Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Reverse (-)

33452842 .. 33453543

Gene Structure 702 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0210200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGACCAACCTGGACCTCGAGCACCAACCCACCCAAGACCTCAATAGTTCCCAGGACAACGACGACTTCGACTACTCCAAACGCTCCCAGTGGCTCCGCGCCGCCGTCCTGGGAGCCAACGACGGTCTGATCTCCACCGCGTCGTTAATGATGGGTGTTGGTGCTGTTAAGCAGGACATTAAAGCCATGATACTAACCGGGTGCGCCGGACTAGTAGCCGGTGCCTGCAGCATGGCCATCGGAGAGTTTGTCTCCGTTTACTCCCAGTTGGACATAGAGGTGGCCCAAATGAAGAGAGACAACGACAACAAGAAGAAGCAAAAGAGCCCGGTGGTACACGTGGTAGGAGACGAGGAGGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACGAGAAGACGAGGAGGGAGAAGAGAAGGAGAACTTGCCAAACCCGTTACGAGCAGCAGGTGCATCGGCCCTTGCGTTTGCAGTGGGAGCAATGGTACCACTGCTAGCAGCCTCGTTCATAAGGGAGTATAGGGCGAGGTTGGGAGCTGTGGCGGCGGCAGTGACATTGGCTTTGATGGTGTTTGGGTGGTTGGGAGCAGCTTTGGGGAAGGCACCAGTTCTGAGATCAACGATTAGGGTTTTGGTTGGAGGGTGGATGGCTATGGCTATAACCTTTGGGTTAACCAAGTTGATTGGATCTACTGGACTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

233

Amino Acids

24.76

Weight (kDa)

