Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0008747

Physical Location & Seq

Genomic Coordinates Reverse (-)

20850707 .. 20852452

Gene Structure 1746 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G235600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

ATGGCACTTGTGGAAAAATCTGAGTCAGCTGCTCAGCCTTTAGTGGCCACATCTGTTTTTGACAAGGGGAACTTCCCCTTCAAATGCATTACAGAGGAGACACCTTGCTCTTCCTGTTTTGATTCTTCAGCCCCTCCTAAGCCCTTGTTAATCGTCACACCAACCGTAACCGGCACTTACCCAGTAATCGTGCTCCTCCATGGCTTCTACCTCCGCAACTACTTCTACCAAGACATTCTCCAACATATAGCCTCACATGGATACATAGCTGTTGCACCTCAGCTATACGGATACGTGCCTTCAACTGGACCTGAAGAAATAGATTCAGGGGCCAAAGTCATAAACTGGTTAGCAAAAGGCCTCCAATCCCTGCTACCTGAAAATGTTGTACCAGACTTCACCAAATTTGCTCTATCAGGTCACAGCAGAGGCGGCAAAGCAGCATTTGCACTTGCACTTGGGCATGCCAAAACTGCCCTGTCCCTCAAATTTTCAGTGCTAATAGGCATTGACCCTGTGGCTGGCGCCAACCAACATTGCAGAACCAGGCCCCATATCCTCACCTATGAACCTCAATCTTTCAACCTCTCCATTCCGGTCACGGTAATTGGCACTGGCCTTGGACCAGAAAAGAAGAATGCGTGCATGTCACAGCCATGCGCTCCAAATGGCGTGAACCACAAGGAGTTCTTTCATGAGTGCAAGCCTCCATGTGCACATTTTGTTGTCAAAGACTATGGTCACATGGACATGTTGGACGACGACCCGCCCGGCTTGGTTGGGGCACTTTCGGGATGTATGTGCAAGAATGGGACGGGTCCGAAGGAGCTCATGAGGAAGACTGTGGGTGGGATTGTTGTGGCGTTTTTGAAGGCTTATTTGAATGGGGAGGATGAGGACTTGGTTGCTATTGTGGAGGATCCTGCTGTTTCTCCTGCAAAGCTTGAACCTGTGGAGTTCATTAGAGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0009056 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009987 GO:0015994 GO:0015996 GO:0016787 GO:0016788 GO:0019439 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044248 GO:0044270 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046483 GO:0046700 GO:0047746 GO:0050832 GO:0050896 GO:0051186 GO:0051187 GO:0051704 GO:0051707 GO:0052689 GO:0071704 GO:0098542 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

Chlorophyllase Chlorophyllase2

Protein Analysis

324

Amino Acids

34.67

Weight (kDa)

