Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Forward (+)

21141263 .. 21142765

Gene Structure 1503 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g20670.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCACTTGTAGAAAAAAATATGTCTTCTGCTCAGCCTGCACTGACCACATCTGTTTTTAATCAAGGAAATTGCCCCTTCAAATGCATCACGGAGGAGACACCACTGTCTTCCTGCTTTGATTCTTCAGCACCTCCAAAGCCCTTGTTCATTGTTACACCGACGGTAGCCGGCACTTACCCTGTAATCTTGCTTCATCACGGCTTCTACCTCCGTAACTACTTCTACGAGGAGTTACTCCAGCACATAGTCTCACATGGATTCATAGCTGTAGCACCTCAGTTATGTGGGGTTGTGCCTCCAAGTGGACCTGAAGAAGTAGAGTCGGGAGCAAAAGTCATAAACTGGTTGCCAAAAGGCCTCCAACCCCTGCTGCCAGAAAATGTTGTAGCAGACTTCACCAAATTTGCTCTTTCAGGCCACAGCAGAGGTGGGAAAACAGCATTTGCAATAGCACTTGGGCGTGCCAAAACTTCCCTGTCCCTCAAAATTTCAGTCCTAATAGGCATTGATCCTGTGGCTGGTGCAAATCGATACTGCAGAACACGTCCTCATATCCTCACCTATTCCCCTCAATCTTTCGACCTCTCGATTCCAGTCACGGTGATCGGCACTGGCCTGGGACCGGAAAGTAAAAATGCTTGCATGTCACAACCTTGTGCCCCAGATGGCGTGAACCACAAGGAGTTCTTCTATGAGTGCAAGCCTCCATGTGCACATTTTGTTGTGAAGGACTATGGTCACATGGACATGTTGGACGATGATCCACAGGGCGTGGTTGGGGCAGTGTCGGGGTGCATGTGTAAAAACGGGACAGGACCGAGGGAGATAATGAGGAAGACTGTGGGTGGGATTGTTGTGGCGTTTCTGAATGCTTATTTGAATGGTGATGATAGGTATTTGCTTGCCATTGTTGGTGATCCTGATAGTTCTCCTGCAAAGCTTGAACCTGTGGAGTTCATTACAGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

324

Amino Acids

34.66

Weight (kDa)

