Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Reverse (-)

56090518 .. 56092699

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG328000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 927 bp

ATGGCATGTGTTTTTGATGAAGGAAAGTTCCCCATCAAATTCATTACAGAGGAAACTCCATTTTCTTCCTGTTTCGATTCCTCAGCCCCTCCAAAGCCATTGTTAATTGCGACACCAACTGTAAGCGGCACTTATCCAGTACTCTTGCTTCTTCATGGCTTCTACCTCCGCAACTACTTCTACAAAGGAATACTCCAACACATAGCCTCTCATGGATTCATAGTAGTTGGACCTCAGTTATATAGCTTGGTGCCTGCAACTGGACCTGAAGAAATTGAATCAGCTGCAAAAGTGGTAAACTGGTTACCAGAAGGCCTTCAATCTCTTCTGCCTGAAAATGTTGTCGCGGACTTGACCAAATTTGCTCTGTCAGGCCACAGTAGAGGTGGCAAAGCAGCATTTGCATTAGCACTTGGATATGCCAAAGCTGCTTTGTCCCTCAAAGTTTCAGTGCTAATTGGGATTGACCCTGTCGCAGGCGCCAACCAATATTGCAGAACTAATCCCCACATCCTCACCTATGTCCCTCGCTCTTTCGACCTGAATATTCCCGTCGCGGTAATTGGCACTGGCCTTGGACCGGAAAAGAAAAACGATTGCATGTCGCAACCGTGTGCTCCCGAGGGTTTGAACCACAAGGAGTTCTTCAACGAGAGCAAACCCCCATGTGCACATTTTGTGGCCAAGGACTATGGTCACATGGACATGTTGGACGACGATCTACCGGGCGTGGTTGGAGCAATGTCGGGATGTATGTGCAAAAATGGAAGCGGTCCGAAGGACCTAATGAGGAAGTCTGTGGGCGGAATTGTTGTGGCTTTTTTGAATGCATATTTGAATGGTGAAGATGGAGATCTTCTTGCTATTGTAGCTGATCCTGCTCTTTCTCCTGCAAAGCTTGAACCTGTGGAGTTCATCAATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

308

Amino Acids

32.84

Weight (kDa)

5.6

Isoelectric Point (pI)