6.12

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G19670
fragaria_vesca	FvH4_2g23050
malus_domestica	MD03G1259000.v1.1 MD03G1259100.v1.1 MD11G1279400.v1.1
prunus_persica	Prupe.8G235600_v2.0.a1
pyrus_communis	pycom03g20670
rosa_chinensis	RchiOBHm_Chr6g0290141
rosa_laevigata	RLG00000012237 RLG00000012242
rosa_multiflora	Rmu_sc0002902.1_g000027 Rmu_sc0010520.1_g000005
rosa_roxburghii	Rroxscaffold_7G00177300
rosa_rugosa	Rorug06G0210200 Rorug06G0210300
rosa_samantha	Rh6AG320400 Rh6AG320700 Rh6BG328000 Rh6BG328100 Rh6CG334000 Rh6DG321100
rosa_wichuraiana	Rw6G027650 Rw6G027700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	524
AciI	CCGC	3 cut(s)	214, 432, 767
AclWI	GGATC	2 cut(s)	914, 927
AcoI	YGGCCR	1 cut(s)	45
AcsI	RAATTY	2 cut(s)	404, 488
AcuI	CTGAAG	2 cut(s)	111, 333
AcyI	GRCGYC	1 cut(s)	525
AfaI	GTAC	1 cut(s)	390
AfiI	CCNNNNNNNGG	2 cut(s)	305, 521
AflIII	ACRYGT	1 cut(s)	750
AgsI	TTSAA	6 cut(s)	82, 303, 583, 871, 883, 947
AjnI	CCWGG	1 cut(s)	545
AluBI	AGCT	5 cut(s)	29, 269, 283, 829, 943
AluI	AGCT	5 cut(s)	29, 269, 283, 829, 943
Alw21I	GWGCWC	3 cut(s)	195, 718, 831
Alw26I	GTCTC	1 cut(s)	92
Alw44I	GTGCAC	1 cut(s)	714
AlwI	GGATC	2 cut(s)	914, 927
AoxI	GGCC	5 cut(s)	45, 330, 358, 548, 616
ApaLI	GTGCAC	1 cut(s)	714
ApeKI	GCWGC	2 cut(s)	29, 440
ApoI	RAATTY	2 cut(s)	404, 488
AspLEI	GCGC	2 cut(s)	527, 662
AspS9I	GGNCC	5 cut(s)	308, 330, 549, 623, 818
AsuC2I	CCSGG	1 cut(s)	771
AsuHPI	GGTGA	2 cut(s)	391, 553
AvaII	GGWCC	3 cut(s)	308, 623, 818
BaeGI	GKGCMC	2 cut(s)	718, 787
BalI	TGGCCA	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	919
BanI	GGYRCC	1 cut(s)	524
BanII	GRGCYC	1 cut(s)	831
BbsI	GAAGAC	1 cut(s)	845
Bbv12I	GWGCWC	3 cut(s)	195, 718, 831
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	2 cut(s)	16, 452
BciT130I	CCWGG	1 cut(s)	547
BciVI	GTATCC	2 cut(s)	254, 284
BcnI	CCSGG	1 cut(s)	771
BcoDI	GTCTC	1 cut(s)	92
BfoI	RGCGCY	1 cut(s)	528
BfuI	GTATCC	2 cut(s)	254, 284
BisI	GCNGC	3 cut(s)	30, 433, 441
BlpI	GCTNAGC	1 cut(s)	33
BlsI	GCNGC	3 cut(s)	31, 434, 442
Bme1390I	CCNGG	2 cut(s)	547, 771
Bme18I	GGWCC	3 cut(s)	308, 623, 818
BmgT120I	GGNCC	5 cut(s)	308, 330, 549, 623, 818
BmiI	GGNNCC	5 cut(s)	331, 526, 551, 819, 921
BmrFI	CCNGG	2 cut(s)	547, 771
BmrI	ACTGGG	1 cut(s)	176
BmuI	ACTGGG	1 cut(s)	176
BoxI	GACNNNNGTC	1 cut(s)	738
BpiI	GAAGAC	1 cut(s)	845
Bpu10I	CCTNAGC	2 cut(s)	138, 279
Bpu1102I	GCTNAGC	1 cut(s)	33
BpuMI	CCSGG	1 cut(s)	771
BsaAI	YACGTR	1 cut(s)	295
BsaHI	GRCGYC	1 cut(s)	525
BsaJI	CCNNGG	2 cut(s)	199, 619
BsaWI	WCCGGW	1 cut(s)	595
