Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Reverse (-)

56137211 .. 56139271

Gene Structure 2061 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG328100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGCTCCCAATGAACGAAGACGACGTAAACCCTTTATATAACTGGGTGCCTGCAACTGGACGTGAAGAAATTGAATCAGCTGCAAAAGTGGTAAACTGGTTACCAGAAGGCCTTCAATCTCTGCTGCCTGAAAATGTTGTCGCGGACTTGACCAAATTTGCTCTGTCGGGCCACAGTAAAGGAGGCAAAGCAGCATTTGCACTAGCACTTGGATACGCCAAAGCTTCTTTGTCACTCAAATTTTCAGTACTACTTGGGATTGACCCTGTCGCAGGCGCCAACCAATATTGCAGAACTAATCCCCACATCCTCACCTATGTCCCTCGCTCTTTCGACCTGAATATTCCCGTCGCGGTAATTAGGACTGGCCTTGGACCAGAAAAGAAGAACGATTGCATGTCGCAACTGTGTCCTCCCGAGGGTTTGAACCACAAGGAGTTCTTCAACGAGAGCAAACCCCCATGTGCACATTTTGTGGCCAAGGACTATGGTCACATGGACATGTTGGACGACGATCTACCGGGCGTGGTTGGGCAATGTCGGGATGTATGTGCAAAAATGGAAGCGACCCGAAAGACCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

193

Amino Acids

21.04

Weight (kDa)

5.72

Isoelectric Point (pI)

