Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Reverse (-)

52495587 .. 52673715

Gene Structure 178129 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG321100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 915 bp

ATGGCATCTGTTTTTGATGAAGGAAAGTTCCCCATCAAATTCATTACAGAGGAAACTCCATTTTCTTCCTGTTTCGATTCCTCAGCCCCTCCAAAGCCATTGTTAATTGCGACACCAACTGTAAGCGGCACTTATCCAGTACTCTTGCTTCTTCATGGCTTCTACCTCCGCAACTACTTCTACAAAGGAATACTCCAACACATAGCCTCTCATGGATTCATAGTAGTTGGACCTCAGTTATATAGCTTGGTGCCTGCAACTGGACCTGAAGAAATTGAATCAGCTGCAAAAGTGGTAATCTGGTTACCAGAAGGCCTTCAATCTCTTCTGCCTGAAAATGTTGTCGCGGACTTGACCAAATTTGCTCTGTCAGGCCACAGTAGAGGAGGCAAAGCAGCGTTTGCACTAGCACTTGGATATGCCAAAGCTTCTTTGTCCCTCAAATTTTCAGTGCTAATTGGGATTGACCCTGTCGCGGGCGCCAACCAATATTGCAGAACTAATCCCCACATCCTCACCTATGTCCCTCGCTCTTTTGATCTGAACATTCCCGTCGCGGTAATTGGCACAGGCCTTGAACCGGAAAAGAAGAACGAGCCGTGTGCTCCCGAGGGTTTGAACCACAAGGAGTTCTACAATGAGAGCAAACCCCCATGTGCACATTTTGTGGCCAAGGACTATGGTCACATGGACATGTTGGACGACGATCTACCGGGCCTGGTTGGAGCCATGTCGGGATGTATGTGTAAAAATGGAAGCGGTCCGAAGGACCTAATGAGGAAGTCTGTGGGCGGAATTGTTGTGGCTTTTTTGAATGCATATTTGAATGGTGAAGATGTAGATCTTCTTGCTATTGTAGCTGATCCTGCTCTTTCTCCTGCAAAGCTTGAACCTGTGGAGTTCATCAATGCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

304

Amino Acids

32.59

Weight (kDa)

5.48

Isoelectric Point (pI)

