Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0007230

Physical Location & Seq

Genomic Coordinates Reverse (-)

55316658 .. 55320342

Gene Structure 3685 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0402700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2409 bp

ATGAATGTACTTGTGAGGCTTTACAACTTGAAAGCCAAGCATGGTATGACTGATGCGGCTTATTCGGACTGGTTGATTGCCTTTTCGGAGTATCTTCCTACTGGAAATGAGATACCTACGTCAGTGTATGAGGCAAAGAAGGTTTTGAGTGCTCTAGGAATGGATTATAGAAAAATCCATGCTTGCCCCAATGACTGTATTCTCTACAGAAAACAGTATGCTGATGAAATTCGATGTCCCCGATGTGGTATCTCAAGGTGGAAAGTTCCATTTTTACTTGGTCCTGAAAACAAGAAAATGGTTTTGGAATCTGCGGCAACAAAGTGGAGAGAATTCAAGTCTCGACTCACTTCAAACTACATTATTCCGTTTTTGAATGACCCCGAAGCCCTGAAATATCCCCCAGATGATTATCCTTTCATTCAGGCAGATCATTGGACTCTATTTGTCCAACAACGGACAACATCGGCATTCTTGGAAAAGCGTAATGTTCAGCAAGAGATTCGCCGAAGGAATAAATATCCTCATAGAATGTCCCGTAAGGGATATGCTGGATTGGAGCAAGAGTTGGCTGAAGAAATGGATGAGGAAGAAATCGATAGGGCCACTTTATGGGTCAGAGGACGACAAACCAAGGATGGTCATTTCAAGGATGACAACACAAAAGAGACTGCTGAAAAAATAGCAAGCTTGAAGAAAAAGGTTGCTGATGGCGAACTGAGCACAAGCGGAACTACTGATGTCTTGACCTTAGCATTGGGGACTCCTGAGCATGCGGGTCGAGTGCGTGGAGTGGGTGGTTACATCAACCCCAATGCTTACTTCCACCTCCCTAAACGAAGAAAGGAGAGCCTAGAAGCAACTGTTAGAGTTAGTGTGCAGAAAATACTAGCAGAGGAGAGAGAGAAGATAGTAGATGAGGCAAGGGAAAAGATAATTGAGGAGGCAAAGGAAAAAATTATTGCTGAAGAGCGAGCTTATTGGTCTGCAAAATTTGCCCACCTTGAGGCAAAGGTAAATGGAAAAGAAAGAGATGGGAACGGTACTGTTGCTCATGGATATGTTTCTGGCCAAGGAAGCTGTTCACGCACAGCCGATGAGATTGCTCAACAACAAGCAAAAATTTCCTTGGAAGCTGAAGAAGGCATGAAATCTGTGGAAGGAACAAGAGTTTTGGAGGCTTTGGAAGTGATTGAAAAAAAAGTTTTGCGTACAAAGAAGGGTTCCAAGAAAGTGGTGAAGAAGATCGAGCAAGAAGAGGGGGCAGAATATGTGGATTTGACATTGCATGAACCCCTAAAGACAAAAAAAGCTGAGATTGACTGCAAGTTGGCAATAGGTTCCATTGACCACATTGTTGCTTATGCCACTGTCATGGAGGGTGATGATCCTTCTAGTACAGTTCATGGTGCACCACTGGGCAATGGTAATATGCGTGTTTCGGTATATGCTGCAGTTGAGGAGAATGTAAAGATCCCATTTCCTGTGAAAGATGAAATTGAAACTGTTAAGCAGGCTATGGGGAGTTGGGTAGCATGGCCTACACACCTAATCATAATGTCACATGTGAAGAAACCTGTCAAGGAAAATGTTGAGAGGAAGAGGAAAAGGAGAGATATAGAGGAAGAAGACTCGGAGTTTCAGTTTAGCTTGGCGTCAATGGCACCTACATTACCAGATTCATTGAAGATGCTATGTATGTGGGGTGAGGATAAATTCAAAGGAGGGCGTACCATCTCCTTTTACATGGAACCTGAAGTCTTTGGATATTCTCGCAAGAGCTTCATAATAGGATCAGATGTTCGACGACTTGCAAGCATGAGAGAAGTCACTGGAAATTGCATTTCTGTGTACCAGAGGTACCTCTATGAGAAATTGACTACATATAAAATGGTGGACATGGTTGCATTTGTTGATCCTTCACATATAGGTGCAGTAGGGTGTGGGAATGGAACTACCAGGGCCCAACATATCAAAGATAGACTTGTAACTGCTAAACCAGGGCAGATGTTCATGTTGCCGTTTAATTCAGGTGATCACTGGATCTTGACAATTATTCATCCGGACGAAGGTACTGCCTATTTTATGGATCCACTGAAAAGACGCTTACCCACTGGAGATTGGATGTCTATTGTGGAAACTGCAATAGGTATGTATAATGTTGCAATGAACAGGAAAGGCGCTCGGAGTTCTACAAAATGGAAAAATTTGGCTGGCATTCCTCCCCAACCTAGCAACAAGGAGTGCGGGTACTTTGTGATGAGATACATGAGGGATATCATTGAGGATAAGGACTTATCATTGTTTGCTACCAAGTGGGAGAGGAGAGGCAATAGCCAATATACGCAAGCAGATATTGATGAGATACGAAATGAGTGGGCGAAGTTTGTCGTGAAGAGCTATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