44.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	12 - 191	2.1e-73	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	46, 275
AccII	CGCG	2 cut(s)	143, 353
AciI	CCGC	2 cut(s)	143, 353
AcoI	YGGCCR	1 cut(s)	477
AcsI	RAATTY	2 cut(s)	155, 239
AcyI	GRCGYC	1 cut(s)	276
AfaI	GTAC	1 cut(s)	249
AfiI	CCNNNNNNNGG	3 cut(s)	56, 272, 419
AflIII	ACRYGT	1 cut(s)	501
AgsI	TTSAA	4 cut(s)	74, 116, 427, 445
AjiI	CACGTC	1 cut(s)	62
AluBI	AGCT	2 cut(s)	80, 224
AluI	AGCT	2 cut(s)	80, 224
Alw21I	GWGCWC	1 cut(s)	469
Alw44I	GTGCAC	1 cut(s)	465
Ama87I	CYCGRG	1 cut(s)	416
AoxI	GGCC	4 cut(s)	109, 169, 367, 477
ApaLI	GTGCAC	1 cut(s)	465
ApeKI	GCWGC	3 cut(s)	80, 124, 191
ApoI	RAATTY	2 cut(s)	155, 239
Asp700I	GAANNNNTTC	1 cut(s)	111
AspLEI	GCGC	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	169, 374
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	1 cut(s)	304
AvaI	CYCGRG	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	374
BaeGI	GKGCMC	1 cut(s)	469
BalI	TGGCCA	1 cut(s)	479
BanI	GGYRCC	2 cut(s)	46, 275
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	469
BbvI	GCAGC	3 cut(s)	67, 111, 203
BciVI	GTATCC	1 cut(s)	206
BcnI	CCSGG	1 cut(s)	522
BfaI	CTAG	1 cut(s)	203
BfoI	RGCGCY	1 cut(s)	279
BfuI	GTATCC	1 cut(s)	206
BisI	GCNGC	3 cut(s)	81, 125, 192
BlsI	GCNGC	3 cut(s)	82, 126, 193
BmcAI	AGTACT	1 cut(s)	249
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	374
BmeT110I	CYCGRG	1 cut(s)	416
BmgBI	CACGTC	1 cut(s)	62
BmgT120I	GGNCC	2 cut(s)	169, 374
BmiI	GGNNCC	2 cut(s)	48, 277
BmrFI	CCNGG	1 cut(s)	522
BmrI	ACTGGG	1 cut(s)	52
BmuI	ACTGGG	1 cut(s)	52
BoxI	GACNNNNGTC	1 cut(s)	489
BpiI	GAAGAC	1 cut(s)	24
BpuMI	CCSGG	1 cut(s)	522
BsaHI	GRCGYC	1 cut(s)	276
BsaJI	CCNNGG	3 cut(s)	370, 417, 480
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 272, 419
Bse1I	ACTGG	4 cut(s)	47, 61, 101, 370
Bse3DI	GCAATG	1 cut(s)	542
BseDI	CCNNGG	3 cut(s)	370, 417, 480
BseGI	GGATG	2 cut(s)	306, 550
BseLI	CCNNNNNNNGG	3 cut(s)	56, 272, 419
BseMI	GCAATG	1 cut(s)	542
BseNI	ACTGG	4 cut(s)	47, 61, 101, 370
BseSI	GKGCMC	1 cut(s)	469
BseXI	GCAGC	3 cut(s)	67, 111, 203
Bsh1236I	CGCG	2 cut(s)	143, 353
BshFI	GGCC	4 cut(s)	111, 171, 369, 479
BshNI	GGYRCC	2 cut(s)	46, 275
BsiHKAI	GWGCWC	1 cut(s)	469
BsiHKCI	CYCGRG	1 cut(s)	416
BsiSI	CCGG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	305
BslI	CCNNNNNNNGG	3 cut(s)	56, 272, 419
BsmFI	GGGAC	1 cut(s)	305
BsnI	GGCC	4 cut(s)	111, 171, 369, 479
BsoBI	CYCGRG	1 cut(s)	416
Bsp1286I	GDGCHC	1 cut(s)	469
Bsp143I	GATC	1 cut(s)	514
BspACI	CCGC	2 cut(s)	143, 353
BspANI	GGCC	4 cut(s)	111, 171, 369, 479
BspFNI	CGCG	2 cut(s)	143, 353
BspLI	GGNNCC	2 cut(s)	48, 277
BspT107I	GGYRCC	2 cut(s)	46, 275
BsrDI	GCAATG	1 cut(s)	542
