Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0007230

Physical Location & Seq

Genomic Coordinates Reverse (-)

75977347 .. 75980780

Gene Structure 3434 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG477600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGAATATGAGTATGGGCTTTGGAGGAAGTCGAGTGTGCATGTTTCTCTTGCTTGTCTATGCCTTAAGCTCTACTGCCAGGAACTTGATTGCATTTCCAGATCGTGAGATGGTAGTGATCAAGAGCACGGAGGGCATATCCATGGGACTAGACGACTATCCTGACCCAGGAAGAGAGAGTGAAAAAACAAAGGGAATGAAAATGGGATTTGGAGGTATACGGCTGTGCTTGTCTCTCTTGCTGGCTTTTGCTGTAGTCTCTTCTGCTTCCAGGAACACCATCGATCCATTTTCAGTTTCAGATAACGACGAAATGGTAATGACGATGGAGGGGAGGTCTTTGATGGCGAGACTAGACGACTACGGTGACACGACTGCGAATCGTGGGCATGATCCGCCATCTGCCTCCAAGGCCAAACCCGGCAAACTCAGTGGCCGAAAGGGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

148

Amino Acids

15.94

Weight (kDa)

7.76

Isoelectric Point (pI)

33.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007230)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G07175 AT1G07175 AT2G29995
fragaria_vesca	FvH4_3g38890 FvH4_3g38890 FvH4_3g38891
malus_domestica	MD03G1067000.v1.1 MD11G1071800.v1.1
prunus_persica	Prupe.6G055500_v2.0.a1
pyrus_communis	pycom03g05340 pycom11g05990
rosa_chinensis	RchiOBHm_Chr5g0070101
rosa_roxburghii	Rroxscaffold_1G00011010 Rroxscaffold_1G00011020
rosa_rugosa	Rorug05G0402600 Rorug05G0402700 Rorug05G0402800
rosa_samantha	Rh5AG458900 Rh5AG459000 Rh5BG477600 Rh5CG501200 Rh5CG501300 Rh5DG489500 Rh5DG489600
rosa_wichuraiana	Rw5G042820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	217
AciI	CCGC	1 cut(s)	395
AclWI	GGATC	2 cut(s)	278, 386
AcoI	YGGCCR	1 cut(s)	433
AfiI	CCNNNNNNNGG	1 cut(s)	167
AflII	CTTAAG	1 cut(s)	64
AjnI	CCWGG	3 cut(s)	77, 166, 269
AluBI	AGCT	1 cut(s)	69
AluI	AGCT	1 cut(s)	69
Alw21I	GWGCWC	1 cut(s)	128
Alw26I	GTCTC	3 cut(s)	237, 262, 343
AlwI	GGATC	2 cut(s)	278, 386
AoxI	GGCC	2 cut(s)	411, 433
AsuC2I	CCSGG	1 cut(s)	420
AsuHPI	GGTGA	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	128
BccI	CCATC	5 cut(s)	103, 287, 319, 337, 406
BceAI	ACGGC	1 cut(s)	236
BciT130I	CCWGG	3 cut(s)	79, 168, 271
BclI	TGATCA	1 cut(s)	117
BcnI	CCSGG	1 cut(s)	420
BcoDI	GTCTC	3 cut(s)	237, 262, 343
BfaI	CTAG	3 cut(s)	149, 353, 445
BfmI	CTRYAG	1 cut(s)	252
BfrI	CTTAAG	1 cut(s)	64
BglI	GCCNNNNNGGC	2 cut(s)	410, 441
Bme1390I	CCNGG	4 cut(s)	79, 168, 271, 420
BmrFI	CCNGG	4 cut(s)	79, 168, 271, 420
BpuMI	CCSGG	1 cut(s)	420
Bsa29I	ATCGAT	1 cut(s)	282
