Rroxscaffold_7G00177300

Chlorophyllase-1-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
Physical Location & Seq
Forward (+)
16802816 .. 16806797
3982 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00177300.1

Sequence Viewer

Length: 1494 bp
ATGGCATATGTTTTTGATGAAGGAAAGTTCCCCTTCAAATTCATTACAGAGGAAACTCCATTTTCTTCCTGTTTCGATTCCTCAGCCCCTCCAAAGCCGTTGTTAATTGCGACACCAACTGTAAGCGGCACTTATCCAGTACTCTTGCTTCTTCATGGCTTCTACCTCCGCAACTACTTCTACAAAGGAATACTCCAACACATAGCCTCTCATGGATTCATAGTAGTTGGACCTCAGTTATATAGCTTGGTGCCTGCAACCGGACCTGAAGAAATTGAATCAGCTGCAAAAGTGGTAAACTGGTTACCAGAAGGCCTTCAATCTCTTCTGCCTGACAATGTTGTCGCGGACTTGACCAAATTTGCTCTGTCAGGCCACAGTAGAGGAGGCAAAGCAGCATTTGCACTAGCACTTGGATATGCCAAAGCTTCTTTGTCACTCAAATTTTCAGTGCTAATTGGGATTGACCCTGTCGCAGGCGCCAACCAATATTGCAGAACTAATCCCCACATCCTCACCTATGTCCCTCGCTCTTTCGACCTGAATATTCCCGTCGCGGGTTTGAACCACAAGGAGTTCTTCAACGAGAGCAAACCCCCATGTGCACATTTTGTGGCCAAGGACTATGGTCACATGGACATGTTGGACGACGATCTACCGGGCGTGGTTGGAGCAATGTCGGGATGTATGTGCAAAAATGGAAGCGGTCCGAAGGACCTAATGAGGAGGTCTGTGGGCGGAATTGTTGTGGCTTTTTTGAATGCATATTTGAATGGTGAAGATGGAGATCTTCTTGCTATTGTAGCTGATCCTGCTCTTTCTCCTGCAAAGCTTGAACCTGTGGATCACATGTTTCTTTCTCTTGAATTTGAGGTTCGTGATATGTTTGGTTTGTCACTTTGTAATATGAATGCTGCTGCCGCCGCCGCCGCCTGCACCTCGAATTCAATCGGACACAATGTGAAGGATTTGGAGAATGGGGTTTTGAGAAGGGCAGAGGATTGCACATCAGGCCACAGTAGAGGAGGCAAAGCTGCATTTGCACTAGTACTTGGATATGCCAAAGCTTCTTTGTCACTCAAATTTTCAGTGCTAATTGGGATTGACCCTGTCGCAGGCGCCAACCAATATTGCAGAACTAATCCCCACATCCTCACCTATGTCCCTCGCTCTTTCGATCTGAATATTCCCGTTGCGGTAATTGGCACTGGCCTTGGACCAGAAAAGAAGAAAGATTGCATGTCGCAACCGTGTGCTCCCGATGGTTTGAACCACAAGGAGTTCTTCAACGAGAGCAAACCCCCATGTGCACATTTTGTGGCCAAGGACTATGGTCACATGGACATGTTGGACGACGATCTGCCGGGGGTGGTTGGAGCAATGTCGGGATATGGAGATCTTCTTGCTATTGTAGCTGATCCTACACTTTTTCCTGCAAAGCTTGAACCTGTGGAGTTCATCAATGCAGAGAATCGTGGTCAAGGTTATCATTAA

Protein Analysis

497

Amino Acids

53.31

Weight (kDa)

5.72

Isoelectric Point (pI)