BsrI	ACTGG	4 cut(s)	47, 61, 101, 370
BssECI	CCNNGG	3 cut(s)	370, 417, 480
BssMI	GATC	1 cut(s)	514
BssNI	GRCGYC	1 cut(s)	276
BssT1I	CCWWGG	2 cut(s)	370, 480
Bst4CI	ACNGT	2 cut(s)	176, 408
BstACI	GRCGYC	1 cut(s)	276
BstAPI	GCANNNNNTGC	1 cut(s)	197
BstC8I	GCNNGC	2 cut(s)	51, 274
BstEII	GGTNACC	1 cut(s)	99
BstENI	CCTNNNNNAGG	1 cut(s)	270
BstF5I	GGATG	2 cut(s)	306, 550
BstFNI	CGCG	2 cut(s)	143, 353
BstH2I	RGCGCY	1 cut(s)	279
BstHHI	GCGC	1 cut(s)	278
BstKTI	GATC	1 cut(s)	517
BstMBI	GATC	1 cut(s)	514
BstMWI	GCNNNNNNNGC	1 cut(s)	197
BstNSI	RCATGY	2 cut(s)	400, 505
BstPAI	GACNNNNGTC	1 cut(s)	489
BstPI	GGTNACC	1 cut(s)	99
BstSCI	CCNGG	1 cut(s)	520
BstSLI	GKGCMC	1 cut(s)	469
BstUI	CGCG	2 cut(s)	143, 353
BstV1I	GCAGC	3 cut(s)	67, 111, 203
BstV2I	GAAGAC	1 cut(s)	24
BsuI	GTATCC	1 cut(s)	206
BsuRI	GGCC	4 cut(s)	111, 171, 369, 479
BtrI	CACGTC	1 cut(s)	62
BtsCI	GGATG	2 cut(s)	306, 550
Cac8I	GCNNGC	2 cut(s)	51, 274
CfoI	GCGC	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	169, 374
Csp6I	GTAC	1 cut(s)	248
CviAII	CATG	4 cut(s)	397, 462, 496, 502
CviJI	RGCY	6 cut(s)	80, 111, 171, 224, 369, 479
CviKI_1	RGCY	6 cut(s)	80, 111, 171, 224, 369, 479
CviQI	GTAC	1 cut(s)	248
DinI	GGCGCC	1 cut(s)	277
DpnI	GATC	1 cut(s)	516
DpnII	GATC	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	477
Eco130I	CCWWGG	2 cut(s)	370, 480
Eco147I	AGGCCT	1 cut(s)	111
Eco47I	GGWCC	1 cut(s)	374
Eco88I	CYCGRG	1 cut(s)	416
Eco91I	GGTNACC	1 cut(s)	99
EcoNI	CCTNNNNNAGG	1 cut(s)	270
EcoO65I	GGTNACC	1 cut(s)	99
EcoT14I	CCWWGG	2 cut(s)	370, 480
EgeI	GGCGCC	1 cut(s)	277
EheI	GGCGCC	1 cut(s)	277
ErhI	CCWWGG	2 cut(s)	370, 480
FaeI	CATG	4 cut(s)	400, 465, 499, 505
FaiI	YATR	9 cut(s)	37, 39, 318, 398, 463, 489, 497, 503, 550
FalI	AAGNNNNNCTT	2 cut(s)	425, 457
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	4 cut(s)	396, 461, 495, 501
Fnu4HI	GCNGC	3 cut(s)	81, 125, 192
FokI	GGATG	2 cut(s)	293, 557
Fsp4HI	GCNGC	3 cut(s)	81, 125, 192
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	277
GluI	GCNGC	3 cut(s)	81, 125, 192
HaeII	RGCGCY	1 cut(s)	279
HaeIII	GGCC	4 cut(s)	111, 171, 369, 479
HapII	CCGG	1 cut(s)	521
HhaI	GCGC	1 cut(s)	278
Hin1I	GRCGYC	1 cut(s)	276
Hin1II	CATG	4 cut(s)	400, 465, 499, 505
Hin6I	GCGC	1 cut(s)	276
HinP1I	GCGC	1 cut(s)	276
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	521
HphI	GGTGA	1 cut(s)	304
Hpy166II	GTNNAC	3 cut(s)	28, 94, 467
Hpy188III	TCNNGA	2 cut(s)	416, 542
Hpy8I	GTNNAC	3 cut(s)	28, 94, 467
Hpy99I	CGWCG	3 cut(s)	26, 353, 515
HpyAV	CCTTC	2 cut(s)	101, 122
HpyCH4III	ACNGT	2 cut(s)	176, 408
HpyCH4IV	ACGT	2 cut(s)	24, 61
HpyCH4V	TGCA	7 cut(s)	53, 83, 200, 291, 396, 467, 554
HpyF10VI	GCNNNNNNNGC	1 cut(s)	197
HpySE526I	ACGT	2 cut(s)	24, 61
Hsp92I	GRCGYC	1 cut(s)	276