47.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Chlorophyllase	PF07224	2 - 302	8.5e-130	Chlorophyllase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	250, 479
AccII	CGCG	3 cut(s)	347, 476, 557
AciI	CCGC	7 cut(s)	126, 169, 347, 476, 557, 759, 792
AclWI	GGATC	1 cut(s)	857
AcoI	YGGCCR	1 cut(s)	669
AcsI	RAATTY	3 cut(s)	38, 359, 443
AcuI	CTGAAG	1 cut(s)	288
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	1 cut(s)	141
AfiI	CCNNNNNNNGG	4 cut(s)	260, 475, 476, 580
AflIII	ACRYGT	1 cut(s)	693
AgsI	TTSAA	7 cut(s)	278, 320, 578, 619, 814, 826, 890
AjnI	CCWGG	1 cut(s)	717
AluBI	AGCT	5 cut(s)	246, 284, 428, 860, 886
AluI	AGCT	5 cut(s)	246, 284, 428, 860, 886
Alw21I	GWGCWC	2 cut(s)	607, 661
Alw44I	GTGCAC	1 cut(s)	657
AlwI	GGATC	1 cut(s)	857
Ama87I	CYCGRG	1 cut(s)	608
AoxI	GGCC	5 cut(s)	313, 373, 571, 669, 715
ApaLI	GTGCAC	1 cut(s)	657
ApeKI	GCWGC	2 cut(s)	284, 395
ApoI	RAATTY	3 cut(s)	38, 359, 443
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	5 cut(s)	230, 263, 715, 761, 769
AsuC2I	CCSGG	1 cut(s)	714
AsuHPI	GGTGA	2 cut(s)	508, 842
AvaI	CYCGRG	1 cut(s)	608
AvaII	GGWCC	4 cut(s)	230, 263, 761, 769
BaeGI	GKGCMC	1 cut(s)	661
BalI	TGGCCA	1 cut(s)	671
BanI	GGYRCC	2 cut(s)	250, 479
BarI	GAAGNNNNNNTAC	2 cut(s)	132, 164
Bbv12I	GWGCWC	2 cut(s)	607, 661
BbvCI	CCTCAGC	1 cut(s)	82
BbvI	GCAGC	2 cut(s)	271, 407
BccI	CCATC	1 cut(s)	41
BceAI	ACGGC	1 cut(s)	583
BcgI	CGANNNNNNTGC	2 cut(s)	584, 618
BciT130I	CCWGG	1 cut(s)	719
BcnI	CCSGG	1 cut(s)	714
BfaI	CTAG	1 cut(s)	407
BfoI	RGCGCY	1 cut(s)	483
BglII	AGATCT	1 cut(s)	841
BisI	GCNGC	3 cut(s)	127, 285, 396
BlsI	GCNGC	3 cut(s)	128, 286, 397
BmcAI	AGTACT	1 cut(s)	141
Bme1390I	CCNGG	2 cut(s)	714, 719
Bme18I	GGWCC	4 cut(s)	230, 263, 761, 769
BmeT110I	CYCGRG	1 cut(s)	608
BmgT120I	GGNCC	5 cut(s)	230, 263, 715, 761, 769
BmiI	GGNNCC	3 cut(s)	252, 481, 727
BmrFI	CCNGG	2 cut(s)	714, 719
BmsI	GCATC	1 cut(s)	14
BoxI	GACNNNNGTC	1 cut(s)	681
Bpu10I	CCTNAGC	1 cut(s)	82
BpuMI	CCSGG	1 cut(s)	714
BsaBI	GATNNNNATC	1 cut(s)	840
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	609, 672
BsaWI	WCCGGW	1 cut(s)	580
Bsc4I	CCNNNNNNNGG	4 cut(s)	260, 475, 476, 580
Bse1I	ACTGG	2 cut(s)	137, 265
Bse8I	GATNNNNATC	1 cut(s)	840
BseBI	CCWGG	1 cut(s)	719
BseDI	CCNNGG	2 cut(s)	609, 672
BseGI	GGATG	2 cut(s)	510, 743
BseJI	GATNNNNATC	1 cut(s)	840
BseLI	CCNNNNNNNGG	4 cut(s)	260, 475, 476, 580
BseMII	CTCAG	2 cut(s)	96, 248
BseNI	ACTGG	2 cut(s)	137, 265
BseRI	GAGGAG	1 cut(s)	399