44.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Chlorophyllase PF07224 3 - 283 8.1e-112 Chlorophyllase
Chlorophyllase PF07224 335 - 462 5.8e-58 Chlorophyllase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 341
AccB1I GGYRCC 3 cut(s) 250, 479, 1118
AccII CGCG 2 cut(s) 347, 557
AclWI GGATC 3 cut(s) 803, 852, 1412
AcoI YGGCCR 2 cut(s) 615, 1320
AcsI RAATTY 6 cut(s) 38, 359, 443, 866, 943, 1082
AcuI CTGAAG 1 cut(s) 288
AcyI GRCGYC 2 cut(s) 480, 1119
AdeI CACNNNGTG 1 cut(s) 961
AfaI GTAC 2 cut(s) 141, 1050
AfiI CCNNNNNNNGG 4 cut(s) 260, 476, 557, 1115
AflIII ACRYGT 3 cut(s) 639, 849, 1344
AhlI ACTAGT 1 cut(s) 1045
AluBI AGCT 9 cut(s) 246, 284, 428, 806, 832, 1034, 1067, 1415, 1441
AluI AGCT 9 cut(s) 246, 284, 428, 806, 832, 1034, 1067, 1415, 1441
Alw21I GWGCWC 3 cut(s) 607, 1258, 1312
Alw44I GTGCAC 2 cut(s) 603, 1308
AlwI GGATC 3 cut(s) 803, 852, 1412
AoxI GGCC 6 cut(s) 313, 373, 615, 1012, 1210, 1320
ApaLI GTGCAC 2 cut(s) 603, 1308
ApeKI GCWGC 5 cut(s) 284, 395, 914, 917, 1034
ApoI RAATTY 6 cut(s) 38, 359, 443, 866, 943, 1082
Asp700I GAANNNNTTC 1 cut(s) 315
AspLEI GCGC 2 cut(s) 482, 1121
AspS9I GGNCC 5 cut(s) 230, 263, 707, 715, 1217
AsuC2I CCSGG 2 cut(s) 660, 1365
AsuHPI GGTGA 3 cut(s) 508, 788, 1147
AvaII GGWCC 5 cut(s) 230, 263, 707, 715, 1217
BaeGI GKGCMC 2 cut(s) 607, 1312
BalI TGGCCA 2 cut(s) 617, 1322
BanI GGYRCC 3 cut(s) 250, 479, 1118
BarI GAAGNNNNNNTAC 2 cut(s) 132, 164
Bbv12I GWGCWC 3 cut(s) 607, 1258, 1312
BbvCI CCTCAGC 1 cut(s) 82
BbvI GCAGC 5 cut(s) 271, 407, 901, 904, 1021
BccI CCATC 2 cut(s) 776, 1256
BceAI ACGGC 1 cut(s) 82
BcnI CCSGG 2 cut(s) 660, 1365
BcuI ACTAGT 1 cut(s) 1045
BfaI CTAG 2 cut(s) 407, 1046
BfoI RGCGCY 2 cut(s) 483, 1122
BglII AGATCT 2 cut(s) 787, 1396
BmcAI AGTACT 2 cut(s) 141, 1050
Bme1390I CCNGG 2 cut(s) 660, 1365
Bme18I GGWCC 5 cut(s) 230, 263, 707, 715, 1217
BmgT120I GGNCC 5 cut(s) 230, 263, 707, 715, 1217
BmiI GGNNCC 3 cut(s) 252, 481, 1120
BmrFI CCNGG 2 cut(s) 660, 1365
BoxI GACNNNNGTC 2 cut(s) 627, 1332
Bpu10I CCTNAGC 1 cut(s) 82
BpuMI CCSGG 2 cut(s) 660, 1365
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 2 cut(s) 480, 1119
BsaJI CCNNGG 4 cut(s) 618, 1213, 1323, 1364
BsaWI WCCGGW 1 cut(s) 260
Bsc4I CCNNNNNNNGG 4 cut(s) 260, 476, 557, 1115
Bse1I ACTGG 3 cut(s) 137, 305, 1213
Bse3DI GCAATG 2 cut(s) 681, 1386
Bse8I GATNNNNATC 1 cut(s) 786
BseDI CCNNGG 4 cut(s) 618, 1213, 1323, 1364
BseGI GGATG 3 cut(s) 510, 689, 1149
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 4 cut(s) 260, 476, 557, 1115
BseMI GCAATG 2 cut(s) 681, 1386
BseMII CTCAG 2 cut(s) 96, 248
BseNI ACTGG 3 cut(s) 137, 305, 1213
