RchiOBHm_Chr6g0283471

domain in glucosyltransferases, myotubularins and other putative membrane-associated proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0008764
Physical Location & Seq
Reverse (-)
46682226 .. 46684674
2449 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25417

Sequence Viewer

Length: 735 bp
ATGAAGGCTAGAAAAAACAATTCCAACAACATGAACATGATGATGAATGGAAGTCCTCCTCCACCTCCTCCTCCTCAAATTGAAGGCAATGCCTACGCCAACTTCAACCACAACAATCCTTATGTTCAATATTCCCCAGTCCCCACGTCGAATTCACCTACCAAGAGTCCCATAGATAAGGTGCTTGACACATTGAATCATTGTGGTAAAAGGGTTGAAGGTGCCTCCAGAAGAGCAGACACCATTACAGACAATGTCTGGCATCACTTGAGAATGAGTCCTAGTCTTGCAGACGCGGCAATGGCAAGGCTTACTCACGGGACAAAGGCTCTTACAAGAGGGGATGATAAAGTATTCCAGCAAAAATTTGAGACTGTGATGCTACAAGAGAAGCTCCTGCATTCATATGCTTGCTATCTCTCAACTTCTACTGGACCTGTAATTGGAGTGCTGTATATTTCCAATAAAAGAATAGCCTTTTGTAGTGATTTCTGTCACTATATTTCCCCAGCGCATCCGAACACATATTTTAAGGTGGTGGTGCAGCTTGATCAGTTAAGATCAGTGAATCCTTCTGCAAACAGATGGAATCCTTCAGAGAAATACATACAGATAGTAACAAGAGATGGTCATGAGTTCTGGTTCATGGGGTTCATATCATATGACAAGGCCCTCAGTAACCTAACCCAAGCTCTCAACCCTAGTTCTGGTGGAACTCATCTCAACCCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GRAM

Protein Analysis

244

Amino Acids

27.35

Weight (kDa)

9.33

Isoelectric Point (pI)