5.05

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
VIT1	PF01988	32 - 225	3.4e-42	VIT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	437
Acc36I	ACCTGC	1 cut(s)	437
Acc65I	GGTACC	1 cut(s)	484
AccB1I	GGYRCC	3 cut(s)	221, 484, 601
AccII	CGCG	2 cut(s)	99, 140
AciI	CCGC	5 cut(s)	97, 102, 138, 542, 545
AclWI	GGATC	1 cut(s)	694
AcoI	YGGCCR	1 cut(s)	234
AcvI	CACGTG	1 cut(s)	340
AfaI	GTAC	2 cut(s)	336, 486
AflIII	ACRYGT	1 cut(s)	337
AhlI	ACTAGT	1 cut(s)	211
AjnI	CCWGG	3 cut(s)	9, 51, 108
AluBI	AGCT	2 cut(s)	536, 590
AluI	AGCT	2 cut(s)	536, 590
Alw21I	GWGCWC	1 cut(s)	24
Alw26I	GTCTC	3 cut(s)	256, 291, 342
AlwI	GGATC	1 cut(s)	694
Ama87I	CYCGRG	1 cut(s)	17
AoxI	GGCC	3 cut(s)	234, 282, 456
ApeKI	GCWGC	4 cut(s)	228, 443, 497, 587
ArsI	GACNNNNNNTTYG	2 cut(s)	544, 576
Asp718I	GGTACC	1 cut(s)	484
AspLEI	GCGC	2 cut(s)	101, 206
AspS9I	GGNCC	3 cut(s)	13, 283, 457
AsuC2I	CCSGG	2 cut(s)	199, 329
AsuNHI	GCTAGC	1 cut(s)	493
AvaI	CYCGRG	1 cut(s)	17
AvaII	GGWCC	1 cut(s)	13
BalI	TGGCCA	1 cut(s)	236
BanI	GGYRCC	3 cut(s)	221, 484, 601
BanII	GRGCYC	1 cut(s)	329
BbrPI	CACGTG	1 cut(s)	340
BbsI	GAAGAC	1 cut(s)	402
Bbv12I	GWGCWC	1 cut(s)	24
BbvI	GCAGC	4 cut(s)	240, 455, 509, 599
BccI	CCATC	4 cut(s)	145, 245, 559, 640
BceAI	ACGGC	1 cut(s)	89
BcgI	CGANNNNNNTGC	4 cut(s)	220, 254, 435, 469
BciT130I	CCWGG	3 cut(s)	11, 53, 110
BcnI	CCSGG	2 cut(s)	199, 329
BcoDI	GTCTC	3 cut(s)	256, 291, 342
BcuI	ACTAGT	1 cut(s)	211
BfaI	CTAG	2 cut(s)	212, 494
BfmI	CTRYAG	1 cut(s)	226
BfuAI	ACCTGC	1 cut(s)	437
BisI	GCNGC	7 cut(s)	102, 229, 444, 498, 543, 546, 588
BlsI	GCNGC	7 cut(s)	103, 230, 445, 499, 544, 547, 589
Bme1390I	CCNGG	5 cut(s)	11, 53, 110, 199, 329
Bme18I	GGWCC	1 cut(s)	13
BmeT110I	CYCGRG	1 cut(s)	17
BmgT120I	GGNCC	3 cut(s)	13, 283, 457
BmiI	GGNNCC	5 cut(s)	95, 115, 223, 486, 603
BmrFI	CCNGG	5 cut(s)	11, 53, 110, 199, 329
BmrI	ACTGGG	2 cut(s)	82, 259
BmsI	GCATC	1 cut(s)	461
BmtI	GCTAGC	1 cut(s)	497
BmuI	ACTGGG	2 cut(s)	82, 259
BpiI	GAAGAC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
BpuMI	CCSGG	2 cut(s)	199, 329
BsaAI	YACGTR	1 cut(s)	340
BsaJI	CCNNGG	2 cut(s)	51, 109
BsaXI	ACNNNNNCTCC	4 cut(s)	234, 264, 468, 498
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	4 cut(s)	88, 265, 605, 697
Bse3DI	GCAATG	1 cut(s)	486
BseBI	CCWGG	3 cut(s)	11, 53, 110
BseDI	CCNNGG	2 cut(s)	51, 109
BseGI	GGATG	1 cut(s)	651
BseMI	GCAATG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	4 cut(s)	88, 265, 605, 697
BseRI	GAGGAG	2 cut(s)	368, 416
BseXI	GCAGC	4 cut(s)	240, 455, 509, 599
Bsh1236I	CGCG	2 cut(s)	99, 140
BshFI	GGCC	3 cut(s)	236, 284, 458
BshNI	GGYRCC	3 cut(s)	221, 484, 601
BsiHKAI	GWGCWC	1 cut(s)	24
BsiHKCI	CYCGRG	1 cut(s)	17
BsiSI	CCGG	4 cut(s)	198, 207, 219, 329
BsmAI	GTCTC	3 cut(s)	256, 291, 342
BsmBI	CGTCTC	1 cut(s)	342
BsnI	GGCC	3 cut(s)	236, 284, 458
BsoBI	CYCGRG	1 cut(s)	17
Bsp1286I	GDGCHC	2 cut(s)	24, 329
Bsp143I	GATC	3 cut(s)	129, 614, 686
BspACI	CCGC	5 cut(s)	97, 102, 138, 542, 545
BspANI	GGCC	3 cut(s)	236, 284, 458
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	2 cut(s)	99, 140
