1236I	CGCG	1 cut(s)	546
BshFI	GGCC	1 cut(s)	99
BshVI	ATCGAT	1 cut(s)	555
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	270
BslFI	GGGAC	1 cut(s)	397
BslI	CCNNNNNNNGG	3 cut(s)	326, 327, 362
BsmAI	GTCTC	1 cut(s)	40
BsmFI	GGGAC	1 cut(s)	397
BsnI	GGCC	1 cut(s)	99
Bsp1286I	GDGCHC	1 cut(s)	403
Bsp143I	GATC	1 cut(s)	134
Bsp19I	CCATGG	1 cut(s)	306
BspACI	CCGC	3 cut(s)	93, 113, 546
BspANI	GGCC	1 cut(s)	99
BspCNI	CTCAG	1 cut(s)	328
BspDI	ATCGAT	1 cut(s)	555
BspFNI	CGCG	1 cut(s)	546
BspLI	GGNNCC	1 cut(s)	312
BspPI	GGATC	1 cut(s)	142
BsrDI	GCAATG	1 cut(s)	257
BsrFI	RCCGGY	1 cut(s)	269
BsrI	ACTGG	2 cut(s)	404, 409
BssAI	RCCGGY	1 cut(s)	269
BssECI	CCNNGG	3 cut(s)	68, 306, 326
BssMI	GATC	1 cut(s)	134
BssT1I	CCWWGG	1 cut(s)	306
Bst2UI	CCWGG	2 cut(s)	69, 327
BstC8I	GCNNGC	4 cut(s)	97, 101, 105, 456
BstDEI	CTNAG	1 cut(s)	336
BstDSI	CCRYGG	1 cut(s)	306
BstF5I	GGATG	4 cut(s)	60, 285, 314, 441
BstFNI	CGCG	1 cut(s)	546
BstKTI	GATC	1 cut(s)	137
BstMAI	GTCTC	1 cut(s)	40
BstMBI	GATC	1 cut(s)	134
BstNI	CCWGG	2 cut(s)	69, 327
BstNSI	RCATGY	1 cut(s)	107
BstSCI	CCNGG	2 cut(s)	67, 325
BstUI	CGCG	1 cut(s)	546
BstV1I	GCAGC	3 cut(s)	163, 398, 544
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
Bsu15I	ATCGAT	1 cut(s)	555
BsuRI	GGCC	1 cut(s)	99
BsuTUI	ATCGAT	1 cut(s)	555
BtgI	CCRYGG	1 cut(s)	306
BtsCI	GGATG	4 cut(s)	60, 285, 314, 441
BtsI	GCAGTG	1 cut(s)	5
BtsIMutI	CAGTG	1 cut(s)	5
Cac8I	GCNNGC	4 cut(s)	97, 101, 105, 456
Cfr10I	RCCGGY	1 cut(s)	269
ClaI	ATCGAT	1 cut(s)	555
Csp6I	GTAC	1 cut(s)	470
CviAII	CATG	3 cut(s)	104, 307, 322
CviJI	RGCY	6 cut(s)	67, 99, 176, 248, 389, 535
CviKI_1	RGCY	6 cut(s)	67, 99, 176, 248, 389, 535
CviQI	GTAC	1 cut(s)	470
DdeI	CTNAG	1 cut(s)	336
DpnI	GATC	1 cut(s)	136
DpnII	GATC	1 cut(s)	134
Eco130I	CCWWGG	1 cut(s)	306
EcoRII	CCWGG	2 cut(s)	67, 325
EcoT14I	CCWWGG	1 cut(s)	306
ErhI	CCWWGG	1 cut(s)	306
FaeI	CATG	3 cut(s)	107, 310, 325
FaiI	YATR	5 cut(s)	87, 89, 105, 308, 323
FaqI	GGGAC	1 cut(s)	397
FatI	CATG	3 cut(s)	103, 306, 321
Fnu4HI	GCNGC	3 cut(s)	177, 387, 533
FokI	GGATG	4 cut(s)	67, 272, 301, 448
Fsp4HI	GCNGC	3 cut(s)	177, 387, 533
FspBI	CTAG	3 cut(s)	429, 480, 510
GluI	GCNGC	3 cut(s)	177, 387, 533
GsaI	CCCAGC	2 cut(s)	366, 393
HaeIII	GGCC	1 cut(s)	99
HapII	CCGG	1 cut(s)	270
Hin1II	CATG	3 cut(s)	107, 310, 325
HincII	GTYRAC	2 cut(s)	217, 501
HindII	GTYRAC	2 cut(s)	217, 501
HinfI	GANTC	3 cut(s)	226, 235, 332
HpaII	CCGG	1 cut(s)	270
HphI	GGTGA	4 cut(s)	230, 267, 553, 560
Hpy166II	GTNNAC	3 cut(s)	217, 275, 501