BsaJI	CCNNGG	3 cut(s)	141, 166, 408
BsaXI	ACNNNNNCTCC	2 cut(s)	320, 350
Bsc4I	CCNNNNNNNGG	1 cut(s)	167
BseBI	CCWGG	3 cut(s)	79, 168, 271
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	3 cut(s)	141, 166, 408
BseLI	CCNNNNNNNGG	1 cut(s)	167
BseMII	CTCAG	1 cut(s)	442
BshFI	GGCC	2 cut(s)	413, 435
BshVI	ATCGAT	1 cut(s)	282
BsiHKAI	GWGCWC	1 cut(s)	128
BsiSI	CCGG	1 cut(s)	420
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	167
BsmAI	GTCTC	3 cut(s)	237, 262, 343
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	2 cut(s)	413, 435
Bsp1286I	GDGCHC	1 cut(s)	128
Bsp143I	GATC	4 cut(s)	100, 117, 283, 391
Bsp19I	CCATGG	1 cut(s)	141
BspACI	CCGC	1 cut(s)	395
BspANI	GGCC	2 cut(s)	413, 435
BspCNI	CTCAG	1 cut(s)	441
BspDI	ATCGAT	1 cut(s)	282
BspPI	GGATC	2 cut(s)	278, 386
BspTI	CTTAAG	1 cut(s)	64
BssECI	CCNNGG	3 cut(s)	141, 166, 408
BssMI	GATC	4 cut(s)	100, 117, 283, 391
BssNAI	GTATAC	1 cut(s)	218
BssT1I	CCWWGG	2 cut(s)	141, 408
Bst1107I	GTATAC	1 cut(s)	218
Bst2UI	CCWGG	3 cut(s)	79, 168, 271
Bst4CI	ACNGT	1 cut(s)	365
Bst6I	CTCTTC	2 cut(s)	166, 265
BstAFI	CTTAAG	1 cut(s)	64
BstC8I	GCNNGC	1 cut(s)	243
BstDEI	CTNAG	1 cut(s)	428
BstDSI	CCRYGG	1 cut(s)	141
BstENI	CCTNNNNNAGG	1 cut(s)	165
BstKTI	GATC	4 cut(s)	103, 120, 286, 394
BstMAI	GTCTC	3 cut(s)	237, 262, 343
BstMBI	GATC	4 cut(s)	100, 117, 283, 391
BstMWI	GCNNNNNNNGC	4 cut(s)	132, 394, 410, 441
BstNI	CCWGG	3 cut(s)	79, 168, 271
BstNSI	RCATGY	1 cut(s)	43
BstSCI	CCNGG	4 cut(s)	77, 166, 269, 418
BstSFI	CTRYAG	1 cut(s)	252
BstZ17I	GTATAC	1 cut(s)	218
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	413, 435
BsuTUI	ATCGAT	1 cut(s)	282
BtgI	CCRYGG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	436
Cac8I	GCNNGC	1 cut(s)	243
ClaI	ATCGAT	1 cut(s)	282
CspCI	CAANNNNNGTGG	2 cut(s)	412, 447
CviAII	CATG	3 cut(s)	40, 142, 389
CviJI	RGCY	7 cut(s)	18, 69, 223, 245, 413, 435, 444
CviKI_1	RGCY	7 cut(s)	18, 69, 223, 245, 413, 435, 444
DdeI	CTNAG	1 cut(s)	428
DpnI	GATC	4 cut(s)	102, 119, 285, 393
DpnII	GATC	4 cut(s)	100, 117, 283, 391
EaeI	YGGCCR	1 cut(s)	433
Eam1104I	CTCTTC	2 cut(s)	166, 265
EarI	CTCTTC	2 cut(s)	166, 265
EciI	GGCGGA	1 cut(s)	384
Eco130I	CCWWGG	2 cut(s)	141, 408
EcoNI	CCTNNNNNAGG	1 cut(s)	165
EcoRII	CCWGG	3 cut(s)	77, 166, 269
EcoT14I	CCWWGG	2 cut(s)	141, 408
ErhI	CCWWGG	2 cut(s)	141, 408
FaeI	CATG	3 cut(s)	43, 145, 392
FaiI	YATR	8 cut(s)	8, 14, 41, 60, 137, 143, 218, 390