49.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	3 - 306	2.8e-133	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	250, 479
AccII	CGCG	2 cut(s)	347, 557
AciI	CCGC	6 cut(s)	126, 169, 347, 557, 771, 804
AclWI	GGATC	1 cut(s)	869
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	2 cut(s)	38, 359
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	3 cut(s)	260, 476, 580
AflIII	ACRYGT	1 cut(s)	705
AgsI	TTSAA	7 cut(s)	278, 320, 631, 649, 826, 838, 902
AluBI	AGCT	5 cut(s)	246, 284, 428, 872, 898
AluI	AGCT	5 cut(s)	246, 284, 428, 872, 898
Alw21I	GWGCWC	2 cut(s)	619, 673
Alw44I	GTGCAC	1 cut(s)	669
AlwI	GGATC	1 cut(s)	869
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	4 cut(s)	313, 373, 571, 681
ApaLI	GTGCAC	1 cut(s)	669
ApeKI	GCWGC	3 cut(s)	284, 395, 428
ApoI	RAATTY	2 cut(s)	38, 359
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	5 cut(s)	230, 263, 578, 773, 781
AsuC2I	CCSGG	1 cut(s)	726
AsuHPI	GGTGA	2 cut(s)	508, 854
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	5 cut(s)	230, 263, 578, 773, 781
BaeGI	GKGCMC	1 cut(s)	673
BalI	TGGCCA	1 cut(s)	683
BanI	GGYRCC	2 cut(s)	250, 479
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
Bbv12I	GWGCWC	2 cut(s)	619, 673
BbvCI	CCTCAGC	1 cut(s)	82
BbvI	GCAGC	3 cut(s)	271, 407, 415
BccI	CCATC	2 cut(s)	41, 842
BcnI	CCSGG	1 cut(s)	726
BfoI	RGCGCY	1 cut(s)	483
BglII	AGATCT	1 cut(s)	853
BisI	GCNGC	4 cut(s)	127, 285, 396, 429
BlsI	GCNGC	4 cut(s)	128, 286, 397, 430
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	1 cut(s)	726
Bme18I	GGWCC	5 cut(s)	230, 263, 578, 773, 781
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	5 cut(s)	230, 263, 578, 773, 781
BmiI	GGNNCC	2 cut(s)	252, 481
BmrFI	CCNGG	1 cut(s)	726
BoxI	GACNNNNGTC	1 cut(s)	693
Bpu10I	CCTNAGC	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	726
BsaBI	GATNNNNATC	1 cut(s)	852
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	3 cut(s)	574, 621, 684
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	3 cut(s)	260, 476, 580
Bse1I	ACTGG	4 cut(s)	137, 265, 305, 574
Bse3DI	GCAATG	1 cut(s)	747
Bse8I	GATNNNNATC	1 cut(s)	852
BseDI	CCNNGG	3 cut(s)	574, 621, 684
BseGI	GGATG	2 cut(s)	510, 755
BseJI	GATNNNNATC	1 cut(s)	852
BseLI	CCNNNNNNNGG	3 cut(s)	260, 476, 580
BseMI	GCAATG	1 cut(s)	747
BseMII	CTCAG	2 cut(s)	96, 248
BseNI	ACTGG	4 cut(s)	137, 265, 305, 574
BseSI	GKGCMC	1 cut(s)	673
BseXI	GCAGC	3 cut(s)	271, 407, 415
Bsh1236I	CGCG	2 cut(s)	347, 557
BshFI	GGCC	4 cut(s)	315, 375, 573, 683
BshNI	GGYRCC	2 cut(s)	250, 479
BsiHKAI	GWGCWC	2 cut(s)	619, 673
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	2 cut(s)	581, 725
BslFI	GGGAC	2 cut(s)	421, 509
BslI	CCNNNNNNNGG	3 cut(s)	260, 476, 580
BsmFI	GGGAC	2 cut(s)	421, 509
BsmI	GAATGC	1 cut(s)	832
BsnI	GGCC	4 cut(s)	315, 375, 573, 683
BsoBI	CYCGRG	1 cut(s)	620
Bsp1286I	GDGCHC	2 cut(s)	619, 673
Bsp143I	GATC	3 cut(s)	718, 853, 874
BspACI	CCGC	6 cut(s)	126, 169, 347, 557, 771, 804
BspANI	GGCC	4 cut(s)	315, 375, 573, 683
BspCNI	CTCAG	2 cut(s)	95, 247
BspFNI	CGCG	2 cut(s)	347, 557
BspLI	GGNNCC	2 cut(s)	252, 481
BspPI	GGATC	1 cut(s)	869
BspT107I	GGYRCC	2 cut(s)	250, 479
BsrDI	GCAATG	1 cut(s)	747
BsrI	ACTGG	4 cut(s)	137, 265, 305, 574
