Rh5AG458900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007230
Physical Location & Seq
Reverse (-)
78699416 .. 78701289
1874 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG458900.1

Sequence Viewer

Length: 429 bp
ATGTCGACGAACGTGAGAGCCATGAATATTTGTTCAAATTACTTTGTACGTAATTGCTATCGTCAACTCCTAATTCTAAACCTGCCATATAGTCATATTATTAATTCTCGATTATATTATATTAGGCCTTATATATATGTTTCTCATGTAGGAAGAGAGAGTGAAAAAACAAAGGGAATGAAAATGGGATTTGGAGGTATACGGCTGTGCTTGTCTCTCTTGCTGGCTTTTGCTGTAGTCTCTTCTGCTTCCAGGAACACCATCGATCCATTTTCAGTTTCAGATAACGACGAAATGGTAATGACGATGGAGGGGAGGTCTTTGATGGCGAGACTAGACGACTACGGTGACACGACTGCGAATCGTGGGCATGATCCACCATCCGCCTCCAAGGCCAAACCCGGCAAACTCCGTGGCCGAAAGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.95

Weight (kDa)

9.75

Isoelectric Point (pI)

37.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 90
AccI GTMKAC 2 cut(s) 5, 199
AciI CCGC 1 cut(s) 384
AclWI GGATC 2 cut(s) 260, 368
AcoI YGGCCR 1 cut(s) 415
AfaI GTAC 1 cut(s) 48
AgsI TTSAA 1 cut(s) 36
AjnI CCWGG 1 cut(s) 251
Alw26I GTCTC 3 cut(s) 219, 244, 325
AlwI GGATC 2 cut(s) 260, 368
AoxI GGCC 3 cut(s) 125, 393, 415
AseI ATTAAT 1 cut(s) 102
AsuC2I CCSGG 1 cut(s) 402
AsuHPI GGTGA 1 cut(s) 359
BccI CCATC 4 cut(s) 269, 301, 319, 388
BceAI ACGGC 1 cut(s) 218
BciT130I CCWGG 1 cut(s) 253
BcnI CCSGG 1 cut(s) 402
BcoDI GTCTC 3 cut(s) 219, 244, 325
BfaI CTAG 2 cut(s) 335, 427
BfmI CTRYAG 1 cut(s) 234
BfuAI ACCTGC 1 cut(s) 90
BglI GCCNNNNNGGC 2 cut(s) 392, 423
Bme1390I CCNGG 2 cut(s) 253, 402
BmrFI CCNGG 2 cut(s) 253, 402
BpuMI CCSGG 1 cut(s) 402
Bsa29I ATCGAT 1 cut(s) 264
BsaAI YACGTR 1 cut(s) 50
BsaJI CCNNGG 2 cut(s) 390, 412
BsaXI ACNNNNNCTCC 2 cut(s) 302, 332
BseBI CCWGG 1 cut(s) 253
BseCI ATCGAT 1 cut(s) 264
BseDI CCNNGG 2 cut(s) 390, 412
BseGI GGATG 1 cut(s) 380
BshFI GGCC 3 cut(s) 127, 395, 417
BshVI ATCGAT 1 cut(s) 264
BsiSI CCGG 1 cut(s) 402
BsmAI GTCTC 3 cut(s) 219, 244, 325
BsnI GGCC 3 cut(s) 127, 395, 417
Bsp143I GATC 2 cut(s) 265, 373
BspACI CCGC 1 cut(s) 384
BspANI GGCC 3 cut(s) 127, 395, 417
BspDI ATCGAT 1 cut(s) 264
BspMI ACCTGC 1 cut(s) 90
BspPI GGATC 2 cut(s) 260, 368
BssECI CCNNGG 2 cut(s) 390, 412
BssMI GATC 2 cut(s) 265, 373
BssNAI GTATAC 1 cut(s) 200
BssT1I CCWWGG 1 cut(s) 390
Bst1107I GTATAC 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 347
Bst6I CTCTTC 2 cut(s) 148, 247
BstBAI YACGTR 1 cut(s) 50
BstC8I GCNNGC 1 cut(s) 225
BstDSI CCRYGG 1 cut(s) 412
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 2 cut(s) 268, 376
BstMAI GTCTC 3 cut(s) 219, 244, 325
BstMBI GATC 2 cut(s) 265, 373
BstMWI GCNNNNNNNGC 2 cut(s) 392, 423
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 2 cut(s) 251, 400
BstSFI CTRYAG 1 cut(s) 234
BstSNI TACGTA 1 cut(s) 50
BstZ17I GTATAC 1 cut(s) 200
Bsu15I ATCGAT 1 cut(s) 264
BsuRI GGCC 3 cut(s) 127, 395, 417
BsuTUI ATCGAT 1 cut(s) 264
BtgI CCRYGG 1 cut(s) 412
BtsCI GGATG 1 cut(s) 380
BveI ACCTGC 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 225
ClaI ATCGAT 1 cut(s) 264
