Prupe.6G055500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0007230
Physical Location & Seq
Forward (+)
3916534 .. 3917530
997 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G055500.1

Sequence Viewer

Length: 243 bp
ATGGGATTTGGAGGCAGTCGGCTGTGCTTGTGTCTCTTGCTTGCCTTTGCTTTAATCTCCTCTGCCCGGAACAACATTCCATTTTCAGATGGTGAGGTGCTAGTGGCCATGGAGGGTAGATCTTTGATGGTGAGGACAGACGACTACAGTGACCCAACTGCTAATCGTGGGCATGATCCCTCGTCCTCCTCCTCCTCCTTCTCTAGAGCCAAGGCTGGGGGCCGCGGTGGCCGAAAAGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

81

Amino Acids

8.37

Weight (kDa)

9.38

Isoelectric Point (pI)

51.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 225
AciI CCGC 2 cut(s) 223, 225
AclWI GGATC 1 cut(s) 170
AcoI YGGCCR 2 cut(s) 105, 229
AfiI CCNNNNNNNGG 2 cut(s) 66, 216
Alw26I GTCTC 1 cut(s) 38
AlwI GGATC 1 cut(s) 170
AoxI GGCC 3 cut(s) 105, 220, 229
AspS9I GGNCC 1 cut(s) 220
AsuC2I CCSGG 1 cut(s) 67
AsuHPI GGTGA 2 cut(s) 104, 142
BalI TGGCCA 1 cut(s) 107
BccI CCATC 2 cut(s) 83, 121
BcnI CCSGG 1 cut(s) 67
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 3 cut(s) 101, 204, 241
BfmI CTRYAG 1 cut(s) 145
BglI GCCNNNNNGGC 2 cut(s) 228, 237
BglII AGATCT 1 cut(s) 119
BisI GCNGC 1 cut(s) 223
BlsI GCNGC 1 cut(s) 224
Bme1390I CCNGG 1 cut(s) 67
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 221
BmrFI CCNGG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 67
BsaJI CCNNGG 3 cut(s) 108, 210, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 66, 216
BseDI CCNNGG 3 cut(s) 108, 210, 223
BseLI CCNNNNNNNGG 2 cut(s) 66, 216
BseRI GAGGAG 4 cut(s) 49, 178, 181, 184
BseYI CCCAGC 1 cut(s) 215
Bsh1236I CGCG 1 cut(s) 225
BshFI GGCC 3 cut(s) 107, 222, 231
BsiSI CCGG 1 cut(s) 67
BslI CCNNNNNNNGG 2 cut(s) 66, 216
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 3 cut(s) 107, 222, 231
Bsp143I GATC 2 cut(s) 119, 175
Bsp19I CCATGG 1 cut(s) 108
BspACI CCGC 2 cut(s) 223, 225
BspANI GGCC 3 cut(s) 107, 222, 231
BspFNI CGCG 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 221
BspPI GGATC 1 cut(s) 170
BssECI CCNNGG 3 cut(s) 108, 210, 223
BssMI GATC 2 cut(s) 119, 175
BssT1I CCWWGG 2 cut(s) 108, 210
Bst4CI ACNGT 1 cut(s) 149
BstC8I GCNNGC 1 cut(s) 42
BstDSI CCRYGG 2 cut(s) 108, 223
BstFNI CGCG 1 cut(s) 225
BstKTI GATC 2 cut(s) 122, 178
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 2 cut(s) 119, 175
BstMWI GCNNNNNNNGC 2 cut(s) 228, 237
BstSCI CCNGG 1 cut(s) 65
BstSFI CTRYAG 1 cut(s) 145
BstUI CGCG 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 3 cut(s) 107, 222, 231
BtgI CCRYGG 2 cut(s) 108, 223
