Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Forward (+)

16537985 .. 16539598

Gene Structure 1614 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012242

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAGAGTTGGAGACGACGAAGTCTAGTGGTGACTGAATTTTCCTATAGCTTGGTGCCTGCAACCGGACCTGAAGAAATTGAATCAGCTACAAAAGTCGTAAAATGGTTACCAGAAGGCCTTCAATCTCTTCTGCCTGACAATGTTGTCACGGACTTGACCAAATTTGCTCTGTCAGGCCACAGTACAGGAGGCAAAGCAGCATTTCCACTAGCACTTGGATATGCCAAAGCTTCTTTGTCCCTCAAATTTTCAGCGCTAATTGGGATTGACCCTGTCGCAGGCGTCAACCAATATTGCAGAACTAATCCCCACATCCTCACCTATGTCCCTTGCTCTTTCGACCTGAATATTCCTGTCGCGGTAATTGGCACTGGCCTTGGACCGGAAAAGAAGAACGATTGCATGTCGCAACCGTGTGCTTCCGAGGGTATGAACCACAAGGAGTTCTTCAACGAGAGCAAATCCCCATGTGCACATTTTGTGGCCAAGGACTATGGTCACATGGACATGTTGGATGATCTACCGGGTGTAGTTGGAGCCATGTCGGGATGTATGTGTAAAAATGGAGGCGATCCGAAGGACCTAATGAGGAAGTCTGTGGGCGGAATTGTTGTGGCTCTTTTGAATGCATATTTGAATGGTGAAGATGGAGATCTTCTTGCTGTTGTAGCTGATCCTGCTCTTTCTCCAGCAAAGCTTAAAGCTGTGGAGTTCATCAATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

243

Amino Acids

25.72

Weight (kDa)

5.54

Isoelectric Point (pI)