Hsp92II	CATG	4 cut(s)	400, 465, 499, 505
HspAI	GCGC	1 cut(s)	276
KasI	GGCGCC	1 cut(s)	275
Kzo9I	GATC	1 cut(s)	514
LmnI	GCTCC	1 cut(s)	9
Lsp1109I	GCAGC	3 cut(s)	67, 111, 203
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	2 cut(s)	24, 61
MaeIII	GTNAC	3 cut(s)	99, 231, 491
MalI	GATC	1 cut(s)	516
MboI	GATC	1 cut(s)	514
MboII	GAAGA	4 cut(s)	29, 77, 397, 433
MhlI	GDGCHC	1 cut(s)	469
MlsI	TGGCCA	1 cut(s)	479
MluCI	AATT	4 cut(s)	69, 155, 239, 357
MluNI	TGGCCA	1 cut(s)	479
Mly113I	GGCGCC	1 cut(s)	276
MmeI	TCCRAC	1 cut(s)	486
MnlI	CCTC	5 cut(s)	176, 320, 333, 412, 423
Mox20I	TGGCCA	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	111
MscI	TGGCCA	1 cut(s)	479
MslI	CAYNNNNRTG	1 cut(s)	500
Msp20I	TGGCCA	1 cut(s)	479
MspA1I	CMGCKG	1 cut(s)	80
MspI	CCGG	1 cut(s)	521
MspR9I	CCNGG	1 cut(s)	522
MvnI	CGCG	2 cut(s)	143, 353
MwoI	GCNNNNNNNGC	1 cut(s)	197
NarI	GGCGCC	1 cut(s)	276
NciI	CCSGG	1 cut(s)	522
NdeII	GATC	1 cut(s)	514
NlaIII	CATG	4 cut(s)	400, 465, 499, 505
NlaIV	GGNNCC	2 cut(s)	48, 277
NmuCI	GTSAC	2 cut(s)	231, 491
NspI	RCATGY	2 cut(s)	400, 505
PceI	AGGCCT	1 cut(s)	111
PciI	ACATGT	1 cut(s)	501
PcsI	WCGNNNNNNNCGW	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	74
PflFI	GACNNNGTC	1 cut(s)	266
PkrI	GCNGC	3 cut(s)	82, 126, 193
PluTI	GGCGCC	1 cut(s)	279
PscI	ACATGT	1 cut(s)	501
PshAI	GACNNNNGTC	1 cut(s)	489
PspEI	GGTNACC	1 cut(s)	99
PspN4I	GGNNCC	2 cut(s)	48, 277
PspPI	GGNCC	2 cut(s)	169, 374
PsyI	GACNNNGTC	1 cut(s)	266
PvuII	CAGCTG	1 cut(s)	80
RsaI	GTAC	1 cut(s)	249
RsaNI	GTAC	1 cut(s)	248
RseI	CAYNNNNRTG	1 cut(s)	500
SatI	GCNGC	3 cut(s)	81, 125, 192
Sau3AI	GATC	1 cut(s)	514
Sau96I	GGNCC	2 cut(s)	169, 374
ScaI	AGTACT	1 cut(s)	249
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	1 cut(s)	469
SetI	ASST	7 cut(s)	27, 64, 82, 226, 317, 339, 581
SfoI	GGCGCC	1 cut(s)	277
SinI	GGWCC	1 cut(s)	374
SmiMI	CAYNNNNRTG	1 cut(s)	500
Sse9I	AATT	4 cut(s)	69, 155, 239, 357
SseBI	AGGCCT	1 cut(s)	111
SsiI	CCGC	2 cut(s)	143, 353
SspDI	GGCGCC	1 cut(s)	275
SspI	AATATT	2 cut(s)	287, 343
SspMI	CTAG	1 cut(s)	203
StuI	AGGCCT	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	2 cut(s)	370, 480
TaaI	ACNGT	2 cut(s)	176, 408
TaiI	ACGT	2 cut(s)	27, 64
TaqI	TCGA	1 cut(s)	333
TasI	AATT	4 cut(s)	69, 155, 239, 357
TatI	WGTACW	1 cut(s)	247
TfiI	GAWTC	1 cut(s)	74
TseFI	GTSAC	2 cut(s)	231, 491
TseI	GCWGC	3 cut(s)	80, 124, 191
Tsp45I	GTSAC	2 cut(s)	231, 491
TspDTI	ATGAA	1 cut(s)	26
Tth111I	GACNNNGTC	1 cut(s)	266
VneI	GTGCAC	1 cut(s)	465
VpaK11BI	GGWCC	1 cut(s)	374
XagI	CCTNNNNNAGG	1 cut(s)	270
XapI	RAATTY	2 cut(s)	155, 239
XceI	RCATGY	2 cut(s)	400, 505
XmnI	GAANNNNTTC	1 cut(s)	111
XspI	CTAG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.