BseSI	GKGCMC	1 cut(s)	661
BseXI	GCAGC	2 cut(s)	271, 407
Bsh1236I	CGCG	3 cut(s)	347, 476, 557
BshFI	GGCC	5 cut(s)	315, 375, 573, 671, 717
BshNI	GGYRCC	2 cut(s)	250, 479
BsiHKAI	GWGCWC	2 cut(s)	607, 661
BsiHKCI	CYCGRG	1 cut(s)	608
BsiSI	CCGG	2 cut(s)	581, 713
BslFI	GGGAC	2 cut(s)	421, 509
BslI	CCNNNNNNNGG	4 cut(s)	260, 475, 476, 580
BsmFI	GGGAC	2 cut(s)	421, 509
BsmI	GAATGC	1 cut(s)	820
BsnI	GGCC	5 cut(s)	315, 375, 573, 671, 717
BsoBI	CYCGRG	1 cut(s)	608
Bsp1286I	GDGCHC	2 cut(s)	607, 661
Bsp143I	GATC	4 cut(s)	538, 706, 841, 862
BspACI	CCGC	7 cut(s)	126, 169, 347, 476, 557, 759, 792
BspANI	GGCC	5 cut(s)	315, 375, 573, 671, 717
BspCNI	CTCAG	2 cut(s)	95, 247
BspFNI	CGCG	3 cut(s)	347, 476, 557
BspLI	GGNNCC	3 cut(s)	252, 481, 727
BspPI	GGATC	1 cut(s)	857
BspT107I	GGYRCC	2 cut(s)	250, 479
BsrI	ACTGG	2 cut(s)	137, 265
BssECI	CCNNGG	2 cut(s)	609, 672
BssMI	GATC	4 cut(s)	538, 706, 841, 862
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	672
Bst2UI	CCWGG	1 cut(s)	719
Bst4CI	ACNGT	2 cut(s)	121, 380
Bst6I	CTCTTC	1 cut(s)	330
BstACI	GRCGYC	1 cut(s)	480
BstAPI	GCANNNNNTGC	1 cut(s)	401
BstC8I	GCNNGC	2 cut(s)	255, 478
BstDEI	CTNAG	2 cut(s)	82, 234
BstEII	GGTNACC	1 cut(s)	303
BstF5I	GGATG	2 cut(s)	510, 743
BstFNI	CGCG	3 cut(s)	347, 476, 557
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	4 cut(s)	541, 709, 844, 865
BstMBI	GATC	4 cut(s)	538, 706, 841, 862
BstMWI	GCNNNNNNNGC	3 cut(s)	401, 857, 866
BstNI	CCWGG	1 cut(s)	719
BstNSI	RCATGY	1 cut(s)	697
BstPAI	GACNNNNGTC	1 cut(s)	681
BstPI	GGTNACC	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	712, 717
BstSLI	GKGCMC	1 cut(s)	661
BstUI	CGCG	3 cut(s)	347, 476, 557
BstV1I	GCAGC	2 cut(s)	271, 407
BstX2I	RGATCY	1 cut(s)	841
BstYI	RGATCY	1 cut(s)	841
BsuRI	GGCC	5 cut(s)	315, 375, 573, 671, 717
BtsCI	GGATG	2 cut(s)	510, 743
BtsIMutI	CAGTG	1 cut(s)	456
Cac8I	GCNNGC	2 cut(s)	255, 478
CfoI	GCGC	1 cut(s)	482
Cfr13I	GGNCC	5 cut(s)	230, 263, 715, 761, 769
CpoI	CGGWCCG	1 cut(s)	761
Csp6I	GTAC	1 cut(s)	140
CspI	CGGWCCG	1 cut(s)	761
CviAII	CATG	6 cut(s)	155, 212, 654, 688, 694, 730
CviQI	GTAC	1 cut(s)	140
DdeI	CTNAG	2 cut(s)	82, 234
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	4 cut(s)	540, 708, 843, 864
DpnII	GATC	4 cut(s)	538, 706, 841, 862
EaeI	YGGCCR	1 cut(s)	669
Eam1104I	CTCTTC	1 cut(s)	330
EarI	CTCTTC	1 cut(s)	330
EciI	GGCGGA	1 cut(s)	807
Eco130I	CCWWGG	1 cut(s)	672
Eco147I	AGGCCT	2 cut(s)	315, 573
Eco47I	GGWCC	4 cut(s)	230, 263, 761, 769