47.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	15 - 240	9.5e-93	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	21, 146
AccB1I	GGYRCC	1 cut(s)	55
AccII	CGCG	1 cut(s)	362
AciI	CCGC	2 cut(s)	362, 606
AclWI	GGATC	2 cut(s)	569, 671
AcoI	YGGCCR	1 cut(s)	486
AcsI	RAATTY	3 cut(s)	38, 164, 248
AcuI	CTGAAG	1 cut(s)	93
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	1 cut(s)	187
AfeI	AGCGCT	1 cut(s)	258
AfiI	CCNNNNNNNGG	3 cut(s)	65, 281, 385
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	83, 125, 454, 628, 640
AluBI	AGCT	6 cut(s)	51, 89, 233, 674, 700, 707
AluI	AGCT	6 cut(s)	51, 89, 233, 674, 700, 707
Alw21I	GWGCWC	1 cut(s)	478
Alw26I	GTCTC	1 cut(s)	7
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	569, 671
Aor51HI	AGCGCT	1 cut(s)	258
AoxI	GGCC	4 cut(s)	118, 178, 376, 486
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	1 cut(s)	200
ApoI	RAATTY	3 cut(s)	38, 164, 248
Asp700I	GAANNNNTTC	1 cut(s)	120
AspLEI	GCGC	1 cut(s)	259
AspS9I	GGNCC	3 cut(s)	68, 383, 583
AsuC2I	CCSGG	1 cut(s)	528
AsuHPI	GGTGA	3 cut(s)	43, 313, 656
AvaII	GGWCC	3 cut(s)	68, 383, 583
BaeGI	GKGCMC	1 cut(s)	478
BalI	TGGCCA	1 cut(s)	488
BanI	GGYRCC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	478
BbvI	GCAGC	1 cut(s)	212
BccI	CCATC	1 cut(s)	644
BcnI	CCSGG	1 cut(s)	528
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	2 cut(s)	26, 212
BfmI	CTRYAG	1 cut(s)	46
BfoI	RGCGCY	1 cut(s)	260
BglII	AGATCT	1 cut(s)	655
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	1 cut(s)	528
Bme18I	GGWCC	3 cut(s)	68, 383, 583
BmgT120I	GGNCC	3 cut(s)	68, 383, 583
BmiI	GGNNCC	2 cut(s)	57, 541
BmrFI	CCNGG	1 cut(s)	528
BoxI	GACNNNNGTC	1 cut(s)	498
BpmI	CTGGAG	1 cut(s)	675
BpuMI	CCSGG	1 cut(s)	528
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	3 cut(s)	379, 426, 489
BsaWI	WCCGGW	2 cut(s)	65, 385
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 281, 385
Bse1I	ACTGG	1 cut(s)	379
Bse8I	GATNNNNATC	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	379, 426, 489
BseGI	GGATG	3 cut(s)	315, 523, 557
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	65, 281, 385
BseNI	ACTGG	1 cut(s)	379
BseSI	GKGCMC	1 cut(s)	478
BseXI	GCAGC	1 cut(s)	212
Bsh1236I	CGCG	1 cut(s)	362
BshFI	GGCC	4 cut(s)	120, 180, 378, 488
BshNI	GGYRCC	1 cut(s)	55
BsiHKAI	GWGCWC	1 cut(s)	478
BsiSI	CCGG	3 cut(s)	66, 386, 527
BslFI	GGGAC	2 cut(s)	226, 314
BslI	CCNNNNNNNGG	3 cut(s)	65, 281, 385
BsmAI	GTCTC	1 cut(s)	7
BsmBI	CGTCTC	1 cut(s)	7
BsmFI	GGGAC	2 cut(s)	226, 314
BsmI	GAATGC	1 cut(s)	634
BsnI	GGCC	4 cut(s)	120, 180, 378, 488
Bsp1286I	GDGCHC	1 cut(s)	478
Bsp143I	GATC	4 cut(s)	520, 574, 655, 676
BspACI	CCGC	2 cut(s)	362, 606
BspANI	GGCC	4 cut(s)	120, 180, 378, 488
BspFNI	CGCG	1 cut(s)	362
BspLI	GGNNCC	2 cut(s)	57, 541
BspPI	GGATC	2 cut(s)	569, 671
BspT107I	GGYRCC	1 cut(s)	55
BsrI	ACTGG	1 cut(s)	379
BssECI	CCNNGG	3 cut(s)	379, 426, 489
BssMI	GATC	4 cut(s)	520, 574, 655, 676