BseRI GAGGAG 3 cut(s) 399, 739, 1038
BseSI GKGCMC 2 cut(s) 607, 1312
BseXI GCAGC 5 cut(s) 271, 407, 901, 904, 1021
BsgI GTGCAG 1 cut(s) 919
Bsh1236I CGCG 2 cut(s) 347, 557
BshFI GGCC 6 cut(s) 315, 375, 617, 1014, 1212, 1322
BshNI GGYRCC 3 cut(s) 250, 479, 1118
BsiHKAI GWGCWC 3 cut(s) 607, 1258, 1312
BsiSI CCGG 3 cut(s) 261, 659, 1364
BslFI GGGAC 2 cut(s) 509, 1148
BslI CCNNNNNNNGG 4 cut(s) 260, 476, 557, 1115
BsmFI GGGAC 2 cut(s) 509, 1148
BsmI GAATGC 2 cut(s) 766, 916
BsnI GGCC 6 cut(s) 315, 375, 617, 1014, 1212, 1322
Bsp1286I GDGCHC 3 cut(s) 607, 1258, 1312
Bsp143I GATC 8 cut(s) 652, 787, 808, 844, 1177, 1357, 1396, 1417
BspANI GGCC 6 cut(s) 315, 375, 617, 1014, 1212, 1322
BspCNI CTCAG 2 cut(s) 95, 247
BspFNI CGCG 2 cut(s) 347, 557
BspLI GGNNCC 3 cut(s) 252, 481, 1120
BspPI GGATC 3 cut(s) 803, 852, 1412
BspT107I GGYRCC 3 cut(s) 250, 479, 1118
BsrDI GCAATG 2 cut(s) 681, 1386
BsrI ACTGG 3 cut(s) 137, 305, 1213
BssECI CCNNGG 4 cut(s) 618, 1213, 1323, 1364
BssMI GATC 8 cut(s) 652, 787, 808, 844, 1177, 1357, 1396, 1417
BssNI GRCGYC 2 cut(s) 480, 1119
BssT1I CCWWGG 3 cut(s) 618, 1213, 1323
Bst4CI ACNGT 4 cut(s) 121, 380, 1019, 1251
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 2 cut(s) 480, 1119
BstAPI GCANNNNNTGC 1 cut(s) 401
BstC8I GCNNGC 4 cut(s) 255, 478, 934, 1117
BstDEI CTNAG 2 cut(s) 82, 234
BstEII GGTNACC 1 cut(s) 303
BstENI CCTNNNNNAGG 2 cut(s) 474, 1113
BstF5I GGATG 3 cut(s) 510, 689, 1149
BstFNI CGCG 2 cut(s) 347, 557
BstH2I RGCGCY 2 cut(s) 483, 1122
BstHHI GCGC 2 cut(s) 482, 1121
BstKTI GATC 8 cut(s) 655, 790, 811, 847, 1180, 1360, 1399, 1420
BstMBI GATC 8 cut(s) 652, 787, 808, 844, 1177, 1357, 1396, 1417
BstNSI RCATGY 4 cut(s) 643, 853, 1243, 1348
BstPAI GACNNNNGTC 2 cut(s) 627, 1332
BstPI GGTNACC 1 cut(s) 303
BstSCI CCNGG 2 cut(s) 658, 1363
BstSLI GKGCMC 2 cut(s) 607, 1312
BstUI CGCG 2 cut(s) 347, 557
BstV1I GCAGC 5 cut(s) 271, 407, 901, 904, 1021
BstX2I RGATCY 2 cut(s) 787, 1396
BstYI RGATCY 2 cut(s) 787, 1396
BsuRI GGCC 6 cut(s) 315, 375, 617, 1014, 1212, 1322
BtsCI GGATG 3 cut(s) 510, 689, 1149
BtsIMutI CAGTG 3 cut(s) 456, 1095, 1206
Cac8I GCNNGC 4 cut(s) 255, 478, 934, 1117
CfoI GCGC 2 cut(s) 482, 1121
Cfr13I GGNCC 5 cut(s) 230, 263, 707, 715, 1217
CpoI CGGWCCG 1 cut(s) 707
Csp6I GTAC 2 cut(s) 140, 1049
CspI CGGWCCG 1 cut(s) 707
CviQI GTAC 2 cut(s) 140, 1049
DdeI CTNAG 2 cut(s) 82, 234
DinI GGCGCC 2 cut(s) 481, 1120
DpnI GATC 8 cut(s) 654, 789, 810, 846, 1179, 1359, 1398, 1419
DpnII GATC 8 cut(s) 652, 787, 808, 844, 1177, 1357, 1396, 1417
DraIII CACNNNGTG 1 cut(s) 961
DrdI GACNNNNNNGTC 1 cut(s) 341
