Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Reverse (-)

39713593 .. 39716581

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1279400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGTGTTACTCAAGGGCAAGGCCTTTCCCTTTCAATTGCCTTGTTCTTATTAGGCAAGGAAATTGCACCTTCAAATGCATCACAGAGGAGACGCCACTGTCTTCCTGCTTTGATTCTTCAGCACCTCCAAAGCCCTTGTTCATCGTTACACCGACAGTTGCCGGCACCTACCCTGTAATCTTGCTTCATCACGGCTTCTACCTCAGCAACTATTTCTATAAAGAGTTACTCCAGCACATAGCTTCTCATGGATTCGTAGCTGTAGCACCTCAGTTATGTGGGTATGTACCTCCAAGTGGACCTGAGGAAATCGAATTAGGGGCAAAAGTCATAAACTGGTTACCAAAAGGCCTCCAATCCCTGCTGCCAGAAAATGTTGTAGCAGACTTCACCAAATTTGCTCTAGCAGGCCGCAGCAAAGGTGGGAAAACAGCATTTGCAACAGCACTTGGGCATGCCAAATCTTCACTCTCCCTCAAAATATCAGTCCTCATAGGCATTGACCCTAACCACAAGGAGTTCTTCTATGAATGCAAACCCCCATGTGCACATTTTGTTGTCAAGGACTATGGGCACATGGACATGTTGGACGACGATCCACAGGGCATAGTTGGGGCATTGTTGGGGTGCATGTGTAAAAATGGGAAGGGACCGAGGGAGCTAATGAGGAAGGCTGTGGGTGAGATTGTTGTGGCATTTTTGAAGGCTTATTTGAATGGTGATGATAGGGATTTGGTTGCCATTGTTGGTGATCCTGATATTTCTCCAGCAAAGCTTGATCATGTGGAGTTCATTAGGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

268

Amino Acids

29.14

Weight (kDa)

7.08

Isoelectric Point (pI)