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	2 cut(s)	379, 489
Bst4CI	ACNGT	2 cut(s)	185, 417
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	285
BstC8I	GCNNGC	2 cut(s)	60, 283
BstEII	GGTNACC	1 cut(s)	108
BstENI	CCTNNNNNAGG	1 cut(s)	279
BstF5I	GGATG	3 cut(s)	315, 523, 557
BstFNI	CGCG	1 cut(s)	362
BstH2I	RGCGCY	1 cut(s)	260
BstHHI	GCGC	1 cut(s)	259
BstKTI	GATC	4 cut(s)	523, 577, 658, 679
BstMAI	GTCTC	1 cut(s)	7
BstMBI	GATC	4 cut(s)	520, 574, 655, 676
BstMWI	GCNNNNNNNGC	2 cut(s)	671, 680
BstNSI	RCATGY	2 cut(s)	409, 514
BstPAI	GACNNNNGTC	1 cut(s)	498
BstPI	GGTNACC	1 cut(s)	108
BstSCI	CCNGG	1 cut(s)	526
BstSFI	CTRYAG	1 cut(s)	46
BstSLI	GKGCMC	1 cut(s)	478
BstUI	CGCG	1 cut(s)	362
BstV1I	GCAGC	1 cut(s)	212
BstX2I	RGATCY	1 cut(s)	655
BstYI	RGATCY	1 cut(s)	655
BsuRI	GGCC	4 cut(s)	120, 180, 378, 488
BtsCI	GGATG	3 cut(s)	315, 523, 557
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	2 cut(s)	60, 283
CfoI	GCGC	1 cut(s)	259
Cfr13I	GGNCC	3 cut(s)	68, 383, 583
CseI	GACGC	1 cut(s)	274
Csp6I	GTAC	1 cut(s)	186
CviAII	CATG	5 cut(s)	406, 471, 505, 511, 544
CviQI	GTAC	1 cut(s)	186
DpnI	GATC	4 cut(s)	522, 576, 657, 678
DpnII	GATC	4 cut(s)	520, 574, 655, 676
DrdI	GACNNNNNNGTC	2 cut(s)	21, 146
DseDI	GACNNNNNNGTC	2 cut(s)	21, 146
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
EciI	GGCGGA	1 cut(s)	621
Eco130I	CCWWGG	2 cut(s)	379, 489
Eco147I	AGGCCT	1 cut(s)	120
Eco47I	GGWCC	3 cut(s)	68, 383, 583
Eco47III	AGCGCT	1 cut(s)	258
Eco57I	CTGAAG	1 cut(s)	93
Eco91I	GGTNACC	1 cut(s)	108
EcoNI	CCTNNNNNAGG	1 cut(s)	279
EcoO109I	RGGNCCY	1 cut(s)	583
EcoO65I	GGTNACC	1 cut(s)	108
EcoT14I	CCWWGG	2 cut(s)	379, 489
EcoT22I	ATGCAT	1 cut(s)	634
ErhI	CCWWGG	2 cut(s)	379, 489
Esp3I	CGTCTC	1 cut(s)	7
FaeI	CATG	5 cut(s)	409, 474, 508, 514, 547
FalI	AAGNNNNNCTT	2 cut(s)	434, 466
FaqI	GGGAC	2 cut(s)	226, 314
FatI	CATG	5 cut(s)	405, 470, 504, 510, 543
Fnu4HI	GCNGC	1 cut(s)	201
FokI	GGATG	3 cut(s)	302, 530, 564
Fsp4HI	GCNGC	1 cut(s)	201
FspBI	CTAG	2 cut(s)	26, 212
GlaI	GCGC	1 cut(s)	258
GluI	GCNGC	1 cut(s)	201
GsuI	CTGGAG	1 cut(s)	675
HaeII	RGCGCY	1 cut(s)	260
HaeIII	GGCC	4 cut(s)	120, 180, 378, 488
HapII	CCGG	3 cut(s)	66, 386, 527
HgaI	GACGC	1 cut(s)	274
HhaI	GCGC	1 cut(s)	259
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	5 cut(s)	409, 474, 508, 514, 547
Hin6I	GCGC	1 cut(s)	257
HinP1I	GCGC	1 cut(s)	257
HincII	GTYRAC	1 cut(s)	289
HindII	GTYRAC	1 cut(s)	289
HindIII	AAGCTT	2 cut(s)	231, 698
HinfI	GANTC	1 cut(s)	83
HpaII	CCGG	3 cut(s)	66, 386, 527
HphI	GGTGA	3 cut(s)	43, 313, 656
Hpy166II	GTNNAC	2 cut(s)	289, 476
Hpy188I	TCNGA	2 cut(s)	427, 579
Hpy188III	TCNNGA	1 cut(s)	549
Hpy8I	GTNNAC	2 cut(s)	289, 476
Hpy99I	CGWCG	1 cut(s)	21
HpyAV	CCTTC	3 cut(s)	110, 131, 574
HpyCH4III	ACNGT	2 cut(s)	185, 417
HpyCH4V	TGCA	5 cut(s)	62, 300, 405, 476, 632
HpyF10VI	GCNNNNNNNGC	2 cut(s)	671, 680
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	5 cut(s)	409, 474, 508, 514, 547
HspAI	GCGC	1 cut(s)	257