6.13

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	106
AclWI	GGATC	3 cut(s)	506, 758, 914
AcsI	RAATTY	2 cut(s)	404, 489
AcuI	CTGAAG	2 cut(s)	111, 333
AfiI	CCNNNNNNNGG	3 cut(s)	305, 521, 625
AflIII	ACRYGT	2 cut(s)	545, 750
AgsI	TTSAA	3 cut(s)	82, 883, 947
AjiI	CACGTC	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	618
AluBI	AGCT	2 cut(s)	269, 943
AluI	AGCT	2 cut(s)	269, 943
Alw21I	GWGCWC	1 cut(s)	718
Alw26I	GTCTC	2 cut(s)	92, 256
Alw44I	GTGCAC	1 cut(s)	714
AlwI	GGATC	3 cut(s)	506, 758, 914
AoxI	GGCC	3 cut(s)	358, 418, 616
ApaLI	GTGCAC	1 cut(s)	714
ApeKI	GCWGC	1 cut(s)	373
ApoI	RAATTY	2 cut(s)	404, 489
ArsI	GACNNNNNNTTYG	2 cut(s)	480, 512
AspS9I	GGNCC	3 cut(s)	308, 623, 818
AsuHPI	GGTGA	5 cut(s)	391, 553, 616, 899, 929
AvaII	GGWCC	3 cut(s)	308, 623, 818
BaeGI	GKGCMC	2 cut(s)	664, 718
BarI	GAAGNNNNNNTAC	2 cut(s)	177, 209
BbsI	GAAGAC	3 cut(s)	18, 102, 845
Bbv12I	GWGCWC	1 cut(s)	718
BbvI	GCAGC	1 cut(s)	360
BccI	CCATC	1 cut(s)	662
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	1 cut(s)	620
BcoDI	GTCTC	2 cut(s)	92, 256
BfmI	CTRYAG	2 cut(s)	270, 538
BisI	GCNGC	1 cut(s)	374
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	1 cut(s)	375
Bme1390I	CCNGG	1 cut(s)	620
Bme18I	GGWCC	3 cut(s)	308, 623, 818
BmgBI	CACGTC	1 cut(s)	548
BmgT120I	GGNCC	3 cut(s)	308, 623, 818
BmiI	GGNNCC	1 cut(s)	624
BmrFI	CCNGG	1 cut(s)	620
BmsI	GCATC	1 cut(s)	96
BoxI	GACNNNNGTC	1 cut(s)	738
BpiI	GAAGAC	3 cut(s)	18, 102, 845
BpmI	CTGGAG	1 cut(s)	224
Bpu1102I	GCTNAGC	1 cut(s)	33
Bsa29I	ATCGAT	1 cut(s)	532
BsaJI	CCNNGG	2 cut(s)	619, 821
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	321, 351
Bsc4I	CCNNNNNNNGG	3 cut(s)	305, 521, 625
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	3 cut(s)	350, 596, 619
BseBI	CCWGG	1 cut(s)	620
BseCI	ATCGAT	1 cut(s)	532
BseDI	CCNNGG	2 cut(s)	619, 821
BseLI	CCNNNNNNNGG	3 cut(s)	305, 521, 625
BseMII	CTCAG	2 cut(s)	47, 293
BseNI	ACTGG	3 cut(s)	350, 596, 619
BseRI	GAGGAG	2 cut(s)	110, 245
BseSI	GKGCMC	2 cut(s)	664, 718
BseXI	GCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	24
BshFI	GGCC	3 cut(s)	360, 420, 618
BshVI	ATCGAT	1 cut(s)	532
BsiHKAI	GWGCWC	1 cut(s)	718
BsiSI	CCGG	2 cut(s)	171, 626
BslFI	GGGAC	3 cut(s)	466, 636, 826
BslI	CCNNNNNNNGG	3 cut(s)	305, 521, 625
BsmAI	GTCTC	2 cut(s)	92, 256
BsmFI	GGGAC	3 cut(s)	466, 636, 826
BsmI	GAATGC	1 cut(s)	877
BsnI	GGCC	3 cut(s)	360, 420, 618
Bsp1286I	GDGCHC	2 cut(s)	664, 718
Bsp143I	GATC	4 cut(s)	511, 606, 763, 919
Bsp1720I	GCTNAGC	1 cut(s)	33
BspANI	GGCC	3 cut(s)	360, 420, 618
BspCNI	CTCAG	2 cut(s)	46, 292
