Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008764

Physical Location & Seq

Genomic Coordinates Reverse (-)

16813799 .. 16814593

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13380.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGCTAATATGGTTGAGGCATTGAGCCAGTGCGGTAAAAGGGTTGAAGTTGCCACCAGAAGAGCAGAGGCCATGGTGGATAATGTCTGGAACCACTTGAGAATGTGTCCAAGTTTCACAGAATCAGCGAAGGCAAGGCTAAATACCGGCACAAAGGTGCATACTACTGGAGGACAACAAAAAGTATTCCAGCAGACATTTGAAAGAATTACAGGAGAGAAGCTCTTACATTCATATGCTTGCTATCTATCAACTTCTCATGGATCTGTGATTGGGATGCTGTGCATCTCCAATGTACGAACAGCCTTCTGCAGTGATTTCTCACACTATTTGTCCCCAGGACATCCAACTTCCATGCATTACAAGAACATAAATCCTTCAACAAACATATGGAACCCTTCAGAAAGGTATATACACATTGTCACAAGAGAGGGTCATGAATTCTGGTTCATGGGGTTCATATCCTATGACAAGGCCCTCGGTAATCTTAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAM

Protein Analysis

165

Amino Acids

18.55

Weight (kDa)

8.87

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008764)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G01600 AT4G01600 AT4G01600
fragaria_vesca	FvH4_2g18080
malus_domestica	MD03G1074400.v1.1 MD03G1074700.v1.1 MD03G1075100.v1.1 MD03G1075400.v1.1 MD05G1165500.v1.1 MD10G1154900.v1.1 MD10G1155500.v1.1
prunus_persica	Prupe.8G193700_v2.0.a1
pyrus_communis	pycom03g06000 pycom05g15410 pycom10g13380
rosa_chinensis	RchiOBHm_Chr6g0283471
rosa_laevigata	RLG00000012823
rosa_roxburghii	Rroxscaffold_7G00185510
rosa_rugosa	Rorug06G0154500
rosa_samantha	Rh6AG266900 Rh6CG269300 Rh6DG262700
rosa_wichuraiana	Rw6G023100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	1 cut(s)	271
AcsI	RAATTY	1 cut(s)	440
AcuI	CTGAAG	1 cut(s)	384
AfaI	GTAC	1 cut(s)	297
AgsI	TTSAA	3 cut(s)	47, 203, 381
AjnI	CCWGG	1 cut(s)	337
AleI	CACNNNNGTG	1 cut(s)	155
AluBI	AGCT	2 cut(s)	223, 492
AluI	AGCT	2 cut(s)	223, 492
AlwI	GGATC	1 cut(s)	271
AoxI	GGCC	2 cut(s)	69, 474
ApoI	RAATTY	1 cut(s)	440
AspS9I	GGNCC	1 cut(s)	475
BciT130I	CCWGG	1 cut(s)	339
BfmI	CTRYAG	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	339
BmgT120I	GGNCC	1 cut(s)	475
BmiI	GGNNCC	2 cut(s)	92, 395
BmrFI	CCNGG	1 cut(s)	339
BmsI	GCATC	2 cut(s)	267, 294
BplI	GAGNNNNNCTC	2 cut(s)	207, 239
BpmI	CTGGAG	1 cut(s)	189
BpuEI	CTTGAG	1 cut(s)	118
BsaJI	CCNNGG	3 cut(s)	72, 337, 478
Bse118I	RCCGGY	1 cut(s)	146
Bse1I	ACTGG	2 cut(s)	28, 172
BseBI	CCWGG	1 cut(s)	339
BseDI	CCNNGG	3 cut(s)	72, 337, 478
BseGI	GGATG	2 cut(s)	282, 343
BseNI	ACTGG	2 cut(s)	28, 172
BshFI	GGCC	2 cut(s)	71, 476
BsiSI	CCGG	1 cut(s)	147
BslFI	GGGAC	1 cut(s)	319
BsmFI	GGGAC	1 cut(s)	319
BsnI	GGCC	2 cut(s)	71, 476
Bsp143I	GATC	1 cut(s)	263
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	33
BspANI	GGCC	2 cut(s)	71, 476
BspHI	TCATGA	1 cut(s)	436
BspLI	GGNNCC	2 cut(s)	92, 395
BspMAI	CTGCAG	1 cut(s)	314
BspPI	GGATC	1 cut(s)	271
BspQI	GCTCTTC	1 cut(s)	55
BsrFI	RCCGGY	1 cut(s)	146
BsrI	ACTGG	2 cut(s)	28, 172
BssAI	RCCGGY	1 cut(s)	146
BssECI	CCNNGG	3 cut(s)	72, 337, 478
BssMI	GATC	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	1 cut(s)	339
Bst6I	CTCTTC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	241
BstDEI	CTNAG	1 cut(s)	488
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	282, 343
BstKTI	GATC	1 cut(s)	266
BstMBI	GATC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	339
BstSCI	CCNGG	1 cut(s)	337
