Rh5AG459000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0007230
Physical Location & Seq
Reverse (-)
78703022 .. 78703376
355 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG459000.1

Sequence Viewer

Length: 267 bp
ATGAATATGAATATGGGCTTTGGAGGAAGTCGAGTGTGCATGTTTCTCTTGCTTGTCTATGCCTTAAGCTCTTCTGCCAGGAACTTGATTCCATTTACAGATCGTGAGATGGTAGTGATCAAGAGCACGGAGGGCATATCCATGGGACTAGCAGACGACTATCCTGACCCAGGTCCTAATCCTCGACATGATCCACCCCCTTCTCATCCCCCTCCCCCTAATGGCAAATCCGGCAAAGTTGACGGTGACAAGGATGATGGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.39

Weight (kDa)

5.06

Isoelectric Point (pI)

31.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 185
AfiI CCNNNNNNNGG 2 cut(s) 170, 221
AflII CTTAAG 1 cut(s) 64
AjnI CCWGG 2 cut(s) 77, 169
AluBI AGCT 1 cut(s) 69
AluI AGCT 1 cut(s) 69
Alw21I GWGCWC 1 cut(s) 128
AlwI GGATC 1 cut(s) 185
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 1 cut(s) 257
AvaII GGWCC 1 cut(s) 173
Bbv12I GWGCWC 1 cut(s) 128
BccI CCATC 2 cut(s) 103, 251
BciT130I CCWGG 2 cut(s) 79, 171
BclI TGATCA 1 cut(s) 117
BfaI CTAG 1 cut(s) 149
BfrI CTTAAG 1 cut(s) 64
Bme1390I CCNGG 2 cut(s) 79, 171
Bme18I GGWCC 1 cut(s) 173
BmgT120I GGNCC 1 cut(s) 173
BmrFI CCNGG 2 cut(s) 79, 171
BoxI GACNNNNGTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 141, 169
Bsc4I CCNNNNNNNGG 2 cut(s) 170, 221
BseBI CCWGG 2 cut(s) 79, 171
BseDI CCNNGG 2 cut(s) 141, 169
BseGI GGATG 2 cut(s) 205, 259
BseLI CCNNNNNNNGG 2 cut(s) 170, 221
BsiHKAI GWGCWC 1 cut(s) 128
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 159
BslI CCNNNNNNNGG 2 cut(s) 170, 221
BsmFI GGGAC 1 cut(s) 159
Bsp1286I GDGCHC 1 cut(s) 128
Bsp143I GATC 3 cut(s) 100, 117, 190
Bsp19I CCATGG 1 cut(s) 141
BspPI GGATC 1 cut(s) 185
BspQI GCTCTTC 1 cut(s) 76
BspTI CTTAAG 1 cut(s) 64
BssECI CCNNGG 2 cut(s) 141, 169
BssMI GATC 3 cut(s) 100, 117, 190
BssT1I CCWWGG 1 cut(s) 141
Bst2UI CCWGG 2 cut(s) 79, 171
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 1 cut(s) 76
BstAFI CTTAAG 1 cut(s) 64
BstDSI CCRYGG 1 cut(s) 141
BstENI CCTNNNNNAGG 1 cut(s) 168
BstF5I GGATG 2 cut(s) 205, 259
BstKTI GATC 3 cut(s) 103, 120, 193
BstMBI GATC 3 cut(s) 100, 117, 190
BstMWI GCNNNNNNNGC 2 cut(s) 132, 231
BstNI CCWGG 2 cut(s) 79, 171
BstNSI RCATGY 1 cut(s) 43
BstPAI GACNNNNGTC 1 cut(s) 171
BstSCI CCNGG 2 cut(s) 77, 169
BtgI CCRYGG 1 cut(s) 141
BtsCI GGATG 2 cut(s) 205, 259
Cfr13I GGNCC 1 cut(s) 173
CviAII CATG 4 cut(s) 40, 142, 188, 264
CviJI RGCY 2 cut(s) 18, 69
CviKI_1 RGCY 2 cut(s) 18, 69
DpnI GATC 3 cut(s) 102, 119, 192
DpnII GATC 3 cut(s) 100, 117, 190
Eam1104I CTCTTC 1 cut(s) 76
EarI CTCTTC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 141