41.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	19 - 169	1.3e-55	Chlorophyllase
Chlorophyllase	PF07224	170 - 265	1.3e-37	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	97
AccB1I	GGYRCC	1 cut(s)	164
AciI	CCGC	1 cut(s)	412
AclWI	GGATC	2 cut(s)	590, 746
AcsI	RAATTY	1 cut(s)	395
AcuI	CTGAAG	1 cut(s)	102
AcyI	GRCGYC	1 cut(s)	92
AfaI	GTAC	1 cut(s)	288
AfiI	CCNNNNNNNGG	1 cut(s)	296
AflIII	ACRYGT	1 cut(s)	582
AgsI	TTSAA	4 cut(s)	34, 73, 703, 715
AluBI	AGCT	4 cut(s)	242, 260, 661, 775
AluI	AGCT	4 cut(s)	242, 260, 661, 775
Alw21I	GWGCWC	1 cut(s)	550
Alw26I	GTCTC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	546
AlwI	GGATC	2 cut(s)	590, 746
AoxI	GGCC	3 cut(s)	20, 349, 409
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	364, 414
ApoI	RAATTY	1 cut(s)	395
ArsI	GACNNNNNNTTYG	2 cut(s)	471, 503
AspS9I	GGNCC	2 cut(s)	299, 650
AsuHPI	GGTGA	4 cut(s)	382, 692, 731, 761
AvaII	GGWCC	2 cut(s)	299, 650
AxyI	CCTNAGG	1 cut(s)	303
BaeGI	GKGCMC	2 cut(s)	550, 576
BanI	GGYRCC	1 cut(s)	164
BarI	GAAGNNNNNNTAC	2 cut(s)	168, 200
BbsI	GAAGAC	1 cut(s)	93
Bbv12I	GWGCWC	1 cut(s)	550
BbvCI	CCTCAGC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	351, 426
BceAI	ACGGC	1 cut(s)	208
BclI	TGATCA	1 cut(s)	778
BcoDI	GTCTC	1 cut(s)	83
BfaI	CTAG	1 cut(s)	404
BfmI	CTRYAG	1 cut(s)	261
BisI	GCNGC	3 cut(s)	365, 412, 415
BlsI	GCNGC	3 cut(s)	366, 413, 416
Bme18I	GGWCC	2 cut(s)	299, 650
BmgT120I	GGNCC	2 cut(s)	299, 650
BmiI	GGNNCC	2 cut(s)	166, 651
BmsI	GCATC	1 cut(s)	87
BpiI	GAAGAC	1 cut(s)	93
BpmI	CTGGAG	2 cut(s)	215, 750
Bpu10I	CCTNAGC	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	92
BsaJI	CCNNGG	1 cut(s)	653
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
Bse118I	RCCGGY	1 cut(s)	161
Bse1I	ACTGG	1 cut(s)	341
Bse21I	CCTNAGG	1 cut(s)	303
BseDI	CCNNGG	1 cut(s)	653
BseLI	CCNNNNNNNGG	1 cut(s)	296
BseMII	CTCAG	3 cut(s)	217, 284, 294
BseNI	ACTGG	1 cut(s)	341
BseRI	GAGGAG	1 cut(s)	101
BseSI	GKGCMC	2 cut(s)	550, 576
BseXI	GCAGC	2 cut(s)	351, 426
BshFI	GGCC	3 cut(s)	22, 351, 411
BshNI	GGYRCC	1 cut(s)	164
BsiHKAI	GWGCWC	1 cut(s)	550
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	1 cut(s)	663
BslI	CCNNNNNNNGG	1 cut(s)	296
BsmAI	GTCTC	1 cut(s)	83
BsmBI	CGTCTC	1 cut(s)	83
BsmFI	GGGAC	1 cut(s)	663
BsmI	GAATGC	1 cut(s)	536
BsnI	GGCC	3 cut(s)	22, 351, 411
Bsp1286I	GDGCHC	2 cut(s)	550, 576
Bsp143I	GATC	3 cut(s)	595, 751, 778
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	3 cut(s)	22, 351, 411
BspCNI	CTCAG	3 cut(s)	216, 283, 295
BspLI	GGNNCC	2 cut(s)	166, 651
BspPI	GGATC	2 cut(s)	590, 746
BspT107I	GGYRCC	1 cut(s)	164
BsrFI	RCCGGY	1 cut(s)	161
BsrI	ACTGG	1 cut(s)	341
BssAI	RCCGGY	1 cut(s)	161
BssECI	CCNNGG	1 cut(s)	653
BssMI	GATC	3 cut(s)	595, 751, 778
BssNI	GRCGYC	1 cut(s)	92
Bst4CI	ACNGT	2 cut(s)	99, 157
BstACI	GRCGYC	1 cut(s)	92
BstC8I	GCNNGC	3 cut(s)	163, 409, 456
BstDEI	CTNAG	3 cut(s)	203, 270, 303
BstEII	GGTNACC	1 cut(s)	339
BstKTI	GATC	3 cut(s)	598, 754, 781
BstMAI	GTCTC	1 cut(s)	83
BstMBI	GATC	3 cut(s)	595, 751, 778
BstNSI	RCATGY	3 cut(s)	458, 586, 634
BstPI	GGTNACC	1 cut(s)	339
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	2 cut(s)	550, 576
BstV1I	GCAGC	2 cut(s)	351, 426
BstV2I	GAAGAC	1 cut(s)	93
Bsu36I	CCTNAGG	1 cut(s)	303
BsuRI	GGCC	3 cut(s)	22, 351, 411
BtsIMutI	CAGTG	1 cut(s)	95
Cac8I	GCNNGC	3 cut(s)	163, 409, 456
Cfr10I	RCCGGY	1 cut(s)	161
Cfr13I	GGNCC	2 cut(s)	299, 650
CseI	GACGC	1 cut(s)	100
Csp6I	GTAC	1 cut(s)	287
CviAII	CATG	7 cut(s)	248, 455, 543, 577, 583, 631, 782
CviQI	GTAC	1 cut(s)	287
DdeI	CTNAG	3 cut(s)	203, 270, 303
DpnI	GATC	3 cut(s)	597, 753, 780
DpnII	GATC	3 cut(s)	595, 751, 778