BspLI	GGNNCC	5 cut(s)	95, 115, 223, 486, 603
BspMAI	CTGCAG	1 cut(s)	230
BspMI	ACCTGC	1 cut(s)	437
BspOI	GCTAGC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	694
BspT107I	GGYRCC	3 cut(s)	221, 484, 601
BsrDI	GCAATG	1 cut(s)	486
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	4 cut(s)	88, 265, 605, 697
BssAI	RCCGGY	1 cut(s)	218
BssECI	CCNNGG	2 cut(s)	51, 109
BssMI	GATC	3 cut(s)	129, 614, 686
Bst2UI	CCWGG	3 cut(s)	11, 53, 110
Bst4CI	ACNGT	2 cut(s)	125, 699
Bst6I	CTCTTC	3 cut(s)	287, 357, 405
BstAPI	GCANNNNNTGC	1 cut(s)	449
BstBAI	YACGTR	1 cut(s)	340
BstC8I	GCNNGC	2 cut(s)	226, 495
BstDEI	CTNAG	1 cut(s)	611
BstF5I	GGATG	1 cut(s)	651
BstFNI	CGCG	2 cut(s)	99, 140
BstHHI	GCGC	2 cut(s)	101, 206
BstKTI	GATC	3 cut(s)	132, 617, 689
BstMAI	GTCTC	3 cut(s)	256, 291, 342
BstMBI	GATC	3 cut(s)	129, 614, 686
BstMWI	GCNNNNNNNGC	3 cut(s)	449, 476, 542
BstNI	CCWGG	3 cut(s)	11, 53, 110
BstSCI	CCNGG	5 cut(s)	9, 51, 108, 197, 327
BstSFI	CTRYAG	1 cut(s)	226
BstUI	CGCG	2 cut(s)	99, 140
BstV1I	GCAGC	4 cut(s)	240, 455, 509, 599
BstV2I	GAAGAC	1 cut(s)	402
BstX2I	RGATCY	1 cut(s)	686
BstYI	RGATCY	1 cut(s)	686
BsuRI	GGCC	3 cut(s)	236, 284, 458
BtsCI	GGATG	1 cut(s)	651
BtsI	GCAGTG	3 cut(s)	477, 488, 555
BtsIMutI	CAGTG	4 cut(s)	95, 477, 488, 555
BveI	ACCTGC	1 cut(s)	437
Cac8I	GCNNGC	2 cut(s)	226, 495
CfoI	GCGC	2 cut(s)	101, 206
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	3 cut(s)	13, 283, 457
CseI	GACGC	1 cut(s)	129
Csp6I	GTAC	2 cut(s)	335, 485
CviAII	CATG	2 cut(s)	187, 232
CviQI	GTAC	2 cut(s)	335, 485
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	3 cut(s)	131, 616, 688
DpnII	GATC	3 cut(s)	129, 614, 686
EaeI	YGGCCR	1 cut(s)	234
Eam1104I	CTCTTC	3 cut(s)	287, 357, 405
EarI	CTCTTC	3 cut(s)	287, 357, 405
Eco24I	GRGCYC	1 cut(s)	329
Eco47I	GGWCC	1 cut(s)	13
Eco72I	CACGTG	1 cut(s)	340
Eco88I	CYCGRG	1 cut(s)	17
EcoRII	CCWGG	3 cut(s)	9, 51, 108
EcoT38I	GRGCYC	1 cut(s)	329
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	190, 235
FaiI	YATR	7 cut(s)	188, 233, 275, 509, 519, 653, 659
FalI	AAGNNNNNCTT	4 cut(s)	359, 391, 407, 439
FatI	CATG	2 cut(s)	186, 231
Fnu4HI	GCNGC	7 cut(s)	102, 229, 444, 498, 543, 546, 588
FokI	GGATG	1 cut(s)	658
FriOI	GRGCYC	1 cut(s)	329
Fsp4HI	GCNGC	7 cut(s)	102, 229, 444, 498, 543, 546, 588
FspBI	CTAG	2 cut(s)	212, 494
GlaI	GCGC	2 cut(s)	100, 205
GluI	GCNGC	7 cut(s)	102, 229, 444, 498, 543, 546, 588
HaeIII	GGCC	3 cut(s)	236, 284, 458
HapII	CCGG	4 cut(s)	198, 207, 219, 329
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	2 cut(s)	101, 206
Hin1II	CATG	2 cut(s)	190, 235
Hin6I	GCGC	2 cut(s)	99, 204
HinP1I	GCGC	2 cut(s)	99, 204
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HpaI	GTTAAC	1 cut(s)	672
HpaII	CCGG	4 cut(s)	198, 207, 219, 329
Hpy166II	GTNNAC	3 cut(s)	259, 337, 672
Hpy188I	TCNGA	3 cut(s)	129, 242, 612
Hpy8I	GTNNAC	3 cut(s)	259, 337, 672
Hpy99I	CGWCG	3 cut(s)	65, 125, 145
HpyAV	CCTTC	3 cut(s)	361, 409, 592
HpyCH4III	ACNGT	2 cut(s)	125, 699
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	3 cut(s)	228, 452, 470