Eco47I GGWCC 1 cut(s) 173
EcoNI CCTNNNNNAGG 1 cut(s) 168
EcoO109I RGGNCCY 1 cut(s) 173
EcoRII CCWGG 2 cut(s) 77, 169
EcoT14I CCWWGG 1 cut(s) 141
ErhI CCWWGG 1 cut(s) 141
FaeI CATG 4 cut(s) 43, 145, 191, 267
FaiI YATR 8 cut(s) 8, 14, 41, 60, 137, 143, 189, 265
FaqI GGGAC 1 cut(s) 159
FatI CATG 4 cut(s) 39, 141, 187, 263
FbaI TGATCA 1 cut(s) 117
FokI GGATG 1 cut(s) 192
FspBI CTAG 1 cut(s) 149
HapII CCGG 1 cut(s) 231
Hin1II CATG 4 cut(s) 43, 145, 191, 267
HincII GTYRAC 1 cut(s) 241
HindII GTYRAC 1 cut(s) 241
HinfI GANTC 1 cut(s) 88
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 257
Hpy166II GTNNAC 1 cut(s) 241
Hpy188III TCNNGA 3 cut(s) 104, 121, 164
Hpy8I GTNNAC 1 cut(s) 241
HpyAV CCTTC 1 cut(s) 210
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 39, 263
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 231
Hsp92II CATG 4 cut(s) 43, 145, 191, 267
Ksp22I TGATCA 1 cut(s) 117
Kzo9I GATC 3 cut(s) 100, 117, 190
LguI GCTCTTC 1 cut(s) 76
LpnPI CCDG 6 cut(s) 64, 91, 156, 177, 183, 244
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 245
MalI GATC 3 cut(s) 102, 119, 192
MboI GATC 3 cut(s) 100, 117, 190
MboII GAAGA 1 cut(s) 63
MhlI GDGCHC 1 cut(s) 128
MnlI CCTC 4 cut(s) 17, 124, 192, 222
MseI TTAA 1 cut(s) 65
MslI CAYNNNNRTG 1 cut(s) 140
MspCI CTTAAG 1 cut(s) 64
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 2 cut(s) 79, 171
MvaI CCWGG 2 cut(s) 79, 171
MwoI GCNNNNNNNGC 2 cut(s) 132, 231
NcoI CCATGG 1 cut(s) 141
NdeII GATC 3 cut(s) 100, 117, 190
NlaIII CATG 4 cut(s) 43, 145, 191, 267
NmuCI GTSAC 1 cut(s) 245
NspI RCATGY 1 cut(s) 43
PciSI GCTCTTC 1 cut(s) 76
PfeI GAWTC 1 cut(s) 88
PpuMI RGGWCCY 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 173
Psp6I CCWGG 2 cut(s) 77, 169
PspGI CCWGG 2 cut(s) 77, 169
PspPI GGNCC 1 cut(s) 173
PspPPI RGGWCCY 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 140
SapI GCTCTTC 1 cut(s) 76
SaqAI TTAA 1 cut(s) 65
Sau3AI GATC 3 cut(s) 100, 117, 190
Sau96I GGNCC 1 cut(s) 173
ScrFI CCNGG 2 cut(s) 79, 171
SduI GDGCHC 1 cut(s) 128
SetI ASST 2 cut(s) 71, 175
SinI GGWCC 1 cut(s) 173
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 64
SmoI CTYRAG 1 cut(s) 64
SspMI CTAG 1 cut(s) 149
StyD4I CCNGG 2 cut(s) 77, 169
StyI CCWWGG 1 cut(s) 141
TaaI ACNGT 1 cut(s) 245
TaqI TCGA 2 cut(s) 31, 184
TfiI GAWTC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 65
Tru9I TTAA 1 cut(s) 65
TseFI GTSAC 1 cut(s) 245
Tsp45I GTSAC 1 cut(s) 245
TspDTI ATGAA 2 cut(s) 17, 23
TspGWI ACGGA 1 cut(s) 143
Vha464I CTTAAG 1 cut(s) 64
VpaK11BI GGWCC 1 cut(s) 173
XagI CCTNNNNNAGG 1 cut(s) 168
XceI RCATGY 1 cut(s) 43
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.