Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Forward (+)

34615077 .. 34615421

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1259000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCCACCTTGTGCCCAATATGGCGCGAACCACAAGGAGTTCTTCTATGAGTGCAAGCCTCCATGTGCACATTTTGTTGTGAAGGACTATGGTCACATGGACATGTTGGACGACGATCCACAGGGCATGGTTGGGGCAGTGTCGGGGTGCATGTGTAAAAACGGGACAGGACCGAGGGAGCTAATGAGGAAGACTGTGGGTGGGATTGTTGTGGCGTTTCTGAATGCTTATTTGAATGGTGATGATAAGGATTTGGTTGCCATTGTTGGCGATCCTGATAGTTCTCCTGCAAAGCTTGAACCTGTGGAGTTCATTAGAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

108

Amino Acids

11.61

Weight (kDa)

4.97

Isoelectric Point (pI)

24.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	1 - 105	2.3e-43	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	26
AclWI	GGATC	2 cut(s)	110, 266
AdeI	CACNNNGTG	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	102
AgsI	TTSAA	2 cut(s)	235, 299
AluBI	AGCT	2 cut(s)	181, 295
AluI	AGCT	2 cut(s)	181, 295
Alw21I	GWGCWC	1 cut(s)	70
Alw44I	GTGCAC	1 cut(s)	66
AlwI	GGATC	2 cut(s)	110, 266
ApaLI	GTGCAC	1 cut(s)	66
AspLEI	GCGC	1 cut(s)	26
AspS9I	GGNCC	1 cut(s)	170
AsuHPI	GGTGA	1 cut(s)	251
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	2 cut(s)	16, 70
BbsI	GAAGAC	1 cut(s)	197
Bbv12I	GWGCWC	1 cut(s)	70
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	170
BoxI	GACNNNNGTC	1 cut(s)	90
BpiI	GAAGAC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	173
BseDI	CCNNGG	1 cut(s)	173
BseSI	GKGCMC	2 cut(s)	16, 70
Bsh1236I	CGCG	1 cut(s)	26
BsiHKAI	GWGCWC	1 cut(s)	70
BslFI	GGGAC	1 cut(s)	178
BsmFI	GGGAC	1 cut(s)	178
BsmI	GAATGC	1 cut(s)	229
Bsp1286I	GDGCHC	2 cut(s)	16, 70
Bsp143I	GATC	2 cut(s)	115, 271
BspFNI	CGCG	1 cut(s)	26
BspPI	GGATC	2 cut(s)	110, 266
BssECI	CCNNGG	1 cut(s)	173
BssMI	GATC	2 cut(s)	115, 271
Bst4CI	ACNGT	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	56
BstFNI	CGCG	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	26
BstKTI	GATC	2 cut(s)	118, 274
BstMBI	GATC	2 cut(s)	115, 271
BstNSI	RCATGY	2 cut(s)	106, 154
BstPAI	GACNNNNGTC	1 cut(s)	90
BstSLI	GKGCMC	2 cut(s)	16, 70
BstUI	CGCG	1 cut(s)	26
BstV2I	GAAGAC	1 cut(s)	197
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	56
CfoI	GCGC	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	170
CviAII	CATG	5 cut(s)	63, 97, 103, 127, 151
CviJI	RGCY	3 cut(s)	58, 181, 295
CviKI_1	RGCY	3 cut(s)	58, 181, 295
DpnI	GATC	2 cut(s)	117, 273
DpnII	GATC	2 cut(s)	115, 271
DraIII	CACNNNGTG	1 cut(s)	11
Eco47I	GGWCC	1 cut(s)	170
FaeI	CATG	5 cut(s)	66, 100, 106, 130, 154
FaiI	YATR	9 cut(s)	21, 48, 64, 90, 98, 104, 128, 152, 322
FalI	AAGNNNNNCTT	2 cut(s)	26, 58
FaqI	GGGAC	1 cut(s)	178
FatI	CATG	5 cut(s)	62, 96, 102, 126, 150
GlaI	GCGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	26
Hin1II	CATG	5 cut(s)	66, 100, 106, 130, 154
Hin6I	GCGC	1 cut(s)	24
HinP1I	GCGC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	293
HphI	GGTGA	1 cut(s)	251
Hpy166II	GTNNAC	1 cut(s)	68
Hpy188I	TCNGA	1 cut(s)	222
Hpy188III	TCNNGA	1 cut(s)	275
Hpy8I	GTNNAC	1 cut(s)	68
Hpy99I	CGWCG	1 cut(s)	116
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4V	TGCA	4 cut(s)	54, 68, 150, 290
Hsp92II	CATG	5 cut(s)	66, 100, 106, 130, 154
HspAI	GCGC	1 cut(s)	24
Kzo9I	GATC	2 cut(s)	115, 271
LmnI	GCTCC	1 cut(s)	178
LpnPI	CCDG	5 cut(s)	107, 153, 288, 300, 315
MaeIII	GTNAC	1 cut(s)	92
MalI	GATC	2 cut(s)	117, 273
MboI	GATC	2 cut(s)	115, 271
MboII	GAAGA	2 cut(s)	34, 202
MhlI	GDGCHC	2 cut(s)	16, 70
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	3 cut(s)	69, 168, 180
MslI	CAYNNNNRTG	1 cut(s)	101
Mva1269I	GAATGC	1 cut(s)	229
MvnI	CGCG	1 cut(s)	26
NdeII	GATC	2 cut(s)	115, 271
NlaIII	CATG	5 cut(s)	66, 100, 106, 130, 154
NmuCI	GTSAC	1 cut(s)	92
NspI	RCATGY	2 cut(s)	106, 154
PciI	ACATGT	1 cut(s)	102
PctI	GAATGC	1 cut(s)	229
PscI	ACATGT	1 cut(s)	102
PshAI	GACNNNNGTC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	170
RseI	CAYNNNNRTG	1 cut(s)	101
Sau3AI	GATC	2 cut(s)	115, 271
Sau96I	GGNCC	1 cut(s)	170
SduI	GDGCHC	2 cut(s)	16, 70
SetI	ASST	4 cut(s)	10, 183, 297, 304
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	196
TaqII	GACCGA	1 cut(s)	187
TscAI	CASTG	1 cut(s)	144
TseFI	GTSAC	1 cut(s)	92
Tsp45I	GTSAC	1 cut(s)	92
TspDTI	ATGAA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	144
VneI	GTGCAC	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	170
XceI	RCATGY	2 cut(s)	106, 154

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.