Hpy188I	TCNGA	2 cut(s)	337, 374
Hpy188III	TCNNGA	1 cut(s)	539
Hpy8I	GTNNAC	3 cut(s)	217, 275, 501
HpyAV	CCTTC	2 cut(s)	306, 354
HpyCH4V	TGCA	4 cut(s)	29, 179, 262, 419
HpyF3I	CTNAG	1 cut(s)	336
Hsp92II	CATG	3 cut(s)	107, 310, 325
Kzo9I	GATC	1 cut(s)	134
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	3 cut(s)	163, 398, 544
LweI	GCATC	5 cut(s)	16, 124, 188, 452, 466
MaeI	CTAG	3 cut(s)	429, 480, 510
MaeIII	GTNAC	2 cut(s)	523, 559
MalI	GATC	1 cut(s)	136
MboI	GATC	1 cut(s)	134
MboII	GAAGA	2 cut(s)	52, 195
MfeI	CAATTG	1 cut(s)	420
MflI	RGATCY	1 cut(s)	134
MhlI	GDGCHC	1 cut(s)	403
MluCI	AATT	4 cut(s)	128, 189, 420, 461
MlyI	GAGTC	1 cut(s)	229
MnlI	CCTC	2 cut(s)	358, 546
MseI	TTAA	2 cut(s)	63, 489
MslI	CAYNNNNRTG	1 cut(s)	489
MspA1I	CMGCKG	1 cut(s)	389
MspI	CCGG	1 cut(s)	270
MspR9I	CCNGG	2 cut(s)	69, 327
MunI	CAATTG	1 cut(s)	420
MvaI	CCWGG	2 cut(s)	69, 327
MvnI	CGCG	1 cut(s)	546
NcoI	CCATGG	1 cut(s)	306
NdeII	GATC	1 cut(s)	134
NlaIII	CATG	3 cut(s)	107, 310, 325
NlaIV	GGNNCC	1 cut(s)	312
NmuCI	GTSAC	1 cut(s)	559
NspI	RCATGY	1 cut(s)	107
PaeI	GCATGC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	226, 332
PflMI	CCANNNNNTGG	1 cut(s)	362
PkrI	GCNGC	3 cut(s)	178, 388, 534
PleI	GAGTC	1 cut(s)	229
PpsI	GAGTC	1 cut(s)	229
Psp6I	CCWGG	2 cut(s)	67, 325
PspFI	CCCAGC	2 cut(s)	362, 389
PspGI	CCWGG	2 cut(s)	67, 325
PspN4I	GGNNCC	1 cut(s)	312
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	389
RsaI	GTAC	1 cut(s)	471
RsaNI	GTAC	1 cut(s)	470
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	2 cut(s)	63, 489
SatI	GCNGC	3 cut(s)	177, 387, 533
Sau3AI	GATC	1 cut(s)	134
SchI	GAGTC	1 cut(s)	229
ScrFI	CCNGG	2 cut(s)	69, 327
SduI	GDGCHC	1 cut(s)	403
SetI	ASST	6 cut(s)	243, 250, 280, 346, 391, 566
SfaNI	GCATC	5 cut(s)	16, 124, 188, 452, 466
SmiMI	CAYNNNNRTG	1 cut(s)	489
SpeI	ACTAGT	1 cut(s)	428
SphI	GCATGC	1 cut(s)	107
Sse9I	AATT	4 cut(s)	128, 189, 420, 461
SsiI	CCGC	3 cut(s)	93, 113, 546
SspMI	CTAG	3 cut(s)	429, 480, 510
StyD4I	CCNGG	2 cut(s)	67, 325
StyI	CCWWGG	1 cut(s)	306
TaqI	TCGA	2 cut(s)	518, 555
TasI	AATT	4 cut(s)	128, 189, 420, 461
TfiI	GAWTC	2 cut(s)	226, 332
Tru1I	TTAA	2 cut(s)	63, 489
Tru9I	TTAA	2 cut(s)	63, 489
TscAI	CASTG	1 cut(s)	12
TseFI	GTSAC	1 cut(s)	559
TseI	GCWGC	3 cut(s)	176, 386, 532
Tsp45I	GTSAC	1 cut(s)	559
TspDTI	ATGAA	1 cut(s)	35
TspRI	CASTG	1 cut(s)	12
Van91I	CCANNNNNTGG	1 cut(s)	362
XapI	RAATTY	2 cut(s)	189, 461
XceI	RCATGY	1 cut(s)	107
XspI	CTAG	3 cut(s)	429, 480, 510

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.