802

Amino Acids

91.32

Weight (kDa)

8.69

Isoelectric Point (pI)

40.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transposase_24	PF03004	143 - 269	1.4e-12	Plant transposase (Ptta/En/Spm family)
DUF8039	PF26133	439 - 520	1.2e-13	Domain of unknown function (DUF8039)
Peptidase_C48	PF02902	650 - 795	1.7e-10	Ulp1 protease family, C-terminal catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07175 AT1G07175 AT2G29995
fragaria_vesca	FvH4_3g38890 FvH4_3g38890 FvH4_3g38891
malus_domestica	MD03G1067000.v1.1 MD11G1071800.v1.1
prunus_persica	Prupe.6G055500_v2.0.a1
pyrus_communis	pycom03g05340 pycom11g05990
rosa_chinensis	RchiOBHm_Chr5g0070101
rosa_roxburghii	Rroxscaffold_1G00011010 Rroxscaffold_1G00011020
rosa_rugosa	Rorug05G0402600 Rorug05G0402700 Rorug05G0402800
rosa_samantha	Rh5AG458900 Rh5AG459000 Rh5BG477600 Rh5CG501200 Rh5CG501300 Rh5DG489500 Rh5DG489600
rosa_wichuraiana	Rw5G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1860
AccB1I	GGYRCC	2 cut(s)	1663, 1860
AccB7I	CCANNNNNTGG	1 cut(s)	612
AccIII	TCCGGA	1 cut(s)	2062
AciI	CCGC	5 cut(s)	56, 314, 729, 776, 2247
AclWI	GGATC	7 cut(s)	1382, 1468, 1801, 1910, 2051, 2084, 2097
AcoI	YGGCCR	1 cut(s)	1069
AcsI	RAATTY	6 cut(s)	228, 332, 992, 1122, 1715, 2206
AcuI	CTGAAG	4 cut(s)	594, 987, 1158, 1776
AcyI	GRCGYC	1 cut(s)	1655
AfaI	GTAC	9 cut(s)	9, 1045, 1213, 1399, 1732, 1853, 1862, 2074, 2252
AfiI	CCNNNNNNNGG	4 cut(s)	245, 612, 1006, 2069
AflIII	ACRYGT	1 cut(s)	1564
AjnI	CCWGG	2 cut(s)	1958, 1999
AjuI	GAANNNNNNNTTGG	4 cut(s)	287, 319, 806, 838
AloI	GAACNNNNNNTCC	2 cut(s)	1785, 1817
AluBI	AGCT	8 cut(s)	690, 977, 1080, 1136, 1313, 1650, 1782, 2400
AluI	AGCT	8 cut(s)	690, 977, 1080, 1136, 1313, 1650, 1782, 2400
Alw21I	GWGCWC	3 cut(s)	154, 725, 1414
Alw26I	GTCTC	2 cut(s)	345, 662
Alw44I	GTGCAC	1 cut(s)	1410
AlwI	GGATC	7 cut(s)	1382, 1468, 1801, 1910, 2051, 2084, 2097
Aor13HI	TCCGGA	1 cut(s)	2062
AoxI	GGCC	4 cut(s)	603, 1069, 1538, 1962
ApaI	GGGCCC	1 cut(s)	1966
ApaLI	GTGCAC	1 cut(s)	1410
ApeKI	GCWGC	1 cut(s)	1451
ApoI	RAATTY	6 cut(s)	228, 332, 992, 1122, 1715, 2206
Asp700I	GAANNNNTTC	1 cut(s)	1081
Asp718I	GGTACC	1 cut(s)	1860
