Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Forward (+)

16508418 .. 16509966

Gene Structure 1549 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012237

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGACGCCGACTGGTTTGATCTTCCTCCAGATCTTGTTGTATCCATCGCCAAGAGAATTGTCTGCTTGGAAGATTTTGCTGCTTTTGGTGCTGCTTGTAAATCATGGAGATCAAAAGCTACCAAGGAAAACTTTATTGGGGAATTCACTCATCAAGTTCCAATCCTTATGCTCCCAATGAACGAAGACGACGTAAACCCTTCATACCCGAATCGAGCTGCCAAGATCAGTAATTACGTACTGGAGAAGATGGAACTATCCAACCTCCCGTCCTCAAGTCATAAACGAGGAAAGGATGAAAATTGGGCGAGTATTCGTGTTAGTTATTATCTAGATAGAAGTATAGTGGATCTAACTTGTTTCAATGGAGAATGTTATGTTGTGGACTATTTGGGGGAAGTTTTTGTTCTTGATTTTGTAAATAGAATCAAAGTGAGGAGAGTTGCTGCACCACCAATGCCAGGTTGTTCTGGTCGTTACAAAATACAAACTATACCTTGTGGAATCAGCAGCGGCCTTACTGAAGTGCATCATTCTCGGTTGACGTCTCAGACATTTGTGGCTGCAAAAACTAATCCCCACATCCTCACATATGTCCCTCGCTCTTTCGACCTGAATATTCCCATTGCGGTAATTGGGACTGGCCTTGGACCAGAAAAGAAGAACGATTGCATGTCGCAACTGTCCGAGGGTTTGAACCACAAGGAGTTCTTCAACAAGAGCAAACCCCCATGTGCACATTTTGTGGCCAAGGACTATGGTCACATGGACATGTTGGACAACGATCTACCGGGGGTGGTTGGAGCAATGTCGGGATGTATGTGCAAAAATGGAAGCGACCCGAAGGACCTAATGAGGAAGTCTGTGGGCGGAATTGTTGTGGCTTTTTTGAATGCATATTTGAATGGTGAAGATGGAGATCTTCTTGCTATTATAGTTGATCCTGCACTTTCTCCTGCAAAGCTTGAACCTGTGGAGTTCATCAATGCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

331

Amino Acids

36.38

Weight (kDa)

5.92

Isoelectric Point (pI)

