Rorug05G0402800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007230
Physical Location & Seq
Forward (+)
55367640 .. 55368615
976 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0402800.1

Sequence Viewer

Length: 306 bp
ATGGCTATTCGAGTACCAGGAATCATGCATGCTAAGCAGATCTTGCGCCAGTCAAACTTGTTTGTGAACAAGGCGAGTTCAACGTCTTCTGTGGGAGTTCCAAAAGGATATGTCGCTGTGTACGTTGGAGAGAGTGAAAGAAAACGATTTGTGGTTCCGATATCGTTTTTGAGTCAGCCTTTGTTCCAAGAGCTGCTAAGTAAGGCGGAGGAGGAGTACGGGTACAACTATCCAACAGGCGGACTCACGATTCCTTGCAGAGAAGACATCTTCATTGACCTCACTTCTCGACTGAATGGATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.24

Weight (kDa)

8.82

Isoelectric Point (pI)

55.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 16 - 97 2.3e-24 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 206, 240
AfaI GTAC 4 cut(s) 15, 122, 218, 224
AfiI CCNNNNNNNGG 1 cut(s) 239
AgsI TTSAA 1 cut(s) 81
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 1 cut(s) 193
AluI AGCT 1 cut(s) 193
ApeKI GCWGC 1 cut(s) 193
AspLEI GCGC 1 cut(s) 48
BbsI GAAGAC 2 cut(s) 78, 270
BbvI GCAGC 1 cut(s) 180
BciT130I CCWGG 1 cut(s) 18
BglII AGATCT 1 cut(s) 39
BisI GCNGC 1 cut(s) 194
BlpI GCTNAGC 1 cut(s) 33
BlsI GCNGC 1 cut(s) 195
Bme1390I CCNGG 1 cut(s) 18
BmiI GGNNCC 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 18
BpiI GAAGAC 2 cut(s) 78, 270
Bpu1102I GCTNAGC 1 cut(s) 33
BsaXI ACNNNNNCTCC 4 cut(s) 200, 206, 230, 236
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse1I ACTGG 1 cut(s) 49
BseBI CCWGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 49
BseRI GAGGAG 2 cut(s) 224, 227
BseXI GCAGC 1 cut(s) 180
BslI CCNNNNNNNGG 1 cut(s) 239
Bsp143I GATC 1 cut(s) 39
Bsp1720I GCTNAGC 1 cut(s) 33
BspACI CCGC 2 cut(s) 206, 240
BspLI GGNNCC 1 cut(s) 156
BsrI ACTGG 1 cut(s) 49
BssMI GATC 1 cut(s) 39
Bst2UI CCWGG 1 cut(s) 18
BstAPI GCANNNNNTGC 1 cut(s) 43
BstC8I GCNNGC 1 cut(s) 30
BstDEI CTNAG 2 cut(s) 33, 197
BstHHI GCGC 1 cut(s) 48
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMWI GCNNNNNNNGC 2 cut(s) 34, 43
BstNI CCWGG 1 cut(s) 18
BstNSI RCATGY 1 cut(s) 32
BstSCI CCNGG 1 cut(s) 16
BstV1I GCAGC 1 cut(s) 180
BstV2I GAAGAC 2 cut(s) 78, 270
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
Cac8I GCNNGC 1 cut(s) 30
CfoI GCGC 1 cut(s) 48
Csp6I GTAC 4 cut(s) 14, 121, 217, 223
CviAII CATG 2 cut(s) 25, 29
CviJI RGCY 3 cut(s) 5, 178, 193
CviKI_1 RGCY 3 cut(s) 5, 178, 193
CviQI GTAC 4 cut(s) 14, 121, 217, 223
DdeI CTNAG 2 cut(s) 33, 197
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EciI GGCGGA 2 cut(s) 221, 255
Eco32I GATATC 1 cut(s) 162
EcoRII CCWGG 1 cut(s) 16
EcoRV GATATC 1 cut(s) 162
EcoT22I ATGCAT 1 cut(s) 30
FaeI CATG 2 cut(s) 28, 32
FaiI YATR 3 cut(s) 26, 30, 111
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FatI CATG 2 cut(s) 24, 28
Fnu4HI GCNGC 1 cut(s) 194
Fsp4HI GCNGC 1 cut(s) 194
GlaI GCGC 1 cut(s) 47
GluI GCNGC 1 cut(s) 194
HhaI GCGC 1 cut(s) 48
Hin1II CATG 2 cut(s) 28, 32
Hin6I GCGC 1 cut(s) 46
HinP1I GCGC 1 cut(s) 46
HinfI GANTC 4 cut(s) 21, 172, 243, 250
Hpy166II GTNNAC 2 cut(s) 67, 121
Hpy188I TCNGA 1 cut(s) 159
Hpy188III TCNNGA 2 cut(s) 247, 288
Hpy8I GTNNAC 2 cut(s) 67, 121
HpyCH4IV ACGT 2 cut(s) 83, 123
HpyCH4V TGCA 2 cut(s) 28, 258
HpyF10VI GCNNNNNNNGC 2 cut(s) 34, 43
HpyF3I CTNAG 2 cut(s) 33, 197
HpySE526I ACGT 2 cut(s) 83, 123
Hsp92II CATG 2 cut(s) 28, 32
HspAI GCGC 1 cut(s) 46
Kzo9I GATC 1 cut(s) 39
LpnPI CCDG 4 cut(s) 3, 30, 62, 222
Lsp1109I GCAGC 1 cut(s) 180
MaeII ACGT 2 cut(s) 83, 123
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 3 cut(s) 78, 262, 275
MflI RGATCY 1 cut(s) 39
MlyI GAGTC 2 cut(s) 181, 237
MmeI TCCRAC 2 cut(s) 106, 257
MnlI CCTC 3 cut(s) 202, 205, 290
Mph1103I ATGCAT 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 2 cut(s) 34, 43
NdeII GATC 1 cut(s) 39
NlaIII CATG 2 cut(s) 28, 32
NlaIV GGNNCC 1 cut(s) 156
NsiI ATGCAT 1 cut(s) 30
NspI RCATGY 1 cut(s) 32
PaeI GCATGC 1 cut(s) 32
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 2 cut(s) 21, 250
PkrI GCNGC 1 cut(s) 195
PleI GAGTC 2 cut(s) 180, 237
PpsI GAGTC 2 cut(s) 180, 237
Psp6I CCWGG 1 cut(s) 16
PspGI CCWGG 1 cut(s) 16
PspN4I GGNNCC 1 cut(s) 156
PsuI RGATCY 1 cut(s) 39
RsaI GTAC 4 cut(s) 15, 122, 218, 224
RsaNI GTAC 4 cut(s) 14, 121, 217, 223
SatI GCNGC 1 cut(s) 194
Sau3AI GATC 1 cut(s) 39
SchI GAGTC 2 cut(s) 181, 237
ScrFI CCNGG 1 cut(s) 18
SetI ASST 4 cut(s) 86, 126, 195, 282
SphI GCATGC 1 cut(s) 32
SsiI CCGC 2 cut(s) 206, 240
StyD4I CCNGG 1 cut(s) 16
TaiI ACGT 2 cut(s) 86, 126
TaqI TCGA 2 cut(s) 10, 289
TfiI GAWTC 2 cut(s) 21, 250
TseI GCWGC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 262
XceI RCATGY 1 cut(s) 32
Zsp2I ATGCAT 1 cut(s) 30
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.