Bsc4I	CCNNNNNNNGG	2 cut(s)	305, 521
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	4 cut(s)	182, 310, 350, 619
Bse3DI	GCAATG	1 cut(s)	535
BseBI	CCWGG	1 cut(s)	547
BseDI	CCNNGG	2 cut(s)	199, 619
BseGI	GGATG	2 cut(s)	800, 898
BseLI	CCNNNNNNNGG	2 cut(s)	305, 521
BseMI	GCAATG	1 cut(s)	535
BseMII	CTCAG	3 cut(s)	12, 47, 293
BseNI	ACTGG	4 cut(s)	182, 310, 350, 619
BseRI	GAGGAG	2 cut(s)	110, 185
BseSI	GKGCMC	2 cut(s)	718, 787
BseXI	GCAGC	2 cut(s)	16, 452
BshFI	GGCC	5 cut(s)	47, 332, 360, 550, 618
BshNI	GGYRCC	1 cut(s)	524
BsiHKAI	GWGCWC	3 cut(s)	195, 718, 831
BsiSI	CCGG	3 cut(s)	171, 596, 771
BslFI	GGGAC	2 cut(s)	466, 826
BslI	CCNNNNNNNGG	2 cut(s)	305, 521
BsmAI	GTCTC	1 cut(s)	92
BsmFI	GGGAC	2 cut(s)	466, 826
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	5 cut(s)	47, 332, 360, 550, 618
Bsp1286I	GDGCHC	4 cut(s)	195, 718, 787, 831
Bsp143I	GATC	1 cut(s)	919
Bsp1720I	GCTNAGC	1 cut(s)	33
Bsp19I	CCATGG	1 cut(s)	199
BspACI	CCGC	3 cut(s)	214, 432, 767
BspANI	GGCC	5 cut(s)	47, 332, 360, 550, 618
BspCNI	CTCAG	3 cut(s)	13, 46, 292
BspHI	TCATGA	2 cut(s)	694, 831
BspLI	GGNNCC	5 cut(s)	331, 526, 551, 819, 921
BspPI	GGATC	2 cut(s)	914, 927
BspQI	GCTCTTC	1 cut(s)	115
BspT107I	GGYRCC	1 cut(s)	524
BsrDI	GCAATG	1 cut(s)	535
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	4 cut(s)	182, 310, 350, 619
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	2 cut(s)	199, 619
BssMI	GATC	1 cut(s)	919
BssNI	GRCGYC	1 cut(s)	525
BssT1I	CCWWGG	2 cut(s)	199, 619
Bst2UI	CCWGG	1 cut(s)	547
Bst4CI	ACNGT	3 cut(s)	166, 604, 844
Bst6I	CTCTTC	1 cut(s)	115
BstACI	GRCGYC	1 cut(s)	525
BstAPI	GCANNNNNTGC	1 cut(s)	446
BstBAI	YACGTR	1 cut(s)	295
BstC8I	GCNNGC	4 cut(s)	465, 523, 643, 704
BstDEI	CTNAG	4 cut(s)	21, 33, 138, 279
BstDSI	CCRYGG	1 cut(s)	199
BstF5I	GGATG	2 cut(s)	800, 898
BstH2I	RGCGCY	1 cut(s)	528
BstHHI	GCGC	2 cut(s)	527, 662
BstKTI	GATC	1 cut(s)	922
BstMAI	GTCTC	1 cut(s)	92
BstMBI	GATC	1 cut(s)	919
BstMWI	GCNNNNNNNGC	3 cut(s)	432, 446, 473
BstNI	CCWGG	1 cut(s)	547
BstNSI	RCATGY	3 cut(s)	467, 649, 754
BstPAI	GACNNNNGTC	1 cut(s)	738
BstSCI	CCNGG	2 cut(s)	545, 769
BstSLI	GKGCMC	2 cut(s)	718, 787
BstV1I	GCAGC	2 cut(s)	16, 452
BstV2I	GAAGAC	1 cut(s)	845
BstX2I	RGATCY	1 cut(s)	919
BstYI	RGATCY	1 cut(s)	919
BsuI	GTATCC	2 cut(s)	254, 284
BsuRI	GGCC	5 cut(s)	47, 332, 360, 550, 618
BtgI	CCRYGG	1 cut(s)	199
BtsCI	GGATG	2 cut(s)	800, 898
BtsIMutI	CAGTG	2 cut(s)	501, 612
Cac8I	GCNNGC	4 cut(s)	465, 523, 643, 704
CciI	TCATGA	2 cut(s)	694, 831
CfoI	GCGC	2 cut(s)	527, 662