39.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	188 - 328	2e-54	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	548
AciI	CCGC	3 cut(s)	513, 629, 870
AclWI	GGATC	2 cut(s)	357, 935
AcoI	YGGCCR	1 cut(s)	747
AcsI	RAATTY	1 cut(s)	143
AcuI	CTGAAG	1 cut(s)	543
AcyI	GRCGYC	2 cut(s)	6, 545
AfaI	GTAC	1 cut(s)	240
AfiI	CCNNNNNNNGG	1 cut(s)	461
AflIII	ACRYGT	1 cut(s)	771
AgsI	TTSAA	6 cut(s)	364, 697, 715, 892, 904, 968
AjnI	CCWGG	1 cut(s)	460
AjuI	GAANNNNNNNTTGG	2 cut(s)	120, 152
AluBI	AGCT	3 cut(s)	119, 218, 964
AluI	AGCT	3 cut(s)	119, 218, 964
Alw21I	GWGCWC	1 cut(s)	739
Alw26I	GTCTC	1 cut(s)	552
Alw44I	GTGCAC	1 cut(s)	735
AlwI	GGATC	2 cut(s)	357, 935
AoxI	GGCC	3 cut(s)	514, 643, 747
ApaLI	GTGCAC	1 cut(s)	735
ApeKI	GCWGC	6 cut(s)	80, 92, 218, 446, 510, 563
ApoI	RAATTY	1 cut(s)	143
AspS9I	GGNCC	2 cut(s)	650, 847
AsuC2I	CCSGG	1 cut(s)	792
AsuHPI	GGTGA	1 cut(s)	920
AvaII	GGWCC	2 cut(s)	650, 847
BaeGI	GKGCMC	1 cut(s)	739
BalI	TGGCCA	1 cut(s)	749
BbsI	GAAGAC	1 cut(s)	192
Bbv12I	GWGCWC	1 cut(s)	739
BbvI	GCAGC	6 cut(s)	67, 79, 205, 433, 522, 550
BccI	CCATC	3 cut(s)	53, 244, 908
BcgI	CGANNNNNNTGC	2 cut(s)	518, 552
BciT130I	CCWGG	1 cut(s)	462
BciVI	GTATCC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	792
BcoDI	GTCTC	1 cut(s)	552
BfaI	CTAG	1 cut(s)	332
BfuI	GTATCC	1 cut(s)	52
BglII	AGATCT	2 cut(s)	31, 919
BisI	GCNGC	7 cut(s)	81, 93, 219, 447, 511, 514, 564
BlsI	GCNGC	7 cut(s)	82, 94, 220, 448, 512, 515, 565
Bme1390I	CCNGG	2 cut(s)	462, 792
Bme18I	GGWCC	2 cut(s)	650, 847
BmgT120I	GGNCC	2 cut(s)	650, 847
BmrFI	CCNGG	2 cut(s)	462, 792
BmsI	GCATC	1 cut(s)	538
BoxI	GACNNNNGTC	1 cut(s)	759
BpiI	GAAGAC	1 cut(s)	192
BpmI	CTGGAG	2 cut(s)	12, 263
BpuEI	CTTGAG	1 cut(s)	259
BpuMI	CCSGG	1 cut(s)	792
BsaAI	YACGTR	1 cut(s)	238
BsaBI	GATNNNNATC	1 cut(s)	918
BsaHI	GRCGYC	2 cut(s)	6, 545
BsaJI	CCNNGG	5 cut(s)	123, 646, 687, 750, 791
Bsc4I	CCNNNNNNNGG	1 cut(s)	461
Bse1I	ACTGG	3 cut(s)	17, 246, 646
Bse3DI	GCAATG	2 cut(s)	624, 813
Bse8I	GATNNNNATC	1 cut(s)	918
BseBI	CCWGG	1 cut(s)	462
BseDI	CCNNGG	5 cut(s)	123, 646, 687, 750, 791
BseGI	GGATG	3 cut(s)	301, 582, 821
BseJI	GATNNNNATC	1 cut(s)	918
BseLI	CCNNNNNNNGG	1 cut(s)	461
BseMI	GCAATG	2 cut(s)	624, 813
BseMII	CTCAG	1 cut(s)	563
BseNI	ACTGG	3 cut(s)	17, 246, 646
BseRI	GAGGAG	1 cut(s)	451
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	6 cut(s)	67, 79, 205, 433, 522, 550
BsgI	GTGCAG	2 cut(s)	432, 930
BshFI	GGCC	3 cut(s)	516, 645, 749
BsiHKAI	GWGCWC	1 cut(s)	739
BsiSI	CCGG	1 cut(s)	791
BslFI	GGGAC	2 cut(s)	581, 652
BslI	CCNNNNNNNGG	1 cut(s)	461
BsmAI	GTCTC	1 cut(s)	552
BsmBI	CGTCTC	1 cut(s)	552
BsmFI	GGGAC	2 cut(s)	581, 652
BsmI	GAATGC	1 cut(s)	898
BsnI	GGCC	3 cut(s)	516, 645, 749
Bsp1286I	GDGCHC	1 cut(s)	739
Bsp143I	GATC	8 cut(s)	19, 31, 110, 225, 349, 784, 919, 940
BspACI	CCGC	3 cut(s)	513, 629, 870
BspANI	GGCC	3 cut(s)	516, 645, 749
BspCNI	CTCAG	1 cut(s)	562
BspPI	GGATC	2 cut(s)	357, 935
BsrDI	GCAATG	2 cut(s)	624, 813
BsrI	ACTGG	3 cut(s)	17, 246, 646
BssECI	CCNNGG	5 cut(s)	123, 646, 687, 750, 791