HpyF10VI	GCNNNNNNNGC	3 cut(s)	449, 476, 542
HpyF3I	CTNAG	1 cut(s)	611
HpySE526I	ACGT	1 cut(s)	339
Hsp92II	CATG	2 cut(s)	190, 235
HspAI	GCGC	2 cut(s)	99, 204
KpnI	GGTACC	1 cut(s)	488
KspAI	GTTAAC	1 cut(s)	672
Kzo9I	GATC	3 cut(s)	129, 614, 686
LmnI	GCTCC	6 cut(s)	89, 99, 113, 476, 533, 584
Lsp1109I	GCAGC	4 cut(s)	240, 455, 509, 599
LweI	GCATC	1 cut(s)	461
MaeI	CTAG	2 cut(s)	212, 494
MaeII	ACGT	1 cut(s)	339
MaeIII	GTNAC	3 cut(s)	387, 435, 550
MalI	GATC	3 cut(s)	131, 616, 688
MboI	GATC	3 cut(s)	129, 614, 686
MboII	GAAGA	5 cut(s)	304, 325, 374, 407, 422
MflI	RGATCY	1 cut(s)	686
MhlI	GDGCHC	2 cut(s)	24, 329
MlsI	TGGCCA	1 cut(s)	236
MluNI	TGGCCA	1 cut(s)	236
MmeI	TCCRAC	2 cut(s)	249, 616
Mox20I	TGGCCA	1 cut(s)	236
MscI	TGGCCA	1 cut(s)	236
MseI	TTAA	4 cut(s)	146, 168, 180, 671
MslI	CAYNNNNRTG	1 cut(s)	278
Msp20I	TGGCCA	1 cut(s)	236
MspI	CCGG	4 cut(s)	198, 207, 219, 329
MspR9I	CCNGG	5 cut(s)	11, 53, 110, 199, 329
MvaI	CCWGG	3 cut(s)	11, 53, 110
MvnI	CGCG	2 cut(s)	99, 140
MwoI	GCNNNNNNNGC	3 cut(s)	449, 476, 542
NciI	CCSGG	2 cut(s)	199, 329
NdeII	GATC	3 cut(s)	129, 614, 686
NheI	GCTAGC	1 cut(s)	493
NlaIII	CATG	2 cut(s)	190, 235
NlaIV	GGNNCC	5 cut(s)	95, 115, 223, 486, 603
NmuCI	GTSAC	1 cut(s)	550
PaeR7I	CTCGAG	1 cut(s)	17
PaqCI	CACCTGC	1 cut(s)	437
PcsI	WCGNNNNNNNCGW	2 cut(s)	66, 461
PkrI	GCNGC	7 cut(s)	103, 230, 445, 499, 544, 547, 589
PmaCI	CACGTG	1 cut(s)	340
PmlI	CACGTG	1 cut(s)	340
Ppu21I	YACGTR	1 cut(s)	340
Psp6I	CCWGG	3 cut(s)	9, 51, 108
PspCI	CACGTG	1 cut(s)	340
PspGI	CCWGG	3 cut(s)	9, 51, 108
PspN4I	GGNNCC	5 cut(s)	95, 115, 223, 486, 603
PspPI	GGNCC	3 cut(s)	13, 283, 457
PspXI	VCTCGAGB	1 cut(s)	17
PstI	CTGCAG	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	686
RsaI	GTAC	2 cut(s)	336, 486
RsaNI	GTAC	2 cut(s)	335, 485
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	4 cut(s)	146, 168, 180, 671
SatI	GCNGC	7 cut(s)	102, 229, 444, 498, 543, 546, 588
Sau3AI	GATC	3 cut(s)	129, 614, 686
Sau96I	GGNCC	3 cut(s)	13, 283, 457
ScrFI	CCNGG	5 cut(s)	11, 53, 110, 199, 329
SduI	GDGCHC	2 cut(s)	24, 329
SfaNI	GCATC	1 cut(s)	461
SfcI	CTRYAG	1 cut(s)	226
Sfr274I	CTCGAG	1 cut(s)	17
SinI	GGWCC	1 cut(s)	13
SlaI	CTCGAG	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	278
SmlI	CTYRAG	1 cut(s)	17
SmoI	CTYRAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	211
SsiI	CCGC	5 cut(s)	97, 102, 138, 542, 545
SspMI	CTAG	2 cut(s)	212, 494
StyD4I	CCNGG	5 cut(s)	9, 51, 108, 197, 327
TaaI	ACNGT	2 cut(s)	125, 699
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	2 cut(s)	18, 69
TauI	GCSGC	3 cut(s)	104, 545, 548
Tru1I	TTAA	4 cut(s)	146, 168, 180, 671
Tru9I	TTAA	4 cut(s)	146, 168, 180, 671
TscAI	CASTG	4 cut(s)	95, 477, 495, 555
TseFI	GTSAC	1 cut(s)	550
TseI	GCWGC	4 cut(s)	228, 443, 497, 587
Tsp45I	GTSAC	1 cut(s)	550
TspDTI	ATGAA	2 cut(s)	305, 496
TspGWI	ACGGA	1 cut(s)	244
TspRI	CASTG	4 cut(s)	95, 477, 495, 555
VpaK11BI	GGWCC	1 cut(s)	13
XhoI	CTCGAG	1 cut(s)	17
XspI	CTAG	2 cut(s)	212, 494

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.