52.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GRAM PF02893 118 - 232 4.4e-17 GRAM domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 221
AccII CGCG 1 cut(s) 296
AciI CCGC 1 cut(s) 296
AcsI RAATTY 2 cut(s) 151, 365
AcuI CTGAAG 1 cut(s) 579
AfiI CCNNNNNNNGG 2 cut(s) 443, 707
AgsI TTSAA 5 cut(s) 83, 106, 128, 196, 218
AjiI CACGTC 1 cut(s) 147
AluBI AGCT 3 cut(s) 394, 547, 692
AluI AGCT 3 cut(s) 394, 547, 692
Alw26I GTCTC 1 cut(s) 365
AoxI GGCC 1 cut(s) 669
ApeKI GCWGC 1 cut(s) 544
ApoI RAATTY 2 cut(s) 151, 365
AspLEI GCGC 1 cut(s) 514
AspS9I GGNCC 2 cut(s) 434, 670
AsuHPI GGTGA 1 cut(s) 147
AvaII GGWCC 1 cut(s) 434
BanI GGYRCC 1 cut(s) 221
BbvI GCAGC 1 cut(s) 556
BccI CCATC 2 cut(s) 579, 620
BclI TGATCA 1 cut(s) 550
BcoDI GTCTC 1 cut(s) 365
BfaI CTAG 3 cut(s) 9, 282, 702
BisI GCNGC 2 cut(s) 297, 545
BlsI GCNGC 2 cut(s) 298, 546
Bme18I GGWCC 1 cut(s) 434
BmgBI CACGTC 1 cut(s) 147
BmgT120I GGNCC 2 cut(s) 434, 670
BmiI GGNNCC 1 cut(s) 223
BmrI ACTGGG 1 cut(s) 131
BmsI GCATC 3 cut(s) 271, 369, 523
BmuI ACTGGG 1 cut(s) 131
BpmI CTGGAG 1 cut(s) 211
BpuEI CTTGAG 1 cut(s) 289
Bsc4I CCNNNNNNNGG 2 cut(s) 443, 707
Bse1I ACTGG 2 cut(s) 137, 436
Bse3DI GCAATG 2 cut(s) 94, 306
BseGI GGATG 2 cut(s) 349, 514
BseLI CCNNNNNNNGG 2 cut(s) 443, 707
BseMI GCAATG 2 cut(s) 94, 306
BseMII CTCAG 1 cut(s) 688
BseNI ACTGG 2 cut(s) 137, 436
BseRI GAGGAG 4 cut(s) 48, 57, 60, 63
BseXI GCAGC 1 cut(s) 556
BseYI CCCAGC 1 cut(s) 508
BsgI GTGCAG 1 cut(s) 563
Bsh1236I CGCG 1 cut(s) 296
BshFI GGCC 1 cut(s) 671
BshNI GGYRCC 1 cut(s) 221
BslFI GGGAC 3 cut(s) 125, 153, 334
BslI CCNNNNNNNGG 2 cut(s) 443, 707
BsmAI GTCTC 1 cut(s) 365
BsmFI GGGAC 3 cut(s) 125, 153, 334
BsmI GAATGC 1 cut(s) 400
BsnI GGCC 1 cut(s) 671
Bsp143I GATC 2 cut(s) 550, 560
BspACI CCGC 1 cut(s) 296
BspANI GGCC 1 cut(s) 671
BspCNI CTCAG 1 cut(s) 687
BspFNI CGCG 1 cut(s) 296
BspHI TCATGA 1 cut(s) 631
BspLI GGNNCC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 226
BspT107I GGYRCC 1 cut(s) 221
BsrDI GCAATG 2 cut(s) 94, 306
BsrI ACTGG 2 cut(s) 137, 436
BssMI GATC 2 cut(s) 550, 560
Bst4CI ACNGT 1 cut(s) 376
Bst6I CTCTTC 1 cut(s) 226
BstC8I GCNNGC 1 cut(s) 412
BstDEI CTNAG 1 cut(s) 674
BstF5I GGATG 2 cut(s) 349, 514
BstFNI CGCG 1 cut(s) 296
BstHHI GCGC 1 cut(s) 514
BstKTI GATC 2 cut(s) 553, 563
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 2 cut(s) 550, 560
BstMWI GCNNNNNNNGC 2 cut(s) 296, 302
BstUI CGCG 1 cut(s) 296
BstV1I GCAGC 1 cut(s) 556
BsuRI GGCC 1 cut(s) 671
BtrI CACGTC 1 cut(s) 147
BtsCI GGATG 2 cut(s) 349, 514
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 1 cut(s) 412
CciI TCATGA 1 cut(s) 631
CfoI GCGC 1 cut(s) 514
Cfr13I GGNCC 2 cut(s) 434, 670
CseI GACGC 1 cut(s) 302
CviAII CATG 4 cut(s) 31, 37, 632, 646
CviJI RGCY 8 cut(s) 8, 310, 329, 394, 476, 547, 671, 692
CviKI_1 RGCY 8 cut(s) 8, 310, 329, 394, 476, 547, 671, 692
DdeI CTNAG 1 cut(s) 674
DpnI GATC 2 cut(s) 552, 562
DpnII GATC 2 cut(s) 550, 560
Eam1104I CTCTTC 1 cut(s) 226
EarI CTCTTC 1 cut(s) 226
Eco47I GGWCC 1 cut(s) 434
Eco57I CTGAAG 1 cut(s) 579
EcoO109I RGGNCCY 1 cut(s) 670
EcoRI GAATTC 1 cut(s) 151
FaeI CATG 4 cut(s) 34, 40, 635, 649
FaqI GGGAC 3 cut(s) 125, 153, 334