BssMI	GATC	8 cut(s)	19, 31, 110, 225, 349, 784, 919, 940
BssNI	GRCGYC	2 cut(s)	6, 545
BssT1I	CCWWGG	3 cut(s)	123, 646, 750
Bst2UI	CCWGG	1 cut(s)	462
Bst4CI	ACNGT	1 cut(s)	684
BstACI	GRCGYC	2 cut(s)	6, 545
BstBAI	YACGTR	1 cut(s)	238
BstDEI	CTNAG	1 cut(s)	549
BstF5I	GGATG	3 cut(s)	301, 582, 821
BstKTI	GATC	8 cut(s)	22, 34, 113, 228, 352, 787, 922, 943
BstMAI	GTCTC	1 cut(s)	552
BstMBI	GATC	8 cut(s)	19, 31, 110, 225, 349, 784, 919, 940
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNI	CCWGG	1 cut(s)	462
BstNSI	RCATGY	2 cut(s)	676, 775
BstPAI	GACNNNNGTC	1 cut(s)	759
BstSCI	CCNGG	2 cut(s)	460, 790
BstSLI	GKGCMC	1 cut(s)	739
BstSNI	TACGTA	1 cut(s)	238
BstV1I	GCAGC	6 cut(s)	67, 79, 205, 433, 522, 550
BstV2I	GAAGAC	1 cut(s)	192
BstX2I	RGATCY	3 cut(s)	31, 349, 919
BstYI	RGATCY	3 cut(s)	31, 349, 919
BsuI	GTATCC	1 cut(s)	52
BsuRI	GGCC	3 cut(s)	516, 645, 749
BtgZI	GCGATG	1 cut(s)	31
BtsCI	GGATG	3 cut(s)	301, 582, 821
Cfr13I	GGNCC	2 cut(s)	650, 847
CseI	GACGC	1 cut(s)	14
Csp6I	GTAC	1 cut(s)	239
CviAII	CATG	5 cut(s)	105, 673, 732, 766, 772
CviJI	RGCY	8 cut(s)	119, 218, 516, 563, 645, 749, 884, 964
CviKI_1	RGCY	8 cut(s)	119, 218, 516, 563, 645, 749, 884, 964
CviQI	GTAC	1 cut(s)	239
DdeI	CTNAG	1 cut(s)	549
DpnI	GATC	8 cut(s)	21, 33, 112, 227, 351, 786, 921, 942
DpnII	GATC	8 cut(s)	19, 31, 110, 225, 349, 784, 919, 940
EaeI	YGGCCR	1 cut(s)	747
EciI	GGCGGA	1 cut(s)	885
Eco105I	TACGTA	1 cut(s)	238
Eco130I	CCWWGG	3 cut(s)	123, 646, 750
Eco47I	GGWCC	2 cut(s)	650, 847
Eco57I	CTGAAG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	847
EcoRI	GAATTC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	460
EcoT14I	CCWWGG	3 cut(s)	123, 646, 750
EcoT22I	ATGCAT	1 cut(s)	898
ErhI	CCWWGG	3 cut(s)	123, 646, 750
Esp3I	CGTCTC	1 cut(s)	552
FaeI	CATG	5 cut(s)	108, 676, 735, 769, 775
FalI	AAGNNNNNCTT	4 cut(s)	116, 148, 695, 727
FaqI	GGGAC	2 cut(s)	581, 652
FatI	CATG	5 cut(s)	104, 672, 731, 765, 771
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	7 cut(s)	81, 93, 219, 447, 511, 514, 564
FokI	GGATG	3 cut(s)	308, 569, 828
Fsp4HI	GCNGC	7 cut(s)	81, 93, 219, 447, 511, 514, 564
FspBI	CTAG	1 cut(s)	332
GluI	GCNGC	7 cut(s)	81, 93, 219, 447, 511, 514, 564
GsuI	CTGGAG	2 cut(s)	12, 263
HaeIII	GGCC	3 cut(s)	516, 645, 749
HapII	CCGG	1 cut(s)	791
HgaI	GACGC	1 cut(s)	14
Hin1I	GRCGYC	2 cut(s)	6, 545
Hin1II	CATG	5 cut(s)	108, 676, 735, 769, 775
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HindIII	AAGCTT	1 cut(s)	962
HinfI	GANTC	3 cut(s)	211, 426, 504
HpaII	CCGG	1 cut(s)	791
HphI	GGTGA	1 cut(s)	920
Hpy166II	GTNNAC	4 cut(s)	196, 385, 543, 737
Hpy188I	TCNGA	2 cut(s)	552, 688
Hpy188III	TCNNGA	4 cut(s)	29, 332, 410, 813
Hpy8I	GTNNAC	4 cut(s)	196, 385, 543, 737
Hpy99I	CGWCG	1 cut(s)	194
HpyAV	CCTTC	2 cut(s)	210, 838
HpyCH4III	ACNGT	1 cut(s)	684
HpyCH4IV	ACGT	3 cut(s)	192, 237, 545
HpyCH4V	TGCA	9 cut(s)	449, 529, 566, 672, 737, 825, 896, 947, 959
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	1 cut(s)	549
HpySE526I	ACGT	3 cut(s)	192, 237, 545
Hsp92I	GRCGYC	2 cut(s)	6, 545