BstSFI	CTRYAG	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	263
BstYI	RGATCY	1 cut(s)	263
BsuRI	GGCC	2 cut(s)	71, 476
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	282, 343
BtsI	GCAGTG	1 cut(s)	319
BtsIMutI	CAGTG	2 cut(s)	35, 319
Cac8I	GCNNGC	1 cut(s)	241
CciI	TCATGA	1 cut(s)	436
Cfr10I	RCCGGY	1 cut(s)	146
Cfr13I	GGNCC	1 cut(s)	475
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	5 cut(s)	73, 260, 355, 437, 451
CviJI	RGCY	8 cut(s)	5, 27, 71, 139, 223, 305, 476, 492
CviKI_1	RGCY	8 cut(s)	5, 27, 71, 139, 223, 305, 476, 492
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	488
DpnI	GATC	1 cut(s)	265
DpnII	GATC	1 cut(s)	263
Eam1104I	CTCTTC	1 cut(s)	55
EarI	CTCTTC	1 cut(s)	55
Eco130I	CCWWGG	1 cut(s)	72
Eco57I	CTGAAG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	475
EcoRI	GAATTC	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	337
EcoT14I	CCWWGG	1 cut(s)	72
EcoT22I	ATGCAT	1 cut(s)	360
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	5 cut(s)	76, 263, 358, 440, 454
FaqI	GGGAC	1 cut(s)	319
FatI	CATG	5 cut(s)	72, 259, 354, 436, 450
FauNDI	CATATG	2 cut(s)	235, 389
FokI	GGATG	2 cut(s)	289, 330
GsuI	CTGGAG	1 cut(s)	189
HaeIII	GGCC	2 cut(s)	71, 476
HapII	CCGG	1 cut(s)	147
Hin1II	CATG	5 cut(s)	76, 263, 358, 440, 454
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	147
Hpy188I	TCNGA	1 cut(s)	403
Hpy188III	TCNNGA	2 cut(s)	88, 437
HpyAV	CCTTC	4 cut(s)	124, 316, 387, 408
HpyCH4V	TGCA	4 cut(s)	160, 285, 312, 358
HpyF3I	CTNAG	1 cut(s)	488
Hsp92II	CATG	5 cut(s)	76, 263, 358, 440, 454
Kzo9I	GATC	1 cut(s)	263
LguI	GCTCTTC	1 cut(s)	55
LweI	GCATC	2 cut(s)	267, 294
MaeIII	GTNAC	1 cut(s)	421
MalI	GATC	1 cut(s)	265
MboI	GATC	1 cut(s)	263
MboII	GAAGA	1 cut(s)	72
MflI	RGATCY	1 cut(s)	263
MluCI	AATT	2 cut(s)	207, 440
MmeI	TCCRAC	1 cut(s)	371
MnlI	CCTC	5 cut(s)	10, 61, 164, 424, 488
Mph1103I	ATGCAT	1 cut(s)	360
MslI	CAYNNNNRTG	2 cut(s)	155, 234
MspI	CCGG	1 cut(s)	147
MspR9I	CCNGG	1 cut(s)	339
MvaI	CCWGG	1 cut(s)	339
NcoI	CCATGG	1 cut(s)	72
NdeI	CATATG	2 cut(s)	235, 389
NdeII	GATC	1 cut(s)	263
NlaIII	CATG	5 cut(s)	76, 263, 358, 440, 454
NlaIV	GGNNCC	2 cut(s)	92, 395
NmuCI	GTSAC	1 cut(s)	421
NsiI	ATGCAT	1 cut(s)	360
OliI	CACNNNNGTG	1 cut(s)	155
PagI	TCATGA	1 cut(s)	436
PciSI	GCTCTTC	1 cut(s)	55
PfeI	GAWTC	1 cut(s)	122
Psp6I	CCWGG	1 cut(s)	337
PspGI	CCWGG	1 cut(s)	337
PspN4I	GGNNCC	2 cut(s)	92, 395
PspPI	GGNCC	1 cut(s)	475
PstI	CTGCAG	1 cut(s)	314
PsuI	RGATCY	1 cut(s)	263
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
RseI	CAYNNNNRTG	2 cut(s)	155, 234
SapI	GCTCTTC	1 cut(s)	55
Sau3AI	GATC	1 cut(s)	263
Sau96I	GGNCC	1 cut(s)	475
ScrFI	CCNGG	1 cut(s)	339
SetI	ASST	4 cut(s)	159, 225, 410, 494
SfaNI	GCATC	2 cut(s)	267, 294
SfcI	CTRYAG	1 cut(s)	310
SmiMI	CAYNNNNRTG	2 cut(s)	155, 234
SmlI	CTYRAG	1 cut(s)	97
SmoI	CTYRAG	1 cut(s)	97
Sse9I	AATT	2 cut(s)	207, 440
SsiI	CCGC	1 cut(s)	33
StyD4I	CCNGG	1 cut(s)	337
StyI	CCWWGG	1 cut(s)	72
TasI	AATT	2 cut(s)	207, 440
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	2 cut(s)	35, 319
TseFI	GTSAC	1 cut(s)	421
Tsp45I	GTSAC	1 cut(s)	421
TspDTI	ATGAA	4 cut(s)	222, 439, 448, 453
TspRI	CASTG	2 cut(s)	35, 319
XapI	RAATTY	1 cut(s)	440
Zsp2I	ATGCAT	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.