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	5 cut(s)	308, 330, 549, 623, 818
Csp6I	GTAC	1 cut(s)	389
CviQI	GTAC	1 cut(s)	389
DdeI	CTNAG	4 cut(s)	21, 33, 138, 279
DinI	GGCGCC	1 cut(s)	526
DpnI	GATC	1 cut(s)	921
DpnII	GATC	1 cut(s)	919
EaeI	YGGCCR	1 cut(s)	45
Eam1104I	CTCTTC	1 cut(s)	115
EarI	CTCTTC	1 cut(s)	115
Ecl136II	GAGCTC	1 cut(s)	829
Eco130I	CCWWGG	2 cut(s)	199, 619
Eco147I	AGGCCT	1 cut(s)	360
Eco24I	GRGCYC	1 cut(s)	831
Eco47I	GGWCC	3 cut(s)	308, 623, 818
Eco53kI	GAGCTC	1 cut(s)	829
Eco57I	CTGAAG	2 cut(s)	111, 333
EcoICRI	GAGCTC	1 cut(s)	829
EcoO109I	RGGNCCY	1 cut(s)	549
EcoRII	CCWGG	1 cut(s)	545
EcoT14I	CCWWGG	2 cut(s)	199, 619
EcoT22I	ATGCAT	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	831
EgeI	GGCGCC	1 cut(s)	526
EheI	GGCGCC	1 cut(s)	526
ErhI	CCWWGG	2 cut(s)	199, 619
FalI	AAGNNNNNCTT	4 cut(s)	56, 88, 674, 706
FaqI	GGGAC	2 cut(s)	466, 826
FauI	CCCGC	1 cut(s)	774
Fnu4HI	GCNGC	3 cut(s)	30, 433, 441
FokI	GGATG	2 cut(s)	807, 905
FriOI	GRGCYC	1 cut(s)	831
Fsp4HI	GCNGC	3 cut(s)	30, 433, 441
GlaI	GCGC	2 cut(s)	526, 661
GluI	GCNGC	3 cut(s)	30, 433, 441
HaeII	RGCGCY	1 cut(s)	528
HaeIII	GGCC	5 cut(s)	47, 332, 360, 550, 618
HapII	CCGG	3 cut(s)	171, 596, 771
HhaI	GCGC	2 cut(s)	527, 662
Hin1I	GRCGYC	1 cut(s)	525
Hin6I	GCGC	2 cut(s)	525, 660
HinP1I	GCGC	2 cut(s)	525, 660
HindIII	AAGCTT	1 cut(s)	941
HinfI	GANTC	3 cut(s)	23, 122, 323
HpaII	CCGG	3 cut(s)	171, 596, 771
HphI	GGTGA	2 cut(s)	391, 553
Hpy166II	GTNNAC	2 cut(s)	676, 716
Hpy188I	TCNGA	2 cut(s)	22, 822
Hpy188III	TCNNGA	3 cut(s)	695, 792, 832
Hpy8I	GTNNAC	2 cut(s)	676, 716
Hpy99I	CGWCG	1 cut(s)	764
HpyAV	CCTTC	4 cut(s)	88, 309, 817, 865
HpyCH4III	ACNGT	3 cut(s)	166, 604, 844
HpyCH4IV	ACGT	1 cut(s)	294
HpyF10VI	GCNNNNNNNGC	3 cut(s)	432, 446, 473
HpyF3I	CTNAG	4 cut(s)	21, 33, 138, 279
HpySE526I	ACGT	1 cut(s)	294
Hsp92I	GRCGYC	1 cut(s)	525
HspAI	GCGC	2 cut(s)	525, 660
KasI	GGCGCC	1 cut(s)	524
Kzo9I	GATC	1 cut(s)	919
LguI	GCTCTTC	1 cut(s)	115
LmnI	GCTCC	3 cut(s)	198, 667, 826
Lsp1109I	GCAGC	2 cut(s)	16, 452
MaeII	ACGT	1 cut(s)	294
MaeIII	GTNAC	6 cut(s)	154, 166, 419, 598, 648, 740
MalI	GATC	1 cut(s)	921
MboI	GATC	1 cut(s)	919
MboII	GAAGA	5 cut(s)	102, 117, 326, 646, 850
MflI	RGATCY	1 cut(s)	919
MhlI	GDGCHC	4 cut(s)	195, 718, 787, 831
MlsI	TGGCCA	1 cut(s)	47
MluCI	AATT	3 cut(s)	404, 488, 606
MluNI	TGGCCA	1 cut(s)	47
Mly113I	GGCGCC	1 cut(s)	525
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	265, 735
Mox20I	TGGCCA	1 cut(s)	47
Mph1103I	ATGCAT	1 cut(s)	89