Eco57I	CTGAAG	1 cut(s)	288
Eco88I	CYCGRG	1 cut(s)	608
Eco91I	GGTNACC	1 cut(s)	303
EcoO109I	RGGNCCY	1 cut(s)	769
EcoO65I	GGTNACC	1 cut(s)	303
EcoRII	CCWGG	1 cut(s)	717
EcoT14I	CCWWGG	1 cut(s)	672
EcoT22I	ATGCAT	1 cut(s)	820
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	672
FaeI	CATG	6 cut(s)	158, 215, 657, 691, 697, 733
FalI	AAGNNNNNCTT	2 cut(s)	115, 147
FaqI	GGGAC	2 cut(s)	421, 509
FatI	CATG	6 cut(s)	154, 211, 653, 687, 693, 729
FauI	CCCGC	1 cut(s)	469
Fnu4HI	GCNGC	3 cut(s)	127, 285, 396
FokI	GGATG	2 cut(s)	497, 750
Fsp4HI	GCNGC	3 cut(s)	127, 285, 396
FspBI	CTAG	1 cut(s)	407
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	3 cut(s)	127, 285, 396
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	5 cut(s)	315, 375, 573, 671, 717
HapII	CCGG	2 cut(s)	581, 713
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	6 cut(s)	158, 215, 657, 691, 697, 733
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	2 cut(s)	426, 884
HinfI	GANTC	3 cut(s)	77, 216, 278
HpaII	CCGG	2 cut(s)	581, 713
HphI	GGTGA	2 cut(s)	508, 842
Hpy166II	GTNNAC	1 cut(s)	659
Hpy188I	TCNGA	2 cut(s)	543, 765
Hpy188III	TCNNGA	2 cut(s)	608, 735
Hpy8I	GTNNAC	1 cut(s)	659
Hpy99I	CGWCG	2 cut(s)	557, 707
HpyAV	CCTTC	4 cut(s)	14, 305, 326, 760
HpyCH4III	ACNGT	2 cut(s)	121, 380
HpyCH4V	TGCA	7 cut(s)	257, 287, 404, 495, 659, 818, 881
HpyF10VI	GCNNNNNNNGC	3 cut(s)	401, 857, 866
HpyF3I	CTNAG	2 cut(s)	82, 234
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	6 cut(s)	158, 215, 657, 691, 697, 733
HspAI	GCGC	1 cut(s)	480
KasI	GGCGCC	1 cut(s)	479
Kzo9I	GATC	4 cut(s)	538, 706, 841, 862
LmnI	GCTCC	2 cut(s)	610, 725
Lsp1109I	GCAGC	2 cut(s)	271, 407
LweI	GCATC	1 cut(s)	14
MaeI	CTAG	1 cut(s)	407
MaeIII	GTNAC	2 cut(s)	303, 683
MalI	GATC	4 cut(s)	540, 708, 843, 864
MboI	GATC	4 cut(s)	538, 706, 841, 862
MboII	GAAGA	7 cut(s)	57, 143, 281, 317, 601, 836, 845
MflI	RGATCY	1 cut(s)	841
MhlI	GDGCHC	2 cut(s)	607, 661
MlsI	TGGCCA	1 cut(s)	671
MluCI	AATT	8 cut(s)	38, 105, 273, 359, 443, 456, 561, 795
MluNI	TGGCCA	1 cut(s)	671
Mly113I	GGCGCC	1 cut(s)	480
MmeI	TCCRAC	4 cut(s)	208, 220, 678, 703
Mox20I	TGGCCA	1 cut(s)	671
Mph1103I	ATGCAT	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	671
MseI	TTAA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	692
Msp20I	TGGCCA	1 cut(s)	671
MspA1I	CMGCKG	1 cut(s)	284
MspI	CCGG	2 cut(s)	581, 713
MspR9I	CCNGG	2 cut(s)	714, 719
Mva1269I	GAATGC	1 cut(s)	820
MvaI	CCWGG	1 cut(s)	719