BspDI	ATCGAT	1 cut(s)	532
BspLI	GGNNCC	1 cut(s)	624
BspMAI	CTGCAG	1 cut(s)	542
BspPI	GGATC	3 cut(s)	506, 758, 914
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	3 cut(s)	350, 596, 619
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	619, 821
BssMI	GATC	4 cut(s)	511, 606, 763, 919
Bst2UI	CCWGG	1 cut(s)	620
Bst4CI	ACNGT	4 cut(s)	108, 166, 604, 844
BstC8I	GCNNGC	6 cut(s)	39, 172, 465, 643, 704, 906
BstDEI	CTNAG	2 cut(s)	33, 279
BstKTI	GATC	4 cut(s)	514, 609, 766, 922
BstMAI	GTCTC	2 cut(s)	92, 256
BstMBI	GATC	4 cut(s)	511, 606, 763, 919
BstMWI	GCNNNNNNNGC	1 cut(s)	38
BstNI	CCWGG	1 cut(s)	620
BstNSI	RCATGY	3 cut(s)	649, 754, 802
BstPAI	GACNNNNGTC	1 cut(s)	738
BstSCI	CCNGG	1 cut(s)	618
BstSFI	CTRYAG	2 cut(s)	270, 538
BstSLI	GKGCMC	2 cut(s)	664, 718
BstV1I	GCAGC	1 cut(s)	360
BstV2I	GAAGAC	3 cut(s)	18, 102, 845
Bsu15I	ATCGAT	1 cut(s)	532
BsuRI	GGCC	3 cut(s)	360, 420, 618
BsuTUI	ATCGAT	1 cut(s)	532
BtrI	CACGTC	1 cut(s)	548
BtsI	GCAGTG	1 cut(s)	792
BtsIMutI	CAGTG	4 cut(s)	41, 104, 612, 792
Cac8I	GCNNGC	6 cut(s)	39, 172, 465, 643, 704, 906
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	308, 623, 818
ClaI	ATCGAT	1 cut(s)	532
CviAII	CATG	6 cut(s)	257, 646, 711, 745, 751, 799
DdeI	CTNAG	2 cut(s)	33, 279
DpnI	GATC	4 cut(s)	513, 608, 765, 921
DpnII	GATC	4 cut(s)	511, 606, 763, 919
DrdI	GACNNNNNNGTC	1 cut(s)	106
DseDI	GACNNNNNNGTC	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	360
Eco47I	GGWCC	3 cut(s)	308, 623, 818
Eco57I	CTGAAG	2 cut(s)	111, 333
EcoRII	CCWGG	1 cut(s)	618
EcoT22I	ATGCAT	1 cut(s)	89
FaeI	CATG	6 cut(s)	260, 649, 714, 748, 754, 802
FalI	AAGNNNNNCTT	2 cut(s)	674, 706
FaqI	GGGAC	3 cut(s)	466, 636, 826
FatI	CATG	6 cut(s)	256, 645, 710, 744, 750, 798
Fnu4HI	GCNGC	1 cut(s)	374
Fsp4HI	GCNGC	1 cut(s)	374
GluI	GCNGC	1 cut(s)	374
GsuI	CTGGAG	1 cut(s)	224
HaeIII	GGCC	3 cut(s)	360, 420, 618
HapII	CCGG	2 cut(s)	171, 626
Hin1II	CATG	6 cut(s)	260, 649, 714, 748, 754, 802
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	4 cut(s)	122, 261, 323, 592
HpaII	CCGG	2 cut(s)	171, 626
HphI	GGTGA	5 cut(s)	391, 553, 616, 899, 929
Hpy166II	GTNNAC	3 cut(s)	308, 676, 716
Hpy188I	TCNGA	1 cut(s)	870
Hpy188III	TCNNGA	3 cut(s)	327, 589, 923
Hpy8I	GTNNAC	3 cut(s)	308, 676, 716
Hpy99I	CGWCG	1 cut(s)	166
HpyAV	CCTTC	2 cut(s)	88, 724
HpyCH4III	ACNGT	4 cut(s)	108, 166, 604, 844
HpyCH4IV	ACGT	1 cut(s)	547
HpyF10VI	GCNNNNNNNGC	1 cut(s)	38
HpyF3I	CTNAG	2 cut(s)	33, 279
HpySE526I	ACGT	1 cut(s)	547
Hsp92II	CATG	6 cut(s)	260, 649, 714, 748, 754, 802
KroI	GCCGGC	1 cut(s)	170
KroNI	GCCGGC	1 cut(s)	172