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	1 cut(s)	149
MslI	CAYNNNNRTG	2 cut(s)	655, 749
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	29
MspI	CCGG	3 cut(s)	171, 596, 771
MspR9I	CCNGG	2 cut(s)	547, 771
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	1 cut(s)	547
MwoI	GCNNNNNNNGC	3 cut(s)	432, 446, 473
NarI	GGCGCC	1 cut(s)	525
NciI	CCSGG	1 cut(s)	771
NcoI	CCATGG	1 cut(s)	199
NdeII	GATC	1 cut(s)	919
NlaIV	GGNNCC	5 cut(s)	331, 526, 551, 819, 921
NmuCI	GTSAC	5 cut(s)	154, 419, 598, 648, 740
NsiI	ATGCAT	1 cut(s)	89
NspI	RCATGY	3 cut(s)	467, 649, 754
PaeI	GCATGC	1 cut(s)	467
PagI	TCATGA	2 cut(s)	694, 831
PceI	AGGCCT	1 cut(s)	360
PciI	ACATGT	1 cut(s)	750
PciSI	GCTCTTC	1 cut(s)	115
PctI	GAATGC	1 cut(s)	643
PfeI	GAWTC	2 cut(s)	122, 323
PkrI	GCNGC	3 cut(s)	31, 434, 442
PleI	GAGTC	1 cut(s)	31
PluTI	GGCGCC	1 cut(s)	528
PpsI	GAGTC	1 cut(s)	31
Ppu21I	YACGTR	1 cut(s)	295
PscI	ACATGT	1 cut(s)	750
PshAI	GACNNNNGTC	1 cut(s)	738
Psp124BI	GAGCTC	1 cut(s)	831
Psp6I	CCWGG	1 cut(s)	545
PspGI	CCWGG	1 cut(s)	545
PspN4I	GGNNCC	5 cut(s)	331, 526, 551, 819, 921
PspPI	GGNCC	5 cut(s)	308, 330, 549, 623, 818
PsuI	RGATCY	1 cut(s)	919
PvuII	CAGCTG	1 cut(s)	29
RsaI	GTAC	1 cut(s)	390
RsaNI	GTAC	1 cut(s)	389
RseI	CAYNNNNRTG	2 cut(s)	655, 749
SacI	GAGCTC	1 cut(s)	831
SapI	GCTCTTC	1 cut(s)	115
SaqAI	TTAA	1 cut(s)	149
SatI	GCNGC	3 cut(s)	30, 433, 441
Sau3AI	GATC	1 cut(s)	919
Sau96I	GGNCC	5 cut(s)	308, 330, 549, 623, 818
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	547, 771
SduI	GDGCHC	4 cut(s)	195, 718, 787, 831
SfoI	GGCGCC	1 cut(s)	526
SinI	GGWCC	3 cut(s)	308, 623, 818
SmiMI	CAYNNNNRTG	2 cut(s)	655, 749
SphI	GCATGC	1 cut(s)	467
Sse9I	AATT	3 cut(s)	404, 488, 606
SseBI	AGGCCT	1 cut(s)	360
SsiI	CCGC	3 cut(s)	214, 432, 767
SspDI	GGCGCC	1 cut(s)	524
SstI	GAGCTC	1 cut(s)	831
StuI	AGGCCT	1 cut(s)	360
StyD4I	CCNGG	2 cut(s)	545, 769
StyI	CCWWGG	2 cut(s)	199, 619
TaaI	ACNGT	3 cut(s)	166, 604, 844
TaiI	ACGT	1 cut(s)	297
TasI	AATT	3 cut(s)	404, 488, 606
TauI	GCSGC	1 cut(s)	435
TfiI	GAWTC	2 cut(s)	122, 323
Tru1I	TTAA	1 cut(s)	149
Tru9I	TTAA	1 cut(s)	149
TscAI	CASTG	2 cut(s)	501, 619
TseFI	GTSAC	5 cut(s)	154, 419, 598, 648, 740
TseI	GCWGC	2 cut(s)	29, 440
Tsp45I	GTSAC	5 cut(s)	154, 419, 598, 648, 740
TspDTI	ATGAA	3 cut(s)	582, 683, 949
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	2 cut(s)	501, 619
VneI	GTGCAC	1 cut(s)	714
VpaK11BI	GGWCC	3 cut(s)	308, 623, 818
XapI	RAATTY	2 cut(s)	404, 488
XceI	RCATGY	3 cut(s)	467, 649, 754
Zsp2I	ATGCAT	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.