Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008764

Physical Location & Seq

Genomic Coordinates Reverse (-)

6081205 .. 6081731

Gene Structure 527 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1074700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGATCTGCGGTAAAAGGGTTGAAGTTGCCACCAGAAGAGCAGAGGCCAAGGCGGACAATGTCTGGAACCACCTGAGAACGTGCCCGAGTTTCACAGTGAGAACGTGCCCGAGTTTCACAGACGTAATGATGGCAAGGCTAAATACCGGCACAAAGGTGCTTACTGCCGAAGCAGAAGAAAAAGTGTTTCAGCAGACATACGAAAAAATGACAGGAGAAAAGCTCTTACATTCATATGCTTGCTATCTATCAACTTCTCATGGACCTGTGATTGGGATGCTGTACATCTCCGATAACGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

101

Amino Acids

11.28

Weight (kDa)

7.69

Isoelectric Point (pI)

37.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01600 AT4G01600 AT4G01600
fragaria_vesca	FvH4_2g18080
malus_domestica	MD03G1074400.v1.1 MD03G1074700.v1.1 MD03G1075100.v1.1 MD03G1075400.v1.1 MD05G1165500.v1.1 MD10G1154900.v1.1 MD10G1155500.v1.1
prunus_persica	Prupe.8G193700_v2.0.a1
pyrus_communis	pycom03g06000 pycom05g15410 pycom10g13380
rosa_chinensis	RchiOBHm_Chr6g0283471
rosa_laevigata	RLG00000012823
rosa_roxburghii	Rroxscaffold_7G00185510
rosa_rugosa	Rorug06G0154500
rosa_samantha	Rh6AG266900 Rh6CG269300 Rh6DG262700
rosa_wichuraiana	Rw6G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 53
AfaI	GTAC	1 cut(s)	284
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	23
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	1 cut(s)	223
AluI	AGCT	1 cut(s)	223
Ama87I	CYCGRG	2 cut(s)	85, 109
AoxI	GGCC	1 cut(s)	45
AspS9I	GGNCC	1 cut(s)	263
AvaI	CYCGRG	2 cut(s)	85, 109
AvaII	GGWCC	1 cut(s)	263
BaeGI	GKGCMC	2 cut(s)	86, 110
BccI	CCATC	1 cut(s)	124
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	2 cut(s)	85, 109
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	68
BmsI	GCATC	1 cut(s)	267
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BsaJI	CCNNGG	1 cut(s)	48
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	146
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	282
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	65
BseSI	GKGCMC	2 cut(s)	86, 110
BshFI	GGCC	1 cut(s)	47
BsiHKCI	CYCGRG	2 cut(s)	85, 109
BsiSI	CCGG	1 cut(s)	147
BslI	CCNNNNNNNGG	1 cut(s)	272
BsnI	GGCC	1 cut(s)	47
BsoBI	CYCGRG	2 cut(s)	85, 109
Bsp1286I	GDGCHC	2 cut(s)	86, 110
Bsp1407I	TGTACA	1 cut(s)	282
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	9, 53
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	66
BspLI	GGNNCC	1 cut(s)	68
BspQI	GCTCTTC	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	146
BsrGI	TGTACA	1 cut(s)	282
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	3
BssT1I	CCWWGG	1 cut(s)	48
Bst4CI	ACNGT	1 cut(s)	97
Bst6I	CTCTTC	1 cut(s)	31
BstAUI	TGTACA	1 cut(s)	282
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	1 cut(s)	282
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstSLI	GKGCMC	2 cut(s)	86, 110
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	1 cut(s)	282
BtsIMutI	CAGTG	1 cut(s)	102
Cac8I	GCNNGC	1 cut(s)	241
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	283
CviAII	CATG	1 cut(s)	260
CviJI	RGCY	3 cut(s)	47, 139, 223
CviKI_1	RGCY	3 cut(s)	47, 139, 223
CviQI	GTAC	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	31
EarI	CTCTTC	1 cut(s)	31
EciI	GGCGGA	1 cut(s)	68
Eco130I	CCWWGG	1 cut(s)	48
Eco47I	GGWCC	1 cut(s)	263
Eco88I	CYCGRG	2 cut(s)	85, 109
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	1 cut(s)	263
FaiI	YATR	4 cut(s)	199, 235, 237, 261
FatI	CATG	1 cut(s)	259
FauNDI	CATATG	1 cut(s)	235
FokI	GGATG	1 cut(s)	289
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	1 cut(s)	263
HpaII	CCGG	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	1 cut(s)	64
HpyCH4III	ACNGT	1 cut(s)	97
HpyCH4IV	ACGT	3 cut(s)	80, 104, 123
HpyF3I	CTNAG	1 cut(s)	74
HpySE526I	ACGT	3 cut(s)	80, 104, 123
Hsp92II	CATG	1 cut(s)	263
Kzo9I	GATC	1 cut(s)	3
LguI	GCTCTTC	1 cut(s)	31
LpnPI	CCDG	6 cut(s)	46, 49, 86, 160, 198, 279
LweI	GCATC	1 cut(s)	267
MaeII	ACGT	3 cut(s)	80, 104, 123
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	2 cut(s)	48, 188
MhlI	GDGCHC	2 cut(s)	86, 110
MnlI	CCTC	1 cut(s)	37
MslI	CAYNNNNRTG	2 cut(s)	155, 234
MspI	CCGG	1 cut(s)	147
NdeI	CATATG	1 cut(s)	235
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	263
NlaIV	GGNNCC	1 cut(s)	68
OliI	CACNNNNGTG	1 cut(s)	155
PciSI	GCTCTTC	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	59
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	263
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	1 cut(s)	284
RsaNI	GTAC	1 cut(s)	283
RseI	CAYNNNNRTG	2 cut(s)	155, 234
SapI	GCTCTTC	1 cut(s)	31
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	263
SduI	GDGCHC	2 cut(s)	86, 110
SetI	ASST	7 cut(s)	75, 83, 107, 126, 159, 225, 268
SfaNI	GCATC	1 cut(s)	267
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	2 cut(s)	155, 234
SsiI	CCGC	2 cut(s)	9, 53
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	1 cut(s)	97
TaiI	ACGT	3 cut(s)	83, 107, 126
TatI	WGTACW	1 cut(s)	282
TscAI	CASTG	1 cut(s)	102
TspDTI	ATGAA	1 cut(s)	222
TspRI	CASTG	1 cut(s)	102
Tth111I	GACNNNGTC	1 cut(s)	59
VpaK11BI	GGWCC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.