BssECI	CCNNGG	3 cut(s)	574, 621, 684
BssMI	GATC	3 cut(s)	718, 853, 874
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	2 cut(s)	574, 684
Bst4CI	ACNGT	3 cut(s)	121, 380, 612
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	255, 478
BstDEI	CTNAG	2 cut(s)	82, 234
BstEII	GGTNACC	1 cut(s)	303
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	2 cut(s)	510, 755
BstFNI	CGCG	2 cut(s)	347, 557
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	3 cut(s)	721, 856, 877
BstMBI	GATC	3 cut(s)	718, 853, 874
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 428, 869, 878
BstNSI	RCATGY	3 cut(s)	9, 604, 709
BstPAI	GACNNNNGTC	1 cut(s)	693
BstPI	GGTNACC	1 cut(s)	303
BstSCI	CCNGG	1 cut(s)	724
BstSLI	GKGCMC	1 cut(s)	673
BstUI	CGCG	2 cut(s)	347, 557
BstV1I	GCAGC	3 cut(s)	271, 407, 415
BstX2I	RGATCY	1 cut(s)	853
BstYI	RGATCY	1 cut(s)	853
BsuRI	GGCC	4 cut(s)	315, 375, 573, 683
BtsCI	GGATG	2 cut(s)	510, 755
BtsIMutI	CAGTG	2 cut(s)	456, 567
Cac8I	GCNNGC	2 cut(s)	255, 478
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	5 cut(s)	230, 263, 578, 773, 781
CpoI	CGGWCCG	1 cut(s)	773
Csp6I	GTAC	1 cut(s)	140
CspI	CGGWCCG	1 cut(s)	773
CviAII	CATG	7 cut(s)	6, 155, 212, 601, 666, 700, 706
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	2 cut(s)	82, 234
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	3 cut(s)	720, 855, 876
DpnII	GATC	3 cut(s)	718, 853, 874
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	819
Eco130I	CCWWGG	2 cut(s)	574, 684
Eco147I	AGGCCT	1 cut(s)	315
Eco47I	GGWCC	5 cut(s)	230, 263, 578, 773, 781
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	620
Eco91I	GGTNACC	1 cut(s)	303
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoO109I	RGGNCCY	1 cut(s)	781
EcoO65I	GGTNACC	1 cut(s)	303
EcoT14I	CCWWGG	2 cut(s)	574, 684
EcoT22I	ATGCAT	1 cut(s)	832
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	2 cut(s)	574, 684
FaeI	CATG	7 cut(s)	9, 158, 215, 604, 669, 703, 709
FalI	AAGNNNNNCTT	4 cut(s)	115, 147, 629, 661
FaqI	GGGAC	2 cut(s)	421, 509
FatI	CATG	7 cut(s)	5, 154, 211, 600, 665, 699, 705
Fnu4HI	GCNGC	4 cut(s)	127, 285, 396, 429
FokI	GGATG	2 cut(s)	497, 762
Fsp4HI	GCNGC	4 cut(s)	127, 285, 396, 429
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	4 cut(s)	127, 285, 396, 429
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	4 cut(s)	315, 375, 573, 683
HapII	CCGG	2 cut(s)	581, 725
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	7 cut(s)	9, 158, 215, 604, 669, 703, 709
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	896
HinfI	GANTC	3 cut(s)	77, 216, 278
HpaII	CCGG	2 cut(s)	581, 725
HphI	GGTGA	2 cut(s)	508, 854
Hpy166II	GTNNAC	2 cut(s)	298, 671
Hpy188I	TCNGA	1 cut(s)	777
Hpy188III	TCNNGA	2 cut(s)	620, 747
Hpy8I	GTNNAC	2 cut(s)	298, 671
Hpy99I	CGWCG	2 cut(s)	557, 719
HpyAV	CCTTC	4 cut(s)	14, 305, 326, 772
HpyCH4III	ACNGT	3 cut(s)	121, 380, 612
HpyCH4V	TGCA	9 cut(s)	257, 287, 404, 495, 600, 671, 759, 830, 893
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 428, 869, 878
HpyF3I	CTNAG	2 cut(s)	82, 234
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	7 cut(s)	9, 158, 215, 604, 669, 703, 709
HspAI	GCGC	1 cut(s)	480
