Rorug05G0402600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0007230
Physical Location & Seq
Reverse (-)
55311527 .. 55311953
427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0402600.1

Sequence Viewer

Length: 360 bp
ATGGGTTTTCGGTTACCTGGAATTGTTAATGCCAAGAGAAGTCTTACTCGATCTCTGTCTGGTGGGAAGAACTTAGATATACCAAAAGGTTTCTTTGTTGTTTATGTTGGTGAGAGCCAGAAGAAGCGGTTTGTGATTCCAATATCATATCTGAATGAGCCTCTGTTCATGGATTTGTTGAATCAAGCTCATGAAGAATTTGGATACAATCATCCCATGGGTGGTATCACAATCCCCTGCAGTGAATACACCTTCCTTGATCTCGTTTCTCGCTTAAAACTCACTGATTTGAGGGATGAAGAAGAGGGTGCGAGGGAAAACTTCTCTAATCCTCAAGCTGCTTCTGAGGCTGGGAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

13.28

Weight (kDa)

5.67

Isoelectric Point (pI)

34.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Auxin_inducible PF02519 22 - 91 3.9e-22 Auxin responsive protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 221
AgsI TTSAA 1 cut(s) 181
AjnI CCWGG 1 cut(s) 16
AluBI AGCT 3 cut(s) 188, 338, 357
AluI AGCT 3 cut(s) 188, 338, 357
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 122
BbvI GCAGC 1 cut(s) 325
BciT130I CCWGG 1 cut(s) 18
BciVI GTATCC 1 cut(s) 197
BfmI CTRYAG 1 cut(s) 238
BfuI GTATCC 1 cut(s) 197
BisI GCNGC 1 cut(s) 339
BlsI GCNGC 1 cut(s) 340
Bme1390I CCNGG 1 cut(s) 18
BmrFI CCNGG 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 318
BsaJI CCNNGG 1 cut(s) 216
Bsc4I CCNNNNNNNGG 1 cut(s) 221
BseBI CCWGG 1 cut(s) 18
BseDI CCNNGG 1 cut(s) 216
BseGI GGATG 2 cut(s) 211, 301
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 325
BseYI CCCAGC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 221
Bsp143I GATC 2 cut(s) 50, 259
Bsp19I CCATGG 1 cut(s) 216
BspACI CCGC 1 cut(s) 127
BspCNI CTCAG 1 cut(s) 337
BspHI TCATGA 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 216
BssMI GATC 2 cut(s) 50, 259
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 297
BstDEI CTNAG 2 cut(s) 73, 345
BstDSI CCRYGG 1 cut(s) 216
BstEII GGTNACC 1 cut(s) 12
BstF5I GGATG 2 cut(s) 211, 301
BstKTI GATC 2 cut(s) 53, 262
BstMBI GATC 2 cut(s) 50, 259
BstMWI GCNNNNNNNGC 1 cut(s) 347
BstNI CCWGG 1 cut(s) 18
BstPI GGTNACC 1 cut(s) 12
BstSCI CCNGG 1 cut(s) 16
BstSFI CTRYAG 1 cut(s) 238
BstV1I GCAGC 1 cut(s) 325
BsuI GTATCC 1 cut(s) 197
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 2 cut(s) 211, 301
BtsI GCAGTG 1 cut(s) 247
BtsIMutI CAGTG 2 cut(s) 247, 282
CciI TCATGA 1 cut(s) 190
CviAII CATG 3 cut(s) 169, 191, 217
CviJI RGCY 6 cut(s) 117, 160, 188, 338, 350, 357
CviKI_1 RGCY 6 cut(s) 117, 160, 188, 338, 350, 357
DdeI CTNAG 2 cut(s) 73, 345
DpnI GATC 2 cut(s) 52, 261
DpnII GATC 2 cut(s) 50, 259
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 1 cut(s) 216
Eco91I GGTNACC 1 cut(s) 12
EcoO65I GGTNACC 1 cut(s) 12
EcoRII CCWGG 1 cut(s) 16
EcoT14I CCWWGG 1 cut(s) 216
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 3 cut(s) 172, 194, 220
FaiI YATR 6 cut(s) 80, 105, 148, 170, 192, 218
FatI CATG 3 cut(s) 168, 190, 216
Fnu4HI GCNGC 1 cut(s) 339
FokI GGATG 2 cut(s) 198, 308
Fsp4HI GCNGC 1 cut(s) 339
GluI GCNGC 1 cut(s) 339
GsaI CCCAGC 1 cut(s) 354
Hin1II CATG 3 cut(s) 172, 194, 220
HinfI GANTC 2 cut(s) 136, 181
HphI GGTGA 1 cut(s) 122
Hpy188I TCNGA 2 cut(s) 153, 346
Hpy188III TCNNGA 1 cut(s) 191
HpyAV CCTTC 1 cut(s) 262
HpyCH4V TGCA 1 cut(s) 240
HpyF10VI GCNNNNNNNGC 1 cut(s) 347
HpyF3I CTNAG 2 cut(s) 73, 345
Hsp92II CATG 3 cut(s) 172, 194, 220
Kzo9I GATC 2 cut(s) 50, 259
LmnI GCTCC 1 cut(s) 354
LpnPI CCDG 6 cut(s) 3, 30, 45, 131, 250, 336
Lsp1109I GCAGC 1 cut(s) 325
MaeIII GTNAC 1 cut(s) 12
MalI GATC 2 cut(s) 52, 261
MboI GATC 2 cut(s) 50, 259
MboII GAAGA 5 cut(s) 79, 133, 206, 311, 314
MluCI AATT 2 cut(s) 21, 197
MnlI CCTC 6 cut(s) 171, 285, 298, 306, 340, 342
MseI TTAA 2 cut(s) 27, 275
MspR9I CCNGG 1 cut(s) 18
MvaI CCWGG 1 cut(s) 18
MwoI GCNNNNNNNGC 1 cut(s) 347
NcoI CCATGG 1 cut(s) 216
NdeII GATC 2 cut(s) 50, 259
NlaIII CATG 3 cut(s) 172, 194, 220
PagI TCATGA 1 cut(s) 190
PfeI GAWTC 2 cut(s) 136, 181
PkrI GCNGC 1 cut(s) 340
Psp6I CCWGG 1 cut(s) 16
PspEI GGTNACC 1 cut(s) 12
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 1 cut(s) 16
PstI CTGCAG 1 cut(s) 242
SaqAI TTAA 2 cut(s) 27, 275
SatI GCNGC 1 cut(s) 339
Sau3AI GATC 2 cut(s) 50, 259
ScrFI CCNGG 1 cut(s) 18
SetI ASST 6 cut(s) 19, 91, 190, 254, 340, 359
SfcI CTRYAG 1 cut(s) 238
SmlI CTYRAG 1 cut(s) 333
SmoI CTYRAG 1 cut(s) 333
Sse9I AATT 2 cut(s) 21, 197
SsiI CCGC 1 cut(s) 127
StyD4I CCNGG 1 cut(s) 16
StyI CCWWGG 1 cut(s) 216
TaqI TCGA 1 cut(s) 49
TasI AATT 2 cut(s) 21, 197
TfiI GAWTC 2 cut(s) 136, 181
Tru1I TTAA 2 cut(s) 27, 275
Tru9I TTAA 2 cut(s) 27, 275
TscAI CASTG 2 cut(s) 247, 289
TseI GCWGC 1 cut(s) 338
TspDTI ATGAA 3 cut(s) 157, 207, 312
TspRI CASTG 2 cut(s) 247, 289
XapI RAATTY 1 cut(s) 197
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.