AspLEI	GCGC	1 cut(s)	2183
AspS9I	GGNCC	4 cut(s)	281, 603, 1962, 1963
AsuHPI	GGTGA	4 cut(s)	1249, 1394, 1718, 2045
AvaII	GGWCC	1 cut(s)	281
BaeGI	GKGCMC	2 cut(s)	1414, 1966
BaeI	ACNNNNGTAYC	2 cut(s)	104, 137
BalI	TGGCCA	1 cut(s)	1071
BamHI	GGATCC	1 cut(s)	2089
BanI	GGYRCC	2 cut(s)	1663, 1860
BanII	GRGCYC	1 cut(s)	1966
BbsI	GAAGAC	1 cut(s)	1635
Bbv12I	GWGCWC	3 cut(s)	154, 725, 1414
BbvI	GCAGC	1 cut(s)	1438
BccI	CCATC	4 cut(s)	632, 704, 1028, 1742
BceAI	ACGGC	1 cut(s)	2005
BcgI	CGANNNNNNTGC	8 cut(s)	485, 519, 761, 795, 1085, 1119, 2057, 2091
BciT130I	CCWGG	2 cut(s)	1960, 2001
BclI	TGATCA	1 cut(s)	2035
BcoDI	GTCTC	2 cut(s)	345, 662
BfaI	CTAG	5 cut(s)	155, 854, 890, 1395, 2232
BfmI	CTRYAG	2 cut(s)	205, 1452
BfoI	RGCGCY	1 cut(s)	2184
BisI	GCNGC	3 cut(s)	57, 315, 1452
BlsI	GCNGC	3 cut(s)	58, 316, 1453
Bme1390I	CCNGG	2 cut(s)	1960, 2001
Bme18I	GGWCC	1 cut(s)	281
BmgT120I	GGNCC	4 cut(s)	281, 603, 1962, 1963
BmiI	GGNNCC	7 cut(s)	1225, 1342, 1665, 1752, 1862, 1964, 2091
BmrFI	CCNGG	2 cut(s)	1960, 2001
BmrI	ACTGGG	1 cut(s)	1427
BmsI	GCATC	2 cut(s)	43, 1680
BmuI	ACTGGG	1 cut(s)	1427
BpiI	GAAGAC	1 cut(s)	1635
BpmI	CTGGAG	1 cut(s)	2136
Bpu10I	CCTNAGC	2 cut(s)	751, 768
BpuEI	CTTGAG	2 cut(s)	238, 1025
Bsa29I	ATCGAT	1 cut(s)	597
BsaBI	GATNNNNATC	1 cut(s)	411
BsaHI	GRCGYC	1 cut(s)	1655
BsaJI	CCNNGG	5 cut(s)	633, 1072, 1128, 1959, 2000
BsaWI	WCCGGW	1 cut(s)	2062
BsaXI	ACNNNNNCTCC	6 cut(s)	551, 581, 1628, 1658, 2234, 2264
Bsc4I	CCNNNNNNNGG	4 cut(s)	245, 612, 1006, 2069
Bse1I	ACTGG	6 cut(s)	74, 106, 1422, 1837, 2045, 2119
Bse3DI	GCAATG	3 cut(s)	1283, 1429, 2172
Bse8I	GATNNNNATC	1 cut(s)	411
BseAI	TCCGGA	1 cut(s)	2062
BseBI	CCWGG	2 cut(s)	1960, 2001
BseCI	ATCGAT	1 cut(s)	597
BseDI	CCNNGG	5 cut(s)	633, 1072, 1128, 1959, 2000
BseGI	GGATG	5 cut(s)	589, 643, 658, 2059, 2130
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	4 cut(s)	245, 612, 1006, 2069
BseMI	GCAATG	3 cut(s)	1283, 1429, 2172
BseMII	CTCAG	3 cut(s)	710, 759, 1305
BseNI	ACTGG	6 cut(s)	74, 106, 1422, 1837, 2045, 2119
BseRI	GAGGAG	4 cut(s)	911, 956, 1475, 2338
BseSI	GKGCMC	2 cut(s)	1414, 1966
BseXI	GCAGC	1 cut(s)	1438
BsgI	GTGCAG	2 cut(s)	899, 1953