Hsp92II	CATG	5 cut(s)	108, 676, 735, 769, 775
Kzo9I	GATC	8 cut(s)	19, 31, 110, 225, 349, 784, 919, 940
LmnI	GCTCC	2 cut(s)	177, 803
Lsp1109I	GCAGC	6 cut(s)	67, 79, 205, 433, 522, 550
LweI	GCATC	1 cut(s)	538
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	3 cut(s)	192, 237, 545
MaeIII	GTNAC	2 cut(s)	476, 761
MalI	GATC	8 cut(s)	21, 33, 112, 227, 351, 786, 921, 942
MboI	GATC	8 cut(s)	19, 31, 110, 225, 349, 784, 919, 940
MboII	GAAGA	8 cut(s)	14, 83, 197, 259, 673, 703, 914, 923
MflI	RGATCY	3 cut(s)	31, 349, 919
MhlI	GDGCHC	1 cut(s)	739
MlsI	TGGCCA	1 cut(s)	749
MluCI	AATT	6 cut(s)	57, 143, 232, 301, 633, 873
MluNI	TGGCCA	1 cut(s)	749
MmeI	TCCRAC	3 cut(s)	285, 756, 781
MnlI	CCTC	9 cut(s)	36, 275, 281, 283, 429, 596, 609, 682, 849
Mox20I	TGGCCA	1 cut(s)	749
Mph1103I	ATGCAT	1 cut(s)	898
MscI	TGGCCA	1 cut(s)	749
MslI	CAYNNNNRTG	1 cut(s)	770
Msp20I	TGGCCA	1 cut(s)	749
MspA1I	CMGCKG	1 cut(s)	513
MspI	CCGG	1 cut(s)	791
MspR9I	CCNGG	2 cut(s)	462, 792
Mva1269I	GAATGC	1 cut(s)	898
MvaI	CCWGG	1 cut(s)	462
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	1 cut(s)	792
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	8 cut(s)	19, 31, 110, 225, 349, 784, 919, 940
NlaIII	CATG	5 cut(s)	108, 676, 735, 769, 775
NmuCI	GTSAC	1 cut(s)	761
NsiI	ATGCAT	1 cut(s)	898
NspI	RCATGY	2 cut(s)	676, 775
PciI	ACATGT	1 cut(s)	771
PcsI	WCGNNNNNNNCGW	1 cut(s)	189
PctI	GAATGC	1 cut(s)	898
PfeI	GAWTC	3 cut(s)	211, 426, 504
PkrI	GCNGC	7 cut(s)	82, 94, 220, 448, 512, 515, 565
Ppu21I	YACGTR	1 cut(s)	238
PpuMI	RGGWCCY	1 cut(s)	847
PscI	ACATGT	1 cut(s)	771
PshAI	GACNNNNGTC	1 cut(s)	759
Psp5II	RGGWCCY	1 cut(s)	847
Psp6I	CCWGG	1 cut(s)	460
PspGI	CCWGG	1 cut(s)	460
PspPI	GGNCC	2 cut(s)	650, 847
PspPPI	RGGWCCY	1 cut(s)	847
PsuI	RGATCY	3 cut(s)	31, 349, 919
RsaI	GTAC	1 cut(s)	240
RsaNI	GTAC	1 cut(s)	239
RseI	CAYNNNNRTG	1 cut(s)	770
SatI	GCNGC	7 cut(s)	81, 93, 219, 447, 511, 514, 564
Sau3AI	GATC	8 cut(s)	19, 31, 110, 225, 349, 784, 919, 940
Sau96I	GGNCC	2 cut(s)	650, 847
ScrFI	CCNGG	2 cut(s)	462, 792
SduI	GDGCHC	1 cut(s)	739
SfaNI	GCATC	1 cut(s)	538
SinI	GGWCC	2 cut(s)	650, 847
SmiMI	CAYNNNNRTG	1 cut(s)	770
SmlI	CTYRAG	1 cut(s)	274
SmoI	CTYRAG	1 cut(s)	274
SnaBI	TACGTA	1 cut(s)	238
Sse9I	AATT	6 cut(s)	57, 143, 232, 301, 633, 873
SsiI	CCGC	3 cut(s)	513, 629, 870
SspI	AATATT	1 cut(s)	619
SspMI	CTAG	1 cut(s)	332
StyD4I	CCNGG	2 cut(s)	460, 790
StyI	CCWWGG	3 cut(s)	123, 646, 750
TaaI	ACNGT	1 cut(s)	684
TaiI	ACGT	3 cut(s)	195, 240, 548
TaqI	TCGA	2 cut(s)	214, 609
TasI	AATT	6 cut(s)	57, 143, 232, 301, 633, 873
TauI	GCSGC	1 cut(s)	516
TfiI	GAWTC	3 cut(s)	211, 426, 504
TseFI	GTSAC	1 cut(s)	761
TseI	GCWGC	6 cut(s)	80, 92, 218, 446, 510, 563
Tsp45I	GTSAC	1 cut(s)	761
TspDTI	ATGAA	4 cut(s)	192, 194, 312, 970
VneI	GTGCAC	1 cut(s)	735
VpaK11BI	GGWCC	2 cut(s)	650, 847
XapI	RAATTY	1 cut(s)	143
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	2 cut(s)	676, 775
XspI	CTAG	1 cut(s)	332
ZraI	GACGTC	1 cut(s)	546
Zsp2I	ATGCAT	1 cut(s)	898

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.