Csp6I GTAC 1 cut(s) 47
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 3 cut(s) 22, 146, 371
CviJI RGCY 7 cut(s) 20, 127, 205, 227, 395, 417, 426
CviKI_1 RGCY 7 cut(s) 20, 127, 205, 227, 395, 417, 426
CviQI GTAC 1 cut(s) 47
DpnI GATC 2 cut(s) 267, 375
DpnII GATC 2 cut(s) 265, 373
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 2 cut(s) 148, 247
EarI CTCTTC 2 cut(s) 148, 247
EciI GGCGGA 1 cut(s) 373
Eco105I TACGTA 1 cut(s) 50
Eco130I CCWWGG 1 cut(s) 390
Eco147I AGGCCT 1 cut(s) 127
EcoRII CCWGG 1 cut(s) 251
EcoT14I CCWWGG 1 cut(s) 390
ErhI CCWWGG 1 cut(s) 390
FaeI CATG 3 cut(s) 25, 149, 374
FatI CATG 3 cut(s) 21, 145, 370
FblI GTMKAC 2 cut(s) 5, 199
FokI GGATG 1 cut(s) 367
FspBI CTAG 2 cut(s) 335, 427
HaeIII GGCC 3 cut(s) 127, 395, 417
HapII CCGG 1 cut(s) 402
Hin1II CATG 3 cut(s) 25, 149, 374
HincII GTYRAC 2 cut(s) 6, 65
HindII GTYRAC 2 cut(s) 6, 65
HinfI GANTC 1 cut(s) 361
HpaII CCGG 1 cut(s) 402
HphI GGTGA 1 cut(s) 359
Hpy166II GTNNAC 3 cut(s) 6, 65, 200
Hpy188I TCNGA 1 cut(s) 283
Hpy188III TCNNGA 1 cut(s) 108
Hpy8I GTNNAC 3 cut(s) 6, 65, 200
Hpy99I CGWCG 2 cut(s) 10, 293
HpyCH4III ACNGT 1 cut(s) 347
HpyCH4IV ACGT 2 cut(s) 12, 49
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 423
HpySE526I ACGT 2 cut(s) 12, 49
Hsp92II CATG 3 cut(s) 25, 149, 374
Kzo9I GATC 2 cut(s) 265, 373
LpnPI CCDG 5 cut(s) 95, 209, 238, 265, 415
MaeI CTAG 2 cut(s) 335, 427
MaeII ACGT 2 cut(s) 12, 49
MaeIII GTNAC 1 cut(s) 347
MalI GATC 2 cut(s) 267, 375
MboI GATC 2 cut(s) 265, 373
MboII GAAGA 2 cut(s) 165, 234
MluCI AATT 4 cut(s) 37, 52, 72, 103
MnlI CCTC 4 cut(s) 188, 304, 309, 397
MseI TTAA 1 cut(s) 102
MspI CCGG 1 cut(s) 402
MspR9I CCNGG 2 cut(s) 253, 402
MvaI CCWGG 1 cut(s) 253
MwoI GCNNNNNNNGC 2 cut(s) 392, 423
NciI CCSGG 1 cut(s) 402
NdeII GATC 2 cut(s) 265, 373
NlaIII CATG 3 cut(s) 25, 149, 374
NmuCI GTSAC 1 cut(s) 347
PceI AGGCCT 1 cut(s) 127
PfeI GAWTC 1 cut(s) 361
PfoI TCCNGGA 1 cut(s) 251
Ppu21I YACGTR 1 cut(s) 50
PshBI ATTAAT 1 cut(s) 102
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
RsaI GTAC 1 cut(s) 48
RsaNI GTAC 1 cut(s) 47
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 102
Sau3AI GATC 2 cut(s) 265, 373
ScrFI CCNGG 2 cut(s) 253, 402
SetI ASST 5 cut(s) 15, 52, 84, 199, 320
SfcI CTRYAG 1 cut(s) 234
SnaBI TACGTA 1 cut(s) 50
Sse9I AATT 4 cut(s) 37, 52, 72, 103
SseBI AGGCCT 1 cut(s) 127
SsiI CCGC 1 cut(s) 384
SspI AATATT 1 cut(s) 28
SspMI CTAG 2 cut(s) 335, 427
StuI AGGCCT 1 cut(s) 127
StyD4I CCNGG 2 cut(s) 251, 400
StyI CCWWGG 1 cut(s) 390
TaaI ACNGT 1 cut(s) 347
TaiI ACGT 2 cut(s) 15, 52
TaqI TCGA 3 cut(s) 5, 109, 264
TasI AATT 4 cut(s) 37, 52, 72, 103
TfiI GAWTC 1 cut(s) 361
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TseFI GTSAC 1 cut(s) 347
Tsp45I GTSAC 1 cut(s) 347
TspDTI ATGAA 2 cut(s) 38, 194
TspGWI ACGGA 1 cut(s) 401
VspI ATTAAT 1 cut(s) 102
XmiI GTMKAC 2 cut(s) 5, 199
XspI CTAG 2 cut(s) 335, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.