BshFI	GGCC	4 cut(s)	605, 1071, 1540, 1964
BshNI	GGYRCC	2 cut(s)	1663, 1860
BshVI	ATCGAT	1 cut(s)	597
BsiHKAI	GWGCWC	3 cut(s)	154, 725, 1414
BsiSI	CCGG	1 cut(s)	2063
BslFI	GGGAC	3 cut(s)	222, 520, 775
BslI	CCNNNNNNNGG	4 cut(s)	245, 612, 1006, 2069
BsmAI	GTCTC	2 cut(s)	345, 662
BsmFI	GGGAC	3 cut(s)	222, 520, 775
BsmI	GAATGC	2 cut(s)	470, 2217
BsnI	GGCC	4 cut(s)	605, 1071, 1540, 1964
Bsp120I	GGGCCC	1 cut(s)	1962
Bsp1286I	GDGCHC	4 cut(s)	154, 725, 1414, 1966
Bsp13I	TCCGGA	1 cut(s)	2062
Bsp143I	GATC	9 cut(s)	430, 1245, 1387, 1473, 1793, 1915, 2035, 2043, 2089
BspACI	CCGC	5 cut(s)	56, 314, 729, 776, 2247
BspANI	GGCC	4 cut(s)	605, 1071, 1540, 1964
BspCNI	CTCAG	3 cut(s)	711, 760, 1306
BspDI	ATCGAT	1 cut(s)	597
BspEI	TCCGGA	1 cut(s)	2062
BspLI	GGNNCC	7 cut(s)	1225, 1342, 1665, 1752, 1862, 1964, 2091
BspMAI	CTGCAG	1 cut(s)	1456
BspPI	GGATC	7 cut(s)	1382, 1468, 1801, 1910, 2051, 2084, 2097
BspQI	GCTCTTC	2 cut(s)	963, 2390
BspT107I	GGYRCC	2 cut(s)	1663, 1860
BsrDI	GCAATG	3 cut(s)	1283, 1429, 2172
BsrI	ACTGG	6 cut(s)	74, 106, 1422, 1837, 2045, 2119
BssECI	CCNNGG	5 cut(s)	633, 1072, 1128, 1959, 2000
BssMI	GATC	9 cut(s)	430, 1245, 1387, 1473, 1793, 1915, 2035, 2043, 2089
BssNI	GRCGYC	1 cut(s)	1655
BssT1I	CCWWGG	3 cut(s)	633, 1072, 1128
Bst2UI	CCWGG	2 cut(s)	1960, 2001
Bst4CI	ACNGT	8 cut(s)	197, 216, 865, 1043, 1048, 1372, 1402, 1507
Bst6I	CTCTTC	4 cut(s)	963, 1251, 1595, 2390
BstACI	GRCGYC	1 cut(s)	1655
BstAPI	GCANNNNNTGC	1 cut(s)	995
BstC8I	GCNNGC	8 cut(s)	184, 688, 774, 975, 1515, 1816, 2215, 2349
BstDEI	CTNAG	4 cut(s)	719, 751, 768, 1314
BstF5I	GGATG	5 cut(s)	589, 643, 658, 2059, 2130
BstH2I	RGCGCY	1 cut(s)	2184
BstHHI	GCGC	1 cut(s)	2183
BstKTI	GATC	9 cut(s)	433, 1248, 1390, 1476, 1796, 1918, 2038, 2046, 2092
BstMAI	GTCTC	2 cut(s)	345, 662
BstMBI	GATC	9 cut(s)	430, 1245, 1387, 1473, 1793, 1915, 2035, 2043, 2089
BstMWI	GCNNNNNNNGC	5 cut(s)	720, 995, 1077, 1086, 1661
BstNI	CCWGG	2 cut(s)	1960, 2001
BstNSI	RCATGY	2 cut(s)	776, 1568
BstSCI	CCNGG	2 cut(s)	1958, 1999
BstSFI	CTRYAG	2 cut(s)	205, 1452
BstSLI	GKGCMC	2 cut(s)	1414, 1966
BstV1I	GCAGC	1 cut(s)	1438
BstV2I	GAAGAC	1 cut(s)	1635
BstX2I	RGATCY	3 cut(s)	1473, 2043, 2089