Kzo9I	GATC	4 cut(s)	520, 574, 655, 676
LmnI	GCTCC	1 cut(s)	539
Lsp1109I	GCAGC	1 cut(s)	212
MaeI	CTAG	2 cut(s)	26, 212
MaeIII	GTNAC	4 cut(s)	31, 108, 148, 500
MalI	GATC	4 cut(s)	522, 576, 657, 678
MboI	GATC	4 cut(s)	520, 574, 655, 676
MboII	GAAGA	6 cut(s)	86, 122, 406, 442, 650, 659
MflI	RGATCY	1 cut(s)	655
MhlI	GDGCHC	1 cut(s)	478
MlsI	TGGCCA	1 cut(s)	488
MluCI	AATT	7 cut(s)	38, 78, 164, 248, 261, 366, 609
MluNI	TGGCCA	1 cut(s)	488
MmeI	TCCRAC	2 cut(s)	495, 517
MnlI	CCTC	6 cut(s)	185, 254, 329, 421, 563, 585
Mox20I	TGGCCA	1 cut(s)	488
Mph1103I	ATGCAT	1 cut(s)	634
MroXI	GAANNNNTTC	1 cut(s)	120
MscI	TGGCCA	1 cut(s)	488
MseI	TTAA	1 cut(s)	702
MslI	CAYNNNNRTG	1 cut(s)	509
Msp20I	TGGCCA	1 cut(s)	488
MspI	CCGG	3 cut(s)	66, 386, 527
MspR9I	CCNGG	1 cut(s)	528
Mva1269I	GAATGC	1 cut(s)	634
MvnI	CGCG	1 cut(s)	362
MwoI	GCNNNNNNNGC	2 cut(s)	671, 680
NciI	CCSGG	1 cut(s)	528
NdeII	GATC	4 cut(s)	520, 574, 655, 676
NlaIII	CATG	5 cut(s)	409, 474, 508, 514, 547
NlaIV	GGNNCC	2 cut(s)	57, 541
NmuCI	GTSAC	3 cut(s)	31, 148, 500
NsiI	ATGCAT	1 cut(s)	634
NspI	RCATGY	2 cut(s)	409, 514
PceI	AGGCCT	1 cut(s)	120
PciI	ACATGT	1 cut(s)	510
PctI	GAATGC	1 cut(s)	634
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	83
PflFI	GACNNNGTC	2 cut(s)	21, 275
PkrI	GCNGC	1 cut(s)	202
PpuMI	RGGWCCY	1 cut(s)	583
PscI	ACATGT	1 cut(s)	510
PshAI	GACNNNNGTC	1 cut(s)	498
Psp5II	RGGWCCY	1 cut(s)	583
PspEI	GGTNACC	1 cut(s)	108
PspN4I	GGNNCC	2 cut(s)	57, 541
PspPI	GGNCC	3 cut(s)	68, 383, 583
PspPPI	RGGWCCY	1 cut(s)	583
PsuI	RGATCY	1 cut(s)	655
PsyI	GACNNNGTC	2 cut(s)	21, 275
RsaI	GTAC	1 cut(s)	187
RsaNI	GTAC	1 cut(s)	186
RseI	CAYNNNNRTG	1 cut(s)	509
SaqAI	TTAA	1 cut(s)	702
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	4 cut(s)	520, 574, 655, 676
Sau96I	GGNCC	3 cut(s)	68, 383, 583
ScrFI	CCNGG	1 cut(s)	528
SduI	GDGCHC	1 cut(s)	478
SfcI	CTRYAG	1 cut(s)	46
SinI	GGWCC	3 cut(s)	68, 383, 583
SmiMI	CAYNNNNRTG	1 cut(s)	509
Sse9I	AATT	7 cut(s)	38, 78, 164, 248, 261, 366, 609
SseBI	AGGCCT	1 cut(s)	120
SsiI	CCGC	2 cut(s)	362, 606
SspI	AATATT	2 cut(s)	296, 352
SspMI	CTAG	2 cut(s)	26, 212
StuI	AGGCCT	1 cut(s)	120
StyD4I	CCNGG	1 cut(s)	526
StyI	CCWWGG	2 cut(s)	379, 489
TaaI	ACNGT	2 cut(s)	185, 417
TaqI	TCGA	1 cut(s)	342
TasI	AATT	7 cut(s)	38, 78, 164, 248, 261, 366, 609
TatI	WGTACW	1 cut(s)	185
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	1 cut(s)	702
Tru9I	TTAA	1 cut(s)	702
TscAI	CASTG	1 cut(s)	379
TseFI	GTSAC	3 cut(s)	31, 148, 500
TseI	GCWGC	1 cut(s)	200
Tsp45I	GTSAC	3 cut(s)	31, 148, 500
TspDTI	ATGAA	2 cut(s)	449, 706
TspGWI	ACGGA	1 cut(s)	167
TspRI	CASTG	1 cut(s)	379
Tth111I	GACNNNGTC	2 cut(s)	21, 275
VneI	GTGCAC	1 cut(s)	474
VpaK11BI	GGWCC	3 cut(s)	68, 383, 583
XagI	CCTNNNNNAGG	1 cut(s)	279
XapI	RAATTY	3 cut(s)	38, 164, 248
XceI	RCATGY	2 cut(s)	409, 514
XmnI	GAANNNNTTC	1 cut(s)	120
XspI	CTAG	2 cut(s)	26, 212
Zsp2I	ATGCAT	1 cut(s)	634

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.