DrdI	GACNNNNNNGTC	1 cut(s)	97
DseDI	GACNNNNNNGTC	1 cut(s)	97
Eco147I	AGGCCT	2 cut(s)	22, 351
Eco47I	GGWCC	2 cut(s)	299, 650
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	303
Eco91I	GGTNACC	1 cut(s)	339
EcoO65I	GGTNACC	1 cut(s)	339
EcoT22I	ATGCAT	1 cut(s)	80
Esp3I	CGTCTC	1 cut(s)	83
FaeI	CATG	7 cut(s)	251, 458, 546, 580, 586, 634, 785
FalI	AAGNNNNNCTT	2 cut(s)	506, 538
FaqI	GGGAC	1 cut(s)	663
FatI	CATG	7 cut(s)	247, 454, 542, 576, 582, 630, 781
FbaI	TGATCA	1 cut(s)	778
Fnu4HI	GCNGC	3 cut(s)	365, 412, 415
Fsp4HI	GCNGC	3 cut(s)	365, 412, 415
FspBI	CTAG	1 cut(s)	404
GluI	GCNGC	3 cut(s)	365, 412, 415
GsuI	CTGGAG	2 cut(s)	215, 750
HaeIII	GGCC	3 cut(s)	22, 351, 411
HapII	CCGG	1 cut(s)	162
HgaI	GACGC	1 cut(s)	100
Hin1I	GRCGYC	1 cut(s)	92
Hin1II	CATG	7 cut(s)	251, 458, 546, 580, 586, 634, 785
HindIII	AAGCTT	1 cut(s)	773
HinfI	GANTC	2 cut(s)	113, 252
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	4 cut(s)	382, 692, 731, 761
Hpy166II	GTNNAC	2 cut(s)	299, 548
Hpy188III	TCNNGA	1 cut(s)	755
Hpy8I	GTNNAC	2 cut(s)	299, 548
Hpy99I	CGWCG	1 cut(s)	596
HpyAV	CCTTC	4 cut(s)	79, 640, 664, 697
HpyCH4III	ACNGT	2 cut(s)	99, 157
HpyCH4V	TGCA	6 cut(s)	66, 78, 440, 534, 548, 630
HpyF3I	CTNAG	3 cut(s)	203, 270, 303
Hsp92I	GRCGYC	1 cut(s)	92
Hsp92II	CATG	7 cut(s)	251, 458, 546, 580, 586, 634, 785
KroI	GCCGGC	1 cut(s)	161
KroNI	GCCGGC	1 cut(s)	163
Ksp22I	TGATCA	1 cut(s)	778
Kzo9I	GATC	3 cut(s)	595, 751, 778
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	2 cut(s)	351, 426
LweI	GCATC	1 cut(s)	87
MaeI	CTAG	1 cut(s)	404
MaeIII	GTNAC	4 cut(s)	5, 145, 225, 339
MalI	GATC	3 cut(s)	597, 753, 780
MboI	GATC	3 cut(s)	595, 751, 778
MboII	GAAGA	4 cut(s)	93, 108, 456, 514
MfeI	CAATTG	1 cut(s)	34
MhlI	GDGCHC	2 cut(s)	550, 576
MluCI	AATT	4 cut(s)	34, 61, 314, 395
MmeI	TCCRAC	1 cut(s)	567
Mph1103I	ATGCAT	1 cut(s)	80
MroNI	GCCGGC	1 cut(s)	161
MslI	CAYNNNNRTG	1 cut(s)	581
MspI	CCGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	34
Mva1269I	GAATGC	1 cut(s)	536
NaeI	GCCGGC	1 cut(s)	163
NdeII	GATC	3 cut(s)	595, 751, 778
NgoMIV	GCCGGC	1 cut(s)	161
NlaIII	CATG	7 cut(s)	251, 458, 546, 580, 586, 634, 785
NlaIV	GGNNCC	2 cut(s)	166, 651
NsiI	ATGCAT	1 cut(s)	80
NspI	RCATGY	3 cut(s)	458, 586, 634
PaeI	GCATGC	1 cut(s)	458
PceI	AGGCCT	2 cut(s)	22, 351
PciI	ACATGT	1 cut(s)	582
PctI	GAATGC	1 cut(s)	536
PdiI	GCCGGC	1 cut(s)	163
PfeI	GAWTC	2 cut(s)	113, 252
PkrI	GCNGC	3 cut(s)	366, 413, 416
PscI	ACATGT	1 cut(s)	582
PspEI	GGTNACC	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	166, 651
PspPI	GGNCC	2 cut(s)	299, 650
RsaI	GTAC	1 cut(s)	288
RsaNI	GTAC	1 cut(s)	287
RseI	CAYNNNNRTG	1 cut(s)	581
SatI	GCNGC	3 cut(s)	365, 412, 415
Sau3AI	GATC	3 cut(s)	595, 751, 778
Sau96I	GGNCC	2 cut(s)	299, 650
SduI	GDGCHC	2 cut(s)	550, 576
SfaNI	GCATC	1 cut(s)	87
SfcI	CTRYAG	1 cut(s)	261
SinI	GGWCC	2 cut(s)	299, 650
SmiMI	CAYNNNNRTG	1 cut(s)	581
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
SphI	GCATGC	1 cut(s)	458
Sse9I	AATT	4 cut(s)	34, 61, 314, 395
SseBI	AGGCCT	2 cut(s)	22, 351
SsiI	CCGC	1 cut(s)	412
SspMI	CTAG	1 cut(s)	404
StuI	AGGCCT	2 cut(s)	22, 351
TaaI	ACNGT	2 cut(s)	99, 157
TaqI	TCGA	1 cut(s)	312
TaqII	GACCGA	1 cut(s)	667
TasI	AATT	4 cut(s)	34, 61, 314, 395
TauI	GCSGC	1 cut(s)	414
TfiI	GAWTC	2 cut(s)	113, 252
TscAI	CASTG	1 cut(s)	102
TseI	GCWGC	2 cut(s)	364, 414
TspDTI	ATGAA	4 cut(s)	130, 176, 543, 781
TspRI	CASTG	1 cut(s)	102
VneI	GTGCAC	1 cut(s)	546
VpaK11BI	GGWCC	2 cut(s)	299, 650
XapI	RAATTY	1 cut(s)	395
XceI	RCATGY	3 cut(s)	458, 586, 634
XspI	CTAG	1 cut(s)	404
Zsp2I	ATGCAT	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.