KasI	GGCGCC	1 cut(s)	479
Kzo9I	GATC	3 cut(s)	718, 853, 874
LmnI	GCTCC	2 cut(s)	622, 737
Lsp1109I	GCAGC	3 cut(s)	271, 407, 415
MaeIII	GTNAC	2 cut(s)	303, 695
MalI	GATC	3 cut(s)	720, 855, 876
MboI	GATC	3 cut(s)	718, 853, 874
MboII	GAAGA	7 cut(s)	57, 143, 281, 317, 637, 848, 857
MflI	RGATCY	1 cut(s)	853
MhlI	GDGCHC	2 cut(s)	619, 673
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	7 cut(s)	38, 105, 273, 359, 456, 561, 807
MluNI	TGGCCA	1 cut(s)	683
Mly113I	GGCGCC	1 cut(s)	480
MmeI	TCCRAC	4 cut(s)	208, 220, 690, 715
Mox20I	TGGCCA	1 cut(s)	683
Mph1103I	ATGCAT	1 cut(s)	832
MroXI	GAANNNNTTC	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	704
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	2 cut(s)	581, 725
MspR9I	CCNGG	1 cut(s)	726
Mva1269I	GAATGC	1 cut(s)	832
MvnI	CGCG	2 cut(s)	347, 557
MwoI	GCNNNNNNNGC	4 cut(s)	401, 428, 869, 878
NarI	GGCGCC	1 cut(s)	480
NciI	CCSGG	1 cut(s)	726
NdeII	GATC	3 cut(s)	718, 853, 874
NlaIII	CATG	7 cut(s)	9, 158, 215, 604, 669, 703, 709
NlaIV	GGNNCC	2 cut(s)	252, 481
NmuCI	GTSAC	1 cut(s)	695
NsiI	ATGCAT	1 cut(s)	832
NspI	RCATGY	3 cut(s)	9, 604, 709
PceI	AGGCCT	1 cut(s)	315
PciI	ACATGT	1 cut(s)	705
PctI	GAATGC	1 cut(s)	832
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	77, 216, 278
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	4 cut(s)	128, 286, 397, 430
PluTI	GGCGCC	1 cut(s)	483
PpuMI	RGGWCCY	1 cut(s)	781
PscI	ACATGT	1 cut(s)	705
PshAI	GACNNNNGTC	1 cut(s)	693
Psp5II	RGGWCCY	1 cut(s)	781
PspEI	GGTNACC	1 cut(s)	303
PspN4I	GGNNCC	2 cut(s)	252, 481
PspPI	GGNCC	5 cut(s)	230, 263, 578, 773, 781
PspPPI	RGGWCCY	1 cut(s)	781
PsuI	RGATCY	1 cut(s)	853
PsyI	GACNNNGTC	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	704
Rsr2I	CGGWCCG	1 cut(s)	773
RsrII	CGGWCCG	1 cut(s)	773
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	4 cut(s)	127, 285, 396, 429
Sau3AI	GATC	3 cut(s)	718, 853, 874
Sau96I	GGNCC	5 cut(s)	230, 263, 578, 773, 781
ScaI	AGTACT	1 cut(s)	141
ScrFI	CCNGG	1 cut(s)	726
SduI	GDGCHC	2 cut(s)	619, 673
SfoI	GGCGCC	1 cut(s)	481
SinI	GGWCC	5 cut(s)	230, 263, 578, 773, 781
SmiMI	CAYNNNNRTG	1 cut(s)	704
Sse9I	AATT	7 cut(s)	38, 105, 273, 359, 456, 561, 807
SseBI	AGGCCT	1 cut(s)	315
SsiI	CCGC	6 cut(s)	126, 169, 347, 557, 771, 804
SspDI	GGCGCC	1 cut(s)	479
SspI	AATATT	2 cut(s)	491, 547
StuI	AGGCCT	1 cut(s)	315
StyD4I	CCNGG	1 cut(s)	724
StyI	CCWWGG	2 cut(s)	574, 684
TaaI	ACNGT	3 cut(s)	121, 380, 612
TaqI	TCGA	2 cut(s)	75, 537
TasI	AATT	7 cut(s)	38, 105, 273, 359, 456, 561, 807
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	77, 216, 278
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	2 cut(s)	456, 574
TseFI	GTSAC	1 cut(s)	695
TseI	GCWGC	3 cut(s)	284, 395, 428
Tsp45I	GTSAC	1 cut(s)	695
TspDTI	ATGAA	5 cut(s)	31, 33, 143, 208, 904
TspRI	CASTG	2 cut(s)	456, 574
Tth111I	GACNNNGTC	1 cut(s)	470
VneI	GTGCAC	1 cut(s)	669
VpaK11BI	GGWCC	5 cut(s)	230, 263, 578, 773, 781
XagI	CCTNNNNNAGG	1 cut(s)	474
XapI	RAATTY	2 cut(s)	38, 359
XceI	RCATGY	3 cut(s)	9, 604, 709
XcmI	CCANNNNNNNNNTGG	1 cut(s)	383
XmnI	GAANNNNTTC	1 cut(s)	315
ZrmI	AGTACT	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	832

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.