DseDI GACNNNNNNGTC 1 cut(s) 341
EaeI YGGCCR 2 cut(s) 615, 1320
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 753
Eco130I CCWWGG 3 cut(s) 618, 1213, 1323
Eco147I AGGCCT 1 cut(s) 315
Eco47I GGWCC 5 cut(s) 230, 263, 707, 715, 1217
Eco57I CTGAAG 1 cut(s) 288
Eco91I GGTNACC 1 cut(s) 303
EcoNI CCTNNNNNAGG 2 cut(s) 474, 1113
EcoO109I RGGNCCY 1 cut(s) 715
EcoO65I GGTNACC 1 cut(s) 303
EcoRI GAATTC 1 cut(s) 943
EcoT14I CCWWGG 3 cut(s) 618, 1213, 1323
EcoT22I ATGCAT 1 cut(s) 766
EgeI GGCGCC 2 cut(s) 481, 1120
EheI GGCGCC 2 cut(s) 481, 1120
ErhI CCWWGG 3 cut(s) 618, 1213, 1323
FalI AAGNNNNNCTT 8 cut(s) 17, 49, 115, 147, 563, 595, 1268, 1300
FaqI GGGAC 2 cut(s) 509, 1148
FauI CCCGC 1 cut(s) 550
FauNDI CATATG 1 cut(s) 7
FokI GGATG 3 cut(s) 497, 696, 1136
FspBI CTAG 2 cut(s) 407, 1046
GlaI GCGC 2 cut(s) 481, 1120
HaeII RGCGCY 2 cut(s) 483, 1122
HaeIII GGCC 6 cut(s) 315, 375, 617, 1014, 1212, 1322
HapII CCGG 3 cut(s) 261, 659, 1364
HhaI GCGC 2 cut(s) 482, 1121
Hin1I GRCGYC 2 cut(s) 480, 1119
Hin6I GCGC 2 cut(s) 480, 1119
HinP1I GCGC 2 cut(s) 480, 1119
HindIII AAGCTT 4 cut(s) 426, 830, 1065, 1439
HinfI GANTC 4 cut(s) 77, 216, 278, 1471
HpaII CCGG 3 cut(s) 261, 659, 1364
HphI GGTGA 3 cut(s) 508, 788, 1147
Hpy166II GTNNAC 3 cut(s) 298, 605, 1310
Hpy188I TCNGA 3 cut(s) 711, 953, 1182
Hpy188III TCNNGA 5 cut(s) 681, 863, 878, 1259, 1386
Hpy8I GTNNAC 3 cut(s) 298, 605, 1310
Hpy99I CGWCG 3 cut(s) 557, 653, 1358
HpyAV CCTTC 7 cut(s) 14, 43, 305, 326, 706, 958, 984
HpyCH4III ACNGT 4 cut(s) 121, 380, 1019, 1251
HpyF3I CTNAG 2 cut(s) 82, 234
Hsp92I GRCGYC 2 cut(s) 480, 1119
HspAI GCGC 2 cut(s) 480, 1119
KasI GGCGCC 2 cut(s) 479, 1118
Kzo9I GATC 8 cut(s) 652, 787, 808, 844, 1177, 1357, 1396, 1417
LmnI GCTCC 3 cut(s) 671, 1261, 1376
Lsp1109I GCAGC 5 cut(s) 271, 407, 901, 904, 1021
MaeI CTAG 2 cut(s) 407, 1046
MaeIII GTNAC 6 cut(s) 303, 435, 629, 894, 1074, 1334
MalI GATC 8 cut(s) 654, 789, 810, 846, 1179, 1359, 1398, 1419
MboI GATC 8 cut(s) 652, 787, 808, 844, 1177, 1357, 1396, 1417
MflI RGATCY 2 cut(s) 787, 1396
MhlI GDGCHC 3 cut(s) 607, 1258, 1312
MlsI TGGCCA 2 cut(s) 617, 1322
MluNI TGGCCA 2 cut(s) 617, 1322
Mly113I GGCGCC 2 cut(s) 480, 1119
MmeI TCCRAC 6 cut(s) 208, 220, 624, 649, 1329, 1354
Mox20I TGGCCA 2 cut(s) 617, 1322
Mph1103I ATGCAT 1 cut(s) 766
MroXI GAANNNNTTC 1 cut(s) 315
MscI TGGCCA 2 cut(s) 617, 1322
MseI TTAA 2 cut(s) 104, 1492
MslI CAYNNNNRTG 2 cut(s) 638, 1343
Msp20I TGGCCA 2 cut(s) 617, 1322
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 3 cut(s) 261, 659, 1364
MspR9I CCNGG 2 cut(s) 660, 1365
Mva1269I GAATGC 2 cut(s) 766, 916
MvnI CGCG 2 cut(s) 347, 557