BstXI	CCANNNNNNTGG	2 cut(s)	1234, 1375
BstYI	RGATCY	3 cut(s)	1473, 2043, 2089
Bsu15I	ATCGAT	1 cut(s)	597
BsuRI	GGCC	4 cut(s)	605, 1071, 1540, 1964
BsuTUI	ATCGAT	1 cut(s)	597
BtsCI	GGATG	5 cut(s)	589, 643, 658, 2059, 2130
BtsIMutI	CAGTG	7 cut(s)	129, 1368, 1415, 1830, 2038, 2093, 2112
Cac8I	GCNNGC	8 cut(s)	184, 688, 774, 975, 1515, 1816, 2215, 2349
CfoI	GCGC	1 cut(s)	2183
Cfr13I	GGNCC	4 cut(s)	281, 603, 1962, 1963
ClaI	ATCGAT	1 cut(s)	597
CseI	GACGC	2 cut(s)	1644, 2112
Csp6I	GTAC	9 cut(s)	8, 1044, 1212, 1398, 1731, 1852, 1861, 2073, 2251
CviQI	GTAC	9 cut(s)	8, 1044, 1212, 1398, 1731, 1852, 1861, 2073, 2251
DdeI	CTNAG	4 cut(s)	719, 751, 768, 1314
DpnI	GATC	9 cut(s)	432, 1247, 1389, 1475, 1795, 1917, 2037, 2045, 2091
DpnII	GATC	9 cut(s)	430, 1245, 1387, 1473, 1793, 1915, 2035, 2043, 2089
EaeI	YGGCCR	1 cut(s)	1069
Eam1104I	CTCTTC	4 cut(s)	963, 1251, 1595, 2390
EarI	CTCTTC	4 cut(s)	963, 1251, 1595, 2390
Eco130I	CCWWGG	3 cut(s)	633, 1072, 1128
Eco24I	GRGCYC	1 cut(s)	1966
Eco32I	GATATC	1 cut(s)	2278
Eco47I	GGWCC	1 cut(s)	281
Eco57I	CTGAAG	4 cut(s)	594, 987, 1158, 1776
EcoO109I	RGGNCCY	1 cut(s)	1962
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	2 cut(s)	1958, 1999
EcoRV	GATATC	1 cut(s)	2278
EcoT14I	CCWWGG	3 cut(s)	633, 1072, 1128
EcoT38I	GRGCYC	1 cut(s)	1966
ErhI	CCWWGG	3 cut(s)	633, 1072, 1128
FalI	AAGNNNNNCTT	2 cut(s)	1968, 2000
FaqI	GGGAC	3 cut(s)	222, 520, 775
FauI	CCCGC	2 cut(s)	769, 2240
FbaI	TGATCA	1 cut(s)	2035
Fnu4HI	GCNGC	3 cut(s)	57, 315, 1452
FokI	GGATG	5 cut(s)	596, 650, 665, 2046, 2137
FriOI	GRGCYC	1 cut(s)	1966
Fsp4HI	GCNGC	3 cut(s)	57, 315, 1452
FspBI	CTAG	5 cut(s)	155, 854, 890, 1395, 2232
GlaI	GCGC	1 cut(s)	2182
GluI	GCNGC	3 cut(s)	57, 315, 1452
GsuI	CTGGAG	1 cut(s)	2136
HaeII	RGCGCY	1 cut(s)	2184
HaeIII	GGCC	4 cut(s)	605, 1071, 1540, 1964
HapII	CCGG	1 cut(s)	2063
HgaI	GACGC	2 cut(s)	1644, 2112
HhaI	GCGC	1 cut(s)	2183
Hin1I	GRCGYC	1 cut(s)	1655
Hin6I	GCGC	1 cut(s)	2181
HinP1I	GCGC	1 cut(s)	2181
HindIII	AAGCTT	1 cut(s)	688
HinfI	GANTC	7 cut(s)	308, 345, 439, 502, 763, 1631, 1679
HpaII	CCGG	1 cut(s)	2063
HphI	GGTGA	4 cut(s)	1249, 1394, 1718, 2045