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	3 cut(s)	39, 141, 388
FbaI	TGATCA	1 cut(s)	117
FblI	GTMKAC	1 cut(s)	217
FspBI	CTAG	3 cut(s)	149, 353, 445
HaeIII	GGCC	2 cut(s)	413, 435
HapII	CCGG	1 cut(s)	420
Hin1II	CATG	3 cut(s)	43, 145, 392
HinfI	GANTC	1 cut(s)	379
HpaII	CCGG	1 cut(s)	420
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	1 cut(s)	301
Hpy188III	TCNNGA	4 cut(s)	98, 104, 121, 161
Hpy8I	GTNNAC	1 cut(s)	218
Hpy99I	CGWCG	1 cut(s)	311
HpyCH4III	ACNGT	1 cut(s)	365
HpyCH4V	TGCA	2 cut(s)	39, 92
HpyF10VI	GCNNNNNNNGC	4 cut(s)	132, 394, 410, 441
HpyF3I	CTNAG	1 cut(s)	428
Hsp92II	CATG	3 cut(s)	43, 145, 392
Ksp22I	TGATCA	1 cut(s)	117
Kzo9I	GATC	4 cut(s)	100, 117, 283, 391
MaeI	CTAG	3 cut(s)	149, 353, 445
MaeIII	GTNAC	1 cut(s)	365
MalI	GATC	4 cut(s)	102, 119, 285, 393
MboI	GATC	4 cut(s)	100, 117, 283, 391
MboII	GAAGA	2 cut(s)	183, 252
MhlI	GDGCHC	1 cut(s)	128
MnlI	CCTC	6 cut(s)	17, 124, 206, 322, 327, 415
MseI	TTAA	1 cut(s)	65
MslI	CAYNNNNRTG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	64
MspI	CCGG	1 cut(s)	420
MspR9I	CCNGG	4 cut(s)	79, 168, 271, 420
MvaI	CCWGG	3 cut(s)	79, 168, 271
MwoI	GCNNNNNNNGC	4 cut(s)	132, 394, 410, 441
NciI	CCSGG	1 cut(s)	420
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	4 cut(s)	100, 117, 283, 391
NlaIII	CATG	3 cut(s)	43, 145, 392
NmuCI	GTSAC	1 cut(s)	365
NspI	RCATGY	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	379
PfoI	TCCNGGA	1 cut(s)	269
Psp6I	CCWGG	3 cut(s)	77, 166, 269
PspGI	CCWGG	3 cut(s)	77, 166, 269
RseI	CAYNNNNRTG	1 cut(s)	140
SaqAI	TTAA	1 cut(s)	65
Sau3AI	GATC	4 cut(s)	100, 117, 283, 391
ScrFI	CCNGG	4 cut(s)	79, 168, 271, 420
SduI	GDGCHC	1 cut(s)	128
SetI	ASST	3 cut(s)	71, 217, 338
SfcI	CTRYAG	1 cut(s)	252
SmiMI	CAYNNNNRTG	1 cut(s)	140
SmlI	CTYRAG	1 cut(s)	64
SmoI	CTYRAG	1 cut(s)	64
SsiI	CCGC	1 cut(s)	395
SspMI	CTAG	3 cut(s)	149, 353, 445
StyD4I	CCNGG	4 cut(s)	77, 166, 269, 418
StyI	CCWWGG	2 cut(s)	141, 408
TaaI	ACNGT	1 cut(s)	365
TaqI	TCGA	2 cut(s)	31, 282
TfiI	GAWTC	1 cut(s)	379
Tru1I	TTAA	1 cut(s)	65
Tru9I	TTAA	1 cut(s)	65
TscAI	CASTG	1 cut(s)	436
TseFI	GTSAC	1 cut(s)	365
Tsp45I	GTSAC	1 cut(s)	365
TspDTI	ATGAA	2 cut(s)	17, 212
TspGWI	ACGGA	1 cut(s)	143
TspRI	CASTG	1 cut(s)	436
Vha464I	CTTAAG	1 cut(s)	64
XagI	CCTNNNNNAGG	1 cut(s)	165
XceI	RCATGY	1 cut(s)	43
XmiI	GTMKAC	1 cut(s)	217
XspI	CTAG	3 cut(s)	149, 353, 445

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.