NarI GGCGCC 2 cut(s) 480, 1119
NciI CCSGG 2 cut(s) 660, 1365
NdeI CATATG 1 cut(s) 7
NdeII GATC 8 cut(s) 652, 787, 808, 844, 1177, 1357, 1396, 1417
NlaIV GGNNCC 3 cut(s) 252, 481, 1120
NmuCI GTSAC 5 cut(s) 435, 629, 894, 1074, 1334
NsiI ATGCAT 1 cut(s) 766
NspI RCATGY 4 cut(s) 643, 853, 1243, 1348
PceI AGGCCT 1 cut(s) 315
PciI ACATGT 3 cut(s) 639, 849, 1344
PctI GAATGC 2 cut(s) 766, 916
PdmI GAANNNNTTC 1 cut(s) 315
PfeI GAWTC 4 cut(s) 77, 216, 278, 1471
PflFI GACNNNGTC 2 cut(s) 470, 1109
PluTI GGCGCC 2 cut(s) 483, 1122
PpuMI RGGWCCY 1 cut(s) 715
PscI ACATGT 3 cut(s) 639, 849, 1344
PshAI GACNNNNGTC 2 cut(s) 627, 1332
Psp5II RGGWCCY 1 cut(s) 715
PspEI GGTNACC 1 cut(s) 303
PspN4I GGNNCC 3 cut(s) 252, 481, 1120
PspPI GGNCC 5 cut(s) 230, 263, 707, 715, 1217
PspPPI RGGWCCY 1 cut(s) 715
PsuI RGATCY 2 cut(s) 787, 1396
PsyI GACNNNGTC 2 cut(s) 470, 1109
PvuII CAGCTG 1 cut(s) 284
RsaI GTAC 2 cut(s) 141, 1050
RsaNI GTAC 2 cut(s) 140, 1049
RseI CAYNNNNRTG 2 cut(s) 638, 1343
Rsr2I CGGWCCG 1 cut(s) 707
RsrII CGGWCCG 1 cut(s) 707
SaqAI TTAA 2 cut(s) 104, 1492
Sau3AI GATC 8 cut(s) 652, 787, 808, 844, 1177, 1357, 1396, 1417
Sau96I GGNCC 5 cut(s) 230, 263, 707, 715, 1217
ScaI AGTACT 2 cut(s) 141, 1050
ScrFI CCNGG 2 cut(s) 660, 1365
SduI GDGCHC 3 cut(s) 607, 1258, 1312
SfoI GGCGCC 2 cut(s) 481, 1120
SinI GGWCC 5 cut(s) 230, 263, 707, 715, 1217
SmiMI CAYNNNNRTG 2 cut(s) 638, 1343
SpeI ACTAGT 1 cut(s) 1045
SseBI AGGCCT 1 cut(s) 315
SspDI GGCGCC 2 cut(s) 479, 1118
SspI AATATT 4 cut(s) 491, 547, 1130, 1186
SspMI CTAG 2 cut(s) 407, 1046
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 2 cut(s) 658, 1363
StyI CCWWGG 3 cut(s) 618, 1213, 1323
TaaI ACNGT 4 cut(s) 121, 380, 1019, 1251
TaqI TCGA 4 cut(s) 75, 537, 941, 1176
TatI WGTACW 2 cut(s) 139, 1048
TauI GCSGC 5 cut(s) 129, 923, 926, 929, 932
TfiI GAWTC 4 cut(s) 77, 216, 278, 1471
Tru1I TTAA 2 cut(s) 104, 1492
Tru9I TTAA 2 cut(s) 104, 1492
TscAI CASTG 3 cut(s) 456, 1095, 1213
TseFI GTSAC 5 cut(s) 435, 629, 894, 1074, 1334
TseI GCWGC 5 cut(s) 284, 395, 914, 917, 1034
Tsp45I GTSAC 5 cut(s) 435, 629, 894, 1074, 1334
TspDTI ATGAA 6 cut(s) 31, 33, 143, 208, 923, 1447
TspRI CASTG 3 cut(s) 456, 1095, 1213
Tth111I GACNNNGTC 2 cut(s) 470, 1109
VneI GTGCAC 2 cut(s) 603, 1308
VpaK11BI GGWCC 5 cut(s) 230, 263, 707, 715, 1217
XagI CCTNNNNNAGG 2 cut(s) 474, 1113
XapI RAATTY 6 cut(s) 38, 359, 443, 866, 943, 1082
XceI RCATGY 4 cut(s) 643, 853, 1243, 1348
XmnI GAANNNNTTC 1 cut(s) 315
XspI CTAG 2 cut(s) 407, 1046
ZrmI AGTACT 2 cut(s) 141, 1050
Zsp2I ATGCAT 1 cut(s) 766
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.