Hpy166II	GTNNAC	4 cut(s)	1085, 1412, 1852, 1897
Hpy188I	TCNGA	6 cut(s)	67, 88, 620, 1636, 1798, 2187
Hpy188III	TCNNGA	7 cut(s)	284, 342, 745, 767, 2047, 2063, 2392
Hpy8I	GTNNAC	4 cut(s)	1085, 1412, 1852, 1897
Hpy99I	CGWCG	1 cut(s)	1809
HpyAV	CCTTC	8 cut(s)	133, 504, 1136, 1154, 1213, 1401, 1929, 2063
HpyCH4III	ACNGT	8 cut(s)	197, 216, 865, 1043, 1048, 1372, 1402, 1507
HpyCH4IV	ACGT	1 cut(s)	119
HpyF10VI	GCNNNNNNNGC	5 cut(s)	720, 995, 1077, 1086, 1661
HpyF3I	CTNAG	4 cut(s)	719, 751, 768, 1314
HpySE526I	ACGT	1 cut(s)	119
Hsp92I	GRCGYC	1 cut(s)	1655
HspAI	GCGC	1 cut(s)	2181
Kpn2I	TCCGGA	1 cut(s)	2062
KpnI	GGTACC	1 cut(s)	1864
Ksp22I	TGATCA	1 cut(s)	2035
Kzo9I	GATC	9 cut(s)	430, 1245, 1387, 1473, 1793, 1915, 2035, 2043, 2089
LguI	GCTCTTC	2 cut(s)	963, 2390
LmnI	GCTCC	1 cut(s)	559
Lsp1109I	GCAGC	1 cut(s)	1438
LweI	GCATC	2 cut(s)	43, 1680
MaeI	CTAG	5 cut(s)	155, 854, 890, 1395, 2232
MaeII	ACGT	1 cut(s)	119
MaeIII	GTNAC	4 cut(s)	800, 1560, 1828, 1987
MalI	GATC	9 cut(s)	432, 1247, 1389, 1475, 1795, 1917, 2037, 2045, 2091
MboI	GATC	9 cut(s)	430, 1245, 1387, 1473, 1793, 1915, 2035, 2043, 2089
MflI	RGATCY	3 cut(s)	1473, 2043, 2089
MhlI	GDGCHC	4 cut(s)	154, 725, 1414, 1966
MlsI	TGGCCA	1 cut(s)	1071
MluNI	TGGCCA	1 cut(s)	1071
MlyI	GAGTC	4 cut(s)	339, 433, 757, 1625
MmeI	TCCRAC	1 cut(s)	475
Mox20I	TGGCCA	1 cut(s)	1071
MroI	TCCGGA	1 cut(s)	2062
MroXI	GAANNNNTTC	1 cut(s)	1081
MscI	TGGCCA	1 cut(s)	1071
MseI	TTAA	2 cut(s)	1509, 2025
MslI	CAYNNNNRTG	4 cut(s)	1059, 1373, 1847, 1929
Msp20I	TGGCCA	1 cut(s)	1071
MspI	CCGG	1 cut(s)	2063
MspR9I	CCNGG	2 cut(s)	1960, 2001
Mva1269I	GAATGC	2 cut(s)	470, 2217
MvaI	CCWGG	2 cut(s)	1960, 2001
MwoI	GCNNNNNNNGC	5 cut(s)	720, 995, 1077, 1086, 1661
NdeII	GATC	9 cut(s)	430, 1245, 1387, 1473, 1793, 1915, 2035, 2043, 2089
NlaIV	GGNNCC	7 cut(s)	1225, 1342, 1665, 1752, 1862, 1964, 2091
NmuCI	GTSAC	2 cut(s)	1560, 1828
NspI	RCATGY	2 cut(s)	776, 1568
PaeI	GCATGC	1 cut(s)	776
PciI	ACATGT	1 cut(s)	1564
PciSI	GCTCTTC	2 cut(s)	963, 2390
PcsI	WCGNNNNNNNCGW	1 cut(s)	238
PctI	GAATGC	2 cut(s)	470, 2217
PdmI	GAANNNNTTC	1 cut(s)	1081
PfeI	GAWTC	3 cut(s)	308, 502, 1679
PflMI	CCANNNNNTGG	1 cut(s)	612
