Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007230

Physical Location & Seq

Genomic Coordinates Forward (+)

5360271 .. 5362579

Gene Structure 2309 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1067000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGGCTTTGGAGGTACTCAGCTGTGCTTGTGTCTCTTGCTTGCCTTCGCTGTAATATCTTCCTCTGCTCGGAACACCATTCTATTTTCAGATGATGAGGTGGTGATAGCCATGGAGATGGAGGGTAGGTCTTTGAGGGTGACGACAAATGACTACAACGACCCAACTGCCAATCGTGGGCATGATCCCTCCCCCGCCTCCTCAAGAGTCAAATCCAAAGGAGGCGGCGGCCGGAAGGGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

81

Amino Acids

8.43

Weight (kDa)

7.82

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07175 AT1G07175 AT2G29995
fragaria_vesca	FvH4_3g38890 FvH4_3g38890 FvH4_3g38891
malus_domestica	MD03G1067000.v1.1 MD11G1071800.v1.1
prunus_persica	Prupe.6G055500_v2.0.a1
pyrus_communis	pycom03g05340 pycom11g05990
rosa_chinensis	RchiOBHm_Chr5g0070101
rosa_roxburghii	Rroxscaffold_1G00011010 Rroxscaffold_1G00011020
rosa_rugosa	Rorug05G0402600 Rorug05G0402700 Rorug05G0402800
rosa_samantha	Rh5AG458900 Rh5AG459000 Rh5BG477600 Rh5CG501200 Rh5CG501300 Rh5DG489500 Rh5DG489600
rosa_wichuraiana	Rw5G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	195, 225, 228
AclWI	GGATC	1 cut(s)	179
AcoI	YGGCCR	1 cut(s)	229
AfaI	GTAC	1 cut(s)	16
AfiI	CCNNNNNNNGG	2 cut(s)	69, 177
AluBI	AGCT	1 cut(s)	22
AluI	AGCT	1 cut(s)	22
Alw26I	GTCTC	1 cut(s)	38
AlwI	GGATC	1 cut(s)	179
AoxI	GGCC	1 cut(s)	229
AsuHPI	GGTGA	2 cut(s)	115, 151
BccI	CCATC	1 cut(s)	112
BcgI	CGANNNNNNTGC	2 cut(s)	149, 183
BcoDI	GTCTC	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	2 cut(s)	226, 229
BlsI	GCNGC	2 cut(s)	227, 230
BpuEI	CTTGAG	1 cut(s)	187
BsaJI	CCNNGG	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	69, 177
BseDI	CCNNGG	1 cut(s)	111
BseLI	CCNNNNNNNGG	2 cut(s)	69, 177
BseMII	CTCAG	1 cut(s)	32
BseRI	GAGGAG	1 cut(s)	190
BseX3I	CGGCCG	1 cut(s)	229
Bsh1285I	CGRYCG	1 cut(s)	232
BshFI	GGCC	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	232
BsiSI	CCGG	1 cut(s)	232
BslI	CCNNNNNNNGG	2 cut(s)	69, 177
BsmAI	GTCTC	1 cut(s)	38
BsnI	GGCC	1 cut(s)	231
Bsp143I	GATC	1 cut(s)	184
Bsp19I	CCATGG	1 cut(s)	111
BspACI	CCGC	3 cut(s)	195, 225, 228
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	179
BssECI	CCNNGG	1 cut(s)	111
BssMI	GATC	1 cut(s)	184
BssT1I	CCWWGG	1 cut(s)	111
BstC8I	GCNNGC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	18
BstDSI	CCRYGG	1 cut(s)	111
BstKTI	GATC	1 cut(s)	187
BstMAI	GTCTC	1 cut(s)	38
BstMBI	GATC	1 cut(s)	184
BstMCI	CGRYCG	1 cut(s)	232
BstMWI	GCNNNNNNNGC	1 cut(s)	237
BstXI	CCANNNNNNTGG	1 cut(s)	118
BstZI	CGGCCG	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	231
BtgI	CCRYGG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	42
Csp6I	GTAC	1 cut(s)	15
CviAII	CATG	2 cut(s)	112, 182
CviJI	RGCY	5 cut(s)	6, 22, 110, 231, 240
CviKI_1	RGCY	5 cut(s)	6, 22, 110, 231, 240
CviQI	GTAC	1 cut(s)	15
DdeI	CTNAG	1 cut(s)	18
DpnI	GATC	1 cut(s)	186
DpnII	GATC	1 cut(s)	184
EaeI	YGGCCR	1 cut(s)	229
EagI	CGGCCG	1 cut(s)	229
EclXI	CGGCCG	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	111
Eco52I	CGGCCG	1 cut(s)	229
EcoT14I	CCWWGG	1 cut(s)	111
ErhI	CCWWGG	1 cut(s)	111
FaeI	CATG	2 cut(s)	115, 185
FaiI	YATR	2 cut(s)	113, 183
FatI	CATG	2 cut(s)	111, 181
FauI	CCCGC	1 cut(s)	202
Fnu4HI	GCNGC	2 cut(s)	226, 229
Fsp4HI	GCNGC	2 cut(s)	226, 229
GluI	GCNGC	2 cut(s)	226, 229
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	232
Hin1II	CATG	2 cut(s)	115, 185
HinfI	GANTC	1 cut(s)	207
HpaII	CCGG	1 cut(s)	232
HphI	GGTGA	2 cut(s)	115, 151
Hpy188I	TCNGA	2 cut(s)	72, 91
Hpy188III	TCNNGA	1 cut(s)	204
HpyAV	CCTTC	2 cut(s)	55, 229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	237
HpyF3I	CTNAG	1 cut(s)	18
Hsp92II	CATG	2 cut(s)	115, 185
Kzo9I	GATC	1 cut(s)	184
MaeIII	GTNAC	1 cut(s)	139
MalI	GATC	1 cut(s)	186
MboI	GATC	1 cut(s)	184
MboII	GAAGA	1 cut(s)	51
MlyI	GAGTC	1 cut(s)	216
MnlI	CCTC	9 cut(s)	5, 73, 91, 115, 129, 199, 208, 211, 215
MslI	CAYNNNNRTG	1 cut(s)	116
MspA1I	CMGCKG	1 cut(s)	22
MspI	CCGG	1 cut(s)	232
MwoI	GCNNNNNNNGC	1 cut(s)	237
NcoI	CCATGG	1 cut(s)	111
NdeII	GATC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	115, 185
NmuCI	GTSAC	1 cut(s)	139
PkrI	GCNGC	2 cut(s)	227, 230
PleI	GAGTC	1 cut(s)	215
PpsI	GAGTC	1 cut(s)	215
PvuII	CAGCTG	1 cut(s)	22
RsaI	GTAC	1 cut(s)	16
RsaNI	GTAC	1 cut(s)	15
RseI	CAYNNNNRTG	1 cut(s)	116
SatI	GCNGC	2 cut(s)	226, 229
Sau3AI	GATC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	216
SetI	ASST	4 cut(s)	16, 24, 102, 131
SgeI	CNNG	9 cut(s)	40, 49, 53, 81, 124, 188, 194, 206, 216
SmiMI	CAYNNNNRTG	1 cut(s)	116
SmlI	CTYRAG	1 cut(s)	202
SmoI	CTYRAG	1 cut(s)	202
SsiI	CCGC	3 cut(s)	195, 225, 228
StyI	CCWWGG	1 cut(s)	111
TauI	GCSGC	2 cut(s)	228, 231
TseFI	GTSAC	1 cut(s)	139
Tsp45I	GTSAC	1 cut(s)	139

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.