BtsIMutI CAGTG 1 cut(s) 154
Cac8I GCNNGC 1 cut(s) 42
Cfr13I GGNCC 1 cut(s) 220
Cfr42I CCGCGG 1 cut(s) 226
CviAII CATG 2 cut(s) 109, 173
CviJI RGCY 7 cut(s) 22, 107, 209, 215, 222, 231, 240
CviKI_1 RGCY 7 cut(s) 22, 107, 209, 215, 222, 231, 240
DpnI GATC 2 cut(s) 121, 177
DpnII GATC 2 cut(s) 119, 175
EaeI YGGCCR 2 cut(s) 105, 229
Eco130I CCWWGG 2 cut(s) 108, 210
EcoT14I CCWWGG 2 cut(s) 108, 210
ErhI CCWWGG 2 cut(s) 108, 210
FaeI CATG 2 cut(s) 112, 176
FaiI YATR 2 cut(s) 110, 174
FatI CATG 2 cut(s) 108, 172
Fnu4HI GCNGC 1 cut(s) 223
Fsp4HI GCNGC 1 cut(s) 223
FspBI CTAG 3 cut(s) 101, 204, 241
GluI GCNGC 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 219
HaeIII GGCC 3 cut(s) 107, 222, 231
HapII CCGG 1 cut(s) 67
Hin1II CATG 2 cut(s) 112, 176
HpaII CCGG 1 cut(s) 67
HphI GGTGA 2 cut(s) 104, 142
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 1 cut(s) 204
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 149
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 237
Hsp92II CATG 2 cut(s) 112, 176
KspI CCGCGG 1 cut(s) 226
Kzo9I GATC 2 cut(s) 119, 175
LpnPI CCDG 2 cut(s) 80, 201
MaeI CTAG 3 cut(s) 101, 204, 241
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 121, 177
MboI GATC 2 cut(s) 119, 175
MflI RGATCY 1 cut(s) 119
MlsI TGGCCA 1 cut(s) 107
MluNI TGGCCA 1 cut(s) 107
Mox20I TGGCCA 1 cut(s) 107
MscI TGGCCA 1 cut(s) 107
MseI TTAA 1 cut(s) 53
Msp20I TGGCCA 1 cut(s) 107
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 1 cut(s) 67
MspR9I CCNGG 1 cut(s) 67
MvnI CGCG 1 cut(s) 225
MwoI GCNNNNNNNGC 2 cut(s) 228, 237
NciI CCSGG 1 cut(s) 67
NcoI CCATGG 1 cut(s) 108
NdeII GATC 2 cut(s) 119, 175
NlaIII CATG 2 cut(s) 112, 176
NlaIV GGNNCC 1 cut(s) 221
NmuCI GTSAC 1 cut(s) 149
PkrI GCNGC 1 cut(s) 224
PspFI CCCAGC 1 cut(s) 215
PspN4I GGNNCC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 119
SacII CCGCGG 1 cut(s) 226
SaqAI TTAA 1 cut(s) 53
SatI GCNGC 1 cut(s) 223
Sau3AI GATC 2 cut(s) 119, 175
Sau96I GGNCC 1 cut(s) 220
ScrFI CCNGG 1 cut(s) 67
SetI ASST 1 cut(s) 99
SfcI CTRYAG 1 cut(s) 145
SfiI GGCCNNNNNGGCC 1 cut(s) 228
Sfr303I CCGCGG 1 cut(s) 226
SgrBI CCGCGG 1 cut(s) 226
SsiI CCGC 2 cut(s) 223, 225
SspMI CTAG 3 cut(s) 101, 204, 241
StyD4I CCNGG 1 cut(s) 65
StyI CCWWGG 2 cut(s) 108, 210
TaaI ACNGT 1 cut(s) 149
TauI GCSGC 1 cut(s) 225
Tru1I TTAA 1 cut(s) 53
Tru9I TTAA 1 cut(s) 53
TscAI CASTG 1 cut(s) 154
TseFI GTSAC 1 cut(s) 149
Tsp45I GTSAC 1 cut(s) 149
TspRI CASTG 1 cut(s) 154
XbaI TCTAGA 1 cut(s) 203
XspI CTAG 3 cut(s) 101, 204, 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.