PkrI	GCNGC	3 cut(s)	58, 316, 1453
PleI	GAGTC	4 cut(s)	339, 433, 757, 1625
PpsI	GAGTC	4 cut(s)	339, 433, 757, 1625
PscI	ACATGT	1 cut(s)	1564
Psp6I	CCWGG	2 cut(s)	1958, 1999
PspGI	CCWGG	2 cut(s)	1958, 1999
PspN4I	GGNNCC	7 cut(s)	1225, 1342, 1665, 1752, 1862, 1964, 2091
PspOMI	GGGCCC	1 cut(s)	1962
PspPI	GGNCC	4 cut(s)	281, 603, 1962, 1963
PstI	CTGCAG	1 cut(s)	1456
PsuI	RGATCY	3 cut(s)	1473, 2043, 2089
RsaI	GTAC	9 cut(s)	9, 1045, 1213, 1399, 1732, 1853, 1862, 2074, 2252
RsaNI	GTAC	9 cut(s)	8, 1044, 1212, 1398, 1731, 1852, 1861, 2073, 2251
RseI	CAYNNNNRTG	4 cut(s)	1059, 1373, 1847, 1929
SapI	GCTCTTC	2 cut(s)	963, 2390
SaqAI	TTAA	2 cut(s)	1509, 2025
SatI	GCNGC	3 cut(s)	57, 315, 1452
Sau3AI	GATC	9 cut(s)	430, 1245, 1387, 1473, 1793, 1915, 2035, 2043, 2089
Sau96I	GGNCC	4 cut(s)	281, 603, 1962, 1963
SchI	GAGTC	4 cut(s)	339, 433, 757, 1625
ScrFI	CCNGG	2 cut(s)	1960, 2001
SduI	GDGCHC	4 cut(s)	154, 725, 1414, 1966
SfaNI	GCATC	2 cut(s)	43, 1680
SfcI	CTRYAG	2 cut(s)	205, 1452
SinI	GGWCC	1 cut(s)	281
SmiMI	CAYNNNNRTG	4 cut(s)	1059, 1373, 1847, 1929
SmlI	CTYRAG	2 cut(s)	253, 1004
SmoI	CTYRAG	2 cut(s)	253, 1004
SphI	GCATGC	1 cut(s)	776
SsiI	CCGC	5 cut(s)	56, 314, 729, 776, 2247
SspMI	CTAG	5 cut(s)	155, 854, 890, 1395, 2232
StyD4I	CCNGG	2 cut(s)	1958, 1999
StyI	CCWWGG	3 cut(s)	633, 1072, 1128
TaaI	ACNGT	8 cut(s)	197, 216, 865, 1043, 1048, 1372, 1402, 1507
TaiI	ACGT	1 cut(s)	122
TaqI	TCGA	6 cut(s)	232, 343, 597, 781, 1248, 1804
TatI	WGTACW	2 cut(s)	7, 1397
TauI	GCSGC	2 cut(s)	59, 317
TfiI	GAWTC	3 cut(s)	308, 502, 1679
Tru1I	TTAA	2 cut(s)	1509, 2025
Tru9I	TTAA	2 cut(s)	1509, 2025
TscAI	CASTG	7 cut(s)	129, 1375, 1422, 1837, 2045, 2100, 2119
TseFI	GTSAC	2 cut(s)	1560, 1828
TseI	GCWGC	1 cut(s)	1451
Tsp45I	GTSAC	2 cut(s)	1560, 1828
TspGWI	ACGGA	2 cut(s)	357, 472
TspRI	CASTG	7 cut(s)	129, 1375, 1422, 1837, 2045, 2100, 2119
Van91I	CCANNNNNTGG	1 cut(s)	612
VneI	GTGCAC	1 cut(s)	1410
VpaK11BI	GGWCC	1 cut(s)	281
XapI	RAATTY	6 cut(s)	228, 332, 992, 1122, 1715, 2206
XceI	RCATGY	2 cut(s)	776, 1568
XmnI	GAANNNNTTC	1 cut(s)	1081
XspI	CTAG	5 cut(s)	155, 854, 890, 1395, 2232

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.