FatI CATG 4 cut(s) 30, 36, 631, 645
FauNDI CATATG 2 cut(s) 406, 661
FbaI TGATCA 1 cut(s) 550
Fnu4HI GCNGC 2 cut(s) 297, 545
FokI GGATG 2 cut(s) 356, 501
Fsp4HI GCNGC 2 cut(s) 297, 545
FspBI CTAG 3 cut(s) 9, 282, 702
GlaI GCGC 1 cut(s) 513
GluI GCNGC 2 cut(s) 297, 545
GsaI CCCAGC 1 cut(s) 512
GsuI CTGGAG 1 cut(s) 211
HaeIII GGCC 1 cut(s) 671
HgaI GACGC 1 cut(s) 302
HhaI GCGC 1 cut(s) 514
Hin1II CATG 4 cut(s) 34, 40, 635, 649
Hin6I GCGC 1 cut(s) 512
HinP1I GCGC 1 cut(s) 512
HinfI GANTC 5 cut(s) 166, 196, 277, 568, 589
HphI GGTGA 1 cut(s) 147
Hpy188I TCNGA 2 cut(s) 519, 598
Hpy188III TCNNGA 2 cut(s) 228, 632
Hpy99I CGWCG 1 cut(s) 151
HpyAV CCTTC 4 cut(s) 77, 212, 582, 603
HpyCH4III ACNGT 1 cut(s) 376
HpyCH4IV ACGT 1 cut(s) 146
HpyCH4V TGCA 4 cut(s) 290, 400, 544, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 296, 302
HpyF3I CTNAG 1 cut(s) 674
HpySE526I ACGT 1 cut(s) 146
Hsp92II CATG 4 cut(s) 34, 40, 635, 649
HspAI GCGC 1 cut(s) 512
Ksp22I TGATCA 1 cut(s) 550
Kzo9I GATC 2 cut(s) 550, 560
LguI GCTCTTC 1 cut(s) 226
LmnI GCTCC 1 cut(s) 399
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 3 cut(s) 271, 369, 523
MaeI CTAG 3 cut(s) 9, 282, 702
MaeII ACGT 1 cut(s) 146
MaeIII GTNAC 3 cut(s) 494, 616, 677
MalI GATC 2 cut(s) 552, 562
MboI GATC 2 cut(s) 550, 560
MboII GAAGA 1 cut(s) 243
MluCI AATT 5 cut(s) 19, 78, 151, 365, 441
MlyI GAGTC 2 cut(s) 175, 286
MmeI TCCRAC 1 cut(s) 48
MnlI CCTC 9 cut(s) 66, 69, 75, 78, 81, 84, 235, 332, 683
MseI TTAA 2 cut(s) 531, 557
MslI CAYNNNNRTG 3 cut(s) 35, 41, 405
Mva1269I GAATGC 1 cut(s) 400
MvnI CGCG 1 cut(s) 296
MwoI GCNNNNNNNGC 2 cut(s) 296, 302
NdeI CATATG 2 cut(s) 406, 661
NdeII GATC 2 cut(s) 550, 560
NlaIII CATG 4 cut(s) 34, 40, 635, 649
NlaIV GGNNCC 1 cut(s) 223
NmuCI GTSAC 1 cut(s) 494
PagI TCATGA 1 cut(s) 631
PciSI GCTCTTC 1 cut(s) 226
PctI GAATGC 1 cut(s) 400
PfeI GAWTC 3 cut(s) 196, 568, 589
PflFI GACNNNGTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 298, 546
PleI GAGTC 2 cut(s) 174, 285
PpsI GAGTC 2 cut(s) 174, 285
PspFI CCCAGC 1 cut(s) 508
PspN4I GGNNCC 1 cut(s) 223
PspPI GGNCC 2 cut(s) 434, 670
PsyI GACNNNGTC 1 cut(s) 254
RseI CAYNNNNRTG 3 cut(s) 35, 41, 405
SapI GCTCTTC 1 cut(s) 226
SaqAI TTAA 2 cut(s) 531, 557
SatI GCNGC 2 cut(s) 297, 545
Sau3AI GATC 2 cut(s) 550, 560
Sau96I GGNCC 2 cut(s) 434, 670
SchI GAGTC 2 cut(s) 175, 286
SfaNI GCATC 3 cut(s) 271, 369, 523
SinI GGWCC 1 cut(s) 434
SmiMI CAYNNNNRTG 3 cut(s) 35, 41, 405
SmlI CTYRAG 1 cut(s) 268
SmoI CTYRAG 1 cut(s) 268
Sse9I AATT 5 cut(s) 19, 78, 151, 365, 441
SsiI CCGC 1 cut(s) 296
SspI AATATT 1 cut(s) 131
SspMI CTAG 3 cut(s) 9, 282, 702
TaaI ACNGT 1 cut(s) 376
TaiI ACGT 1 cut(s) 149
TaqI TCGA 1 cut(s) 149
TasI AATT 5 cut(s) 19, 78, 151, 365, 441
TauI GCSGC 1 cut(s) 299
TfiI GAWTC 3 cut(s) 196, 568, 589
Tru1I TTAA 2 cut(s) 531, 557
Tru9I TTAA 2 cut(s) 531, 557
TscAI CASTG 1 cut(s) 570
TseFI GTSAC 1 cut(s) 494
TseI GCWGC 1 cut(s) 544
Tsp45I GTSAC 1 cut(s) 494
TspDTI ATGAA 6 cut(s) 17, 47, 59, 393, 634, 643
TspRI CASTG 1 cut(s) 570
Tth111I GACNNNGTC 1 cut(s) 254
VpaK11BI GGWCC 1 cut(s) 434
XapI RAATTY 2 cut(s) 151, 365
XspI CTAG 3 cut(s) 9, 282, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.