MvnI	CGCG	3 cut(s)	347, 476, 557
MwoI	GCNNNNNNNGC	3 cut(s)	401, 857, 866
NarI	GGCGCC	1 cut(s)	480
NciI	CCSGG	1 cut(s)	714
NdeII	GATC	4 cut(s)	538, 706, 841, 862
NlaIII	CATG	6 cut(s)	158, 215, 657, 691, 697, 733
NlaIV	GGNNCC	3 cut(s)	252, 481, 727
NmuCI	GTSAC	1 cut(s)	683
NsiI	ATGCAT	1 cut(s)	820
NspI	RCATGY	1 cut(s)	697
PceI	AGGCCT	2 cut(s)	315, 573
PciI	ACATGT	1 cut(s)	693
PctI	GAATGC	1 cut(s)	820
PdmI	GAANNNNTTC	1 cut(s)	315
PfeI	GAWTC	3 cut(s)	77, 216, 278
PflFI	GACNNNGTC	1 cut(s)	470
PkrI	GCNGC	3 cut(s)	128, 286, 397
PluTI	GGCGCC	1 cut(s)	483
PpuMI	RGGWCCY	1 cut(s)	769
PscI	ACATGT	1 cut(s)	693
PshAI	GACNNNNGTC	1 cut(s)	681
Psp5II	RGGWCCY	1 cut(s)	769
Psp6I	CCWGG	1 cut(s)	717
PspEI	GGTNACC	1 cut(s)	303
PspGI	CCWGG	1 cut(s)	717
PspN4I	GGNNCC	3 cut(s)	252, 481, 727
PspPI	GGNCC	5 cut(s)	230, 263, 715, 761, 769
PspPPI	RGGWCCY	1 cut(s)	769
PsuI	RGATCY	1 cut(s)	841
PsyI	GACNNNGTC	1 cut(s)	470
PvuII	CAGCTG	1 cut(s)	284
RsaI	GTAC	1 cut(s)	141
RsaNI	GTAC	1 cut(s)	140
RseI	CAYNNNNRTG	1 cut(s)	692
Rsr2I	CGGWCCG	1 cut(s)	761
RsrII	CGGWCCG	1 cut(s)	761
SaqAI	TTAA	1 cut(s)	104
SatI	GCNGC	3 cut(s)	127, 285, 396
Sau3AI	GATC	4 cut(s)	538, 706, 841, 862
Sau96I	GGNCC	5 cut(s)	230, 263, 715, 761, 769
ScaI	AGTACT	1 cut(s)	141
ScrFI	CCNGG	2 cut(s)	714, 719
SduI	GDGCHC	2 cut(s)	607, 661
SfaNI	GCATC	1 cut(s)	14
SfoI	GGCGCC	1 cut(s)	481
SinI	GGWCC	4 cut(s)	230, 263, 761, 769
SmiMI	CAYNNNNRTG	1 cut(s)	692
Sse9I	AATT	8 cut(s)	38, 105, 273, 359, 443, 456, 561, 795
SseBI	AGGCCT	2 cut(s)	315, 573
SsiI	CCGC	7 cut(s)	126, 169, 347, 476, 557, 759, 792
SspDI	GGCGCC	1 cut(s)	479
SspI	AATATT	1 cut(s)	491
SspMI	CTAG	1 cut(s)	407
StuI	AGGCCT	2 cut(s)	315, 573
StyD4I	CCNGG	2 cut(s)	712, 717
StyI	CCWWGG	1 cut(s)	672
TaaI	ACNGT	2 cut(s)	121, 380
TaqI	TCGA	1 cut(s)	75
TasI	AATT	8 cut(s)	38, 105, 273, 359, 443, 456, 561, 795
TatI	WGTACW	1 cut(s)	139
TauI	GCSGC	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	77, 216, 278
Tru1I	TTAA	1 cut(s)	104
Tru9I	TTAA	1 cut(s)	104
TscAI	CASTG	1 cut(s)	456
TseFI	GTSAC	1 cut(s)	683
TseI	GCWGC	2 cut(s)	284, 395
Tsp45I	GTSAC	1 cut(s)	683
TspDTI	ATGAA	5 cut(s)	31, 33, 143, 208, 892
TspRI	CASTG	1 cut(s)	456
Tth111I	GACNNNGTC	1 cut(s)	470
VneI	GTGCAC	1 cut(s)	657
VpaK11BI	GGWCC	4 cut(s)	230, 263, 761, 769
XapI	RAATTY	3 cut(s)	38, 359, 443
XceI	RCATGY	1 cut(s)	697
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	407
ZrmI	AGTACT	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.