Kzo9I	GATC	4 cut(s)	511, 606, 763, 919
LmnI	GCTCC	1 cut(s)	329
Lsp1109I	GCAGC	1 cut(s)	360
LweI	GCATC	1 cut(s)	96
MaeII	ACGT	1 cut(s)	547
MaeIII	GTNAC	6 cut(s)	154, 215, 234, 598, 648, 740
MalI	GATC	4 cut(s)	513, 608, 765, 921
MboI	GATC	4 cut(s)	511, 606, 763, 919
MboII	GAAGA	6 cut(s)	18, 102, 117, 326, 682, 850
MhlI	GDGCHC	2 cut(s)	664, 718
MluCI	AATT	3 cut(s)	70, 404, 489
MlyI	GAGTC	1 cut(s)	332
MmeI	TCCRAC	2 cut(s)	388, 735
Mph1103I	ATGCAT	1 cut(s)	89
MroNI	GCCGGC	1 cut(s)	170
MseI	TTAA	1 cut(s)	60
MslI	CAYNNNNRTG	1 cut(s)	749
MspI	CCGG	2 cut(s)	171, 626
MspR9I	CCNGG	1 cut(s)	620
Mva1269I	GAATGC	1 cut(s)	877
MvaI	CCWGG	1 cut(s)	620
MwoI	GCNNNNNNNGC	1 cut(s)	38
NaeI	GCCGGC	1 cut(s)	172
NdeII	GATC	4 cut(s)	511, 606, 763, 919
NgoMIV	GCCGGC	1 cut(s)	170
NlaIII	CATG	6 cut(s)	260, 649, 714, 748, 754, 802
NlaIV	GGNNCC	1 cut(s)	624
NmuCI	GTSAC	3 cut(s)	598, 648, 740
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	3 cut(s)	649, 754, 802
PceI	AGGCCT	1 cut(s)	360
PciI	ACATGT	1 cut(s)	750
PctI	GAATGC	1 cut(s)	877
PdiI	GCCGGC	1 cut(s)	172
PfeI	GAWTC	3 cut(s)	122, 261, 592
PkrI	GCNGC	1 cut(s)	375
PleI	GAGTC	1 cut(s)	331
PpsI	GAGTC	1 cut(s)	331
PscI	ACATGT	1 cut(s)	750
PshAI	GACNNNNGTC	1 cut(s)	738
Psp6I	CCWGG	1 cut(s)	618
PspGI	CCWGG	1 cut(s)	618
PspN4I	GGNNCC	1 cut(s)	624
PspPI	GGNCC	3 cut(s)	308, 623, 818
PstI	CTGCAG	1 cut(s)	542
RseI	CAYNNNNRTG	1 cut(s)	749
SaqAI	TTAA	1 cut(s)	60
SatI	GCNGC	1 cut(s)	374
Sau3AI	GATC	4 cut(s)	511, 606, 763, 919
Sau96I	GGNCC	3 cut(s)	308, 623, 818
SchI	GAGTC	1 cut(s)	332
ScrFI	CCNGG	1 cut(s)	620
SduI	GDGCHC	2 cut(s)	664, 718
SfaNI	GCATC	1 cut(s)	96
SfcI	CTRYAG	2 cut(s)	270, 538
SinI	GGWCC	3 cut(s)	308, 623, 818
SmiMI	CAYNNNNRTG	1 cut(s)	749
Sse9I	AATT	3 cut(s)	70, 404, 489
SseBI	AGGCCT	1 cut(s)	360
StuI	AGGCCT	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	618
TaaI	ACNGT	4 cut(s)	108, 166, 604, 844
TaiI	ACGT	1 cut(s)	550
TaqI	TCGA	3 cut(s)	532, 582, 590
TaqII	GACCGA	1 cut(s)	835
TasI	AATT	3 cut(s)	70, 404, 489
TfiI	GAWTC	3 cut(s)	122, 261, 592
Tru1I	TTAA	1 cut(s)	60
Tru9I	TTAA	1 cut(s)	60
TscAI	CASTG	4 cut(s)	48, 111, 619, 792
TseFI	GTSAC	3 cut(s)	598, 648, 740
TseI	GCWGC	1 cut(s)	373
Tsp45I	GTSAC	3 cut(s)	598, 648, 740
TspDTI	ATGAA	4 cut(s)	139, 185, 253, 949
TspGWI	ACGGA	2 cut(s)	107, 203
TspRI	CASTG	4 cut(s)	48, 111, 619, 792
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	3 cut(s)	308, 623, 818
XapI	RAATTY	2 cut(s)	404, 489
XceI	RCATGY	3 cut(s)	649, 754, 802
XcmI	CCANNNNNNNNNTGG	1 cut(s)	428
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.