Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0002658

Physical Location & Seq

Genomic Coordinates Reverse (-)

34856330 .. 34864500

Gene Structure 8171 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1262700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4776 bp

ATGTTGAGATCTGGGAAGGTAAGGGGTGAGAGGGATAAGCAAATTGTTGTTCAGAAGAAAGGGGATGAGTTGAAGCAGGGAGGTTCGGATTCCGGCGGGGAGAAAACCCGGCATTTGGTTTCGGGTGGGGCGGGGGAATCTGAGAAAGAATTGGTGGGGGAAGGTGGAGAAGATGGTGATGTGGGTGGGAATGAAAATGGTGGAGCAACTGAGAGTGGGAAGAAGAGGTGTGTTGGTAACGGTGAAGAAATTGGTGATGATAAAAAGAGAGTGAAGGAAAAAGAGGCAGATGGTGAAGTGCGAATTTTTGGGCGGGTTTTGAAATCACAGTCAGCGGCGAATGGAGGGGGTGATAAGGAGGTGAATGATGGGGAACTGGTTGCGGAAAATAGAGAAAATGACGGGACTCAGAAACAATGTAGTGAGGTTAACAACAAAGGGAGGAAGGAAATGAAGGTAGATGGTAAAGTGCAAGCTATTGGTTGGGTTCTGCAGTCACAGTCTGCGGTGAATGGTGGGTATGATAAGGAAGTGAGTGATGGTGGTCTGGTTGAAGAAGGTAGAGAAAACGACGGGTCTCATAAACAACGTAGTGAGGTAAACAATGAATGGAGGAAGGAAATGGAGGTGGATGGTGCAGTGCAAGTTGTTGGTCGGGTTCTGCAGGCACAGTCAGCGGTGAATGGAGGGTGTGATAAGGATGTGAGTGATGGTGTTCTGGTTGCCGGAATTAGAGAAAGTGATGGGTCTGACAAGCAATGTAGTGAGGTAAAAGATGAAGGGGCTGATCTGTTGGGCCAGAGTGAAAATGTGGGAGTAGGTGAGATTGGGAAGAAGAGGAGGCGGGGTGATAATGGCGAAGAAATTGATGATGATGCTCTTGAGGAAAAAAAGGTGAAGGAAGATGAGGTGGATGGTAAAGTGCTAACTACAGTTAGGGTTCTTCGGTCACGAGTTGTGGTGAATGAGGGGTGTGATAAGGCAGGGAGTGATGGGTCTTGCAAGAAATCTTCCAAAGGGGGTGATCAGTTGGTTGAACGGTTTACAAAGAAGTTGAAAGGCAAGAGAGGGAGCCCACTCAAGGTTGAAAAGGAAAAAAGTGATGGTTCAGGTGCTGGGCCACATAAGATGAAGAATTTCAAACGCAAGCGTGGGAGACCTAAGAAGGTAGAAAAGGAACAGAGTGATCTGTCAGTTGGTCAGTTGAGAAAGGAAGAAAGTGATGGTTCGGGTGCTGGGCAACAGAAGATGAAGAATTTGAAACGCAAGCGTGGGAGACCTAAGAAGGTAGAAAGGGAAGAGAGTGATCTGTCAGTTGGTTGGTTGAGAAAGGAAGAAAGTCATGGTTCGGGTGCTGGGCTACTGAAGATGAAGAATTTGAAACGTAAGCGTGGGAGACCTAAGAAGGTAGAAAAGGAGGAGAGTGATCTGTCAGTTGGTCGGTTGAGAAAGAAGTCAAAATTGAAGCACAAGAGATCACTTAAGGTGCAGAAGACTGATGTGGCTTTGAAAGGAAAGCTTGCTAAGGAAGGCAATATGGTTTTGAGATCGCAAGAAAGAATCAAATCGAGTATGACAACTAATGGTTCATATCTGGAAAGGAGGATTATTGGGAAAGAGTTGGATGTGAAGGCCTTTTCTCCAGCTAAAAGGGATAAAAAAGGAAATGATTTGGAGACTGAGGATAGTGAGGATGGGGAAGGAAGTAATGAACGGAAACAGAAACAGAAGGGAAATAAAGGACAGAAAAATAAGCAGAAGAGTCGGGATGGAGATTGCGCCAGAAGTAGGCAAAAACAGTTGGTGAGAGATAAGATAGTGGATCTAATTATGCGTGCAGGTTGGACCATTCAATATAGGCCTAGGAATGGCAAAGAGTACAAGGATGCAGTGTACGTAACTCCAGCAGGACAGACTCACTGGTCGGTCACCAAGGCTTACACAACTCTTAAAGCGCATTGTGAAAATGGTGAAAATAATTCCAAGTTTTGTAAGCCTGGCTTCAAATTTACTTTGATACCACCAGAGGAAATCGACATGCTAGCAAGGATACAAGTCGTGAAAAGGGTGGGGAAAAAGAAGGGGAAGAAGGGCAAAAATGGAATGGAGGGTGGAAAGAAGAAAAGGGGTGGGAATACAGTGGATGGAGTTACTGAAGAGAAAAAGAAAAAGAAATTGGGTAGGCCACTCAAAGGGAAACGTTTGCTTCTTGAAAAGGATGATTCAGCACGTGCAGCATGCAAGGGAAGGCGAAGTTTATATAAGACAAAAAATAGAAAGCGATGTGCTTTACTGGTTCGGAACTCTGAGAATGCCGATTCAGATGATGATGGCCATGTACTATATGACGGGAAAAGAACAGTTCTTGCCTGGATGATTGATTTGGGAACCCTATCACTTAATTCGAAGGTGAAGTACATGAACAGGAGAAAGACACAGGTGCTTCTTGAGGGTAACATTACAAGAGATGGAATTCATTGTGGTTGCTGTGGAGAAACAATCTCGATTTCGAAGTTTGTAACCCATGCCAAAAGTGATTACTCTGAGCCATTTAAACATATATATCTAGACTCAGGGTCTACCCTTTTGCAATGCCTGCTTGACTCATGGAATAGACAGGATGAATACGACCGTCGGGGATTCCATTTCGTGGGTGTCAACAGGGAAGACCCAAACGATGATACATGTGGAATCTGTGGAGATGGTGGGAACTTGATTTGTTGTGATGGCTGTCCATCAACATTCCATCAAAATTGTTTAGAGATAAAGAAGTTCCCCTCAGGTGATTGGCATTGTGTATATTGTTCATGCAAATTTTGTGGGATGTTTGGCGGTAATATATGCGAAATCGATGGCAATGACAATGAAAATGTAGCTACATCAGCATTAATTACCTGCCATTTGTGTGAGGAAAAATATCACAAATCCTGTATTCAGGCAAAGGATGCTGTAAATGATGATTCCAATGATCCATCCTTCTGCGGGAAGAATTGTCAAGAGCTATTTGCGAGTCTTCAGATGCTTCTTGGAGTGAGGCAAGAAATCGAAGATGGATTTTCATTGACTCTGATTCACCGATCTGATACGAGCTCAATTTCTATTTGTGACACACCACAGATAGATGATTGTGATTCAAAGCTAATTGAATGCAATTCCAAGCTGGCTGTTGCATTTTTACTAATGGATGAGTGTTTTTTGCCTATGGTTGACCACAGAAGTGGAGTCAATTTGATTCATAATATTCTGTATAATCGTGGGTCAAATTTTAGTAGACTGAATTATAGTGGTTTCTTGACTGCAATTCTAGAAAGAGGTGATGAGATCATATCAGCGGCATCCATCCGGATTCATGGGAACTATTTAGCAGAGATGCCATTTGTTGGGACCCGATATATGTACAGGCGTCAAGGAATGTGCCGTCGGCTTCTAATTGGAATTGAATCTGCTCTCAGCTCGTTGAATGTTGAAAGATTGGTTATACCTGCAATCTCAGAACTCAGAGAAACATGGACTTCTGTTTTTGGTTTTAAGCCCCTTGAAGAATCAAGCAAGCAGAGGATGAAGAACATGAACATATTGGTTTTCCCTGGTGTAGATATCTTAGAGAAGCCAGTGTCGAAGCACTTAACAGAAGCAAATATGATTCCCGCTGAAGGTGTGAGGTCCACTGAACTTGAGCATCAGCAACTCGAGCAAGAGGTTTTATGTGATATTAATGAGAAACGTTTGGTTGCGTCTGGAATTGAAGCATCTGCACCGTGTGGAAGTGAGGCAAGTGATGAACTTGCTGATGTTGAATCTGATACACAGCATCACTGTGGTGTTTCTCAGGATAATCTGGAGGAGAAAAGCAATACAATTATTATTCCTCCTCCATCAATGTGTGATATCCATGAACAAACTGAGGAGGTCAACCAGAGCTCTGCTTCAGTTCCTGATGTAGGGACAGTGGAAGTGGACACCCAACAAGACCAGCATATCATGCTCGAAGTCGAAAACAAATCTCTGACATCACATCATAGTAGTTCTGTTAGGAACCACAATTCTCATGATGAAAGATCCATTTGCCGCTCTACTGAAAATAATACCACCGAGCAGCAGCACATCGCACATGAAGTAAAGGTTTCCGATGAAATTACTGTCTGCCATGATTCAGCGACTACAACTGAGGCATCTCATGAGGCAAGCGACCTTAAGCATCAGGATTCTCTAAGTGTGCAGGTTGCAGGATCTATTTTCTGTCCGGATGGAAAGATGTCTGAGACTTGTGAAGCGGAATGTAACCATCCTTCTACTCAGCATACACCTGCAGTGATAGTTGAGGAGCATCCAGAATCTATCAAGTGTTATGGCTCTGAAATTCTGACTGGAACTAGTGAGGTCGCCAGTGATATACTTCACCCAACTCCCCTGTTGCCTCACCAGAAAGCAGATGAGCTTGAAGGTAACAGGCTCAACACTCATAAAGTTGCAGATGGGTTTGAAGGCAACGGGCTCAACACTCATAATGTTGCAGATGAGTTTAAAGGCAATGGGCTCAACACTCAAAAAGTCGACTCTGCTCTTACATGTGGACATGCCAAGTCCCCGGAGGTTACTGATTTGAATTTAACTCCCGAGGAGTCTCAGAACACAACATCCGTAAAGCAATCTGAACTCGATTCTCAGACAAGTCCCACACAGTGCAACTCGAGCAATACGCCTGTTGTGGCTCTTCACTGCGCATCCGGTGGGGGTACTTCGGGGGCGGTTATTCTATCAAATCAGGCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

1592

Amino Acids

175.0

Weight (kDa)

6.86

Isoelectric Point (pI)

45.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7028	PF22970	593 - 652	4.2e-08	Domain of unknown function (DUF7028)
TDBD	PF16135	818 - 866	8.4e-18	Tify domain binding domain
PHD	PF00628	896 - 935	8.2e-06	PHD-finger
IDM1_C	PF23209	1065 - 1204	2.8e-57	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36740 AT5G36740 AT5G36740 AT5G36740 AT5G36740
fragaria_vesca	FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330
malus_domestica	MD03G1262700.v1.1 MD11G1283400.v1.1
prunus_persica	Prupe.8G239000_v2.0.a1
pyrus_communis	pycom03g21020 pycom11g25090
rosa_chinensis	RchiOBHm_Chr6g0290741 RchiOBHm_Chr6g0290751
rosa_laevigata	RLG00000012182
rosa_multiflora	Rmu_co8421285.1_g000001 Rmu_sc0000043.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176760
rosa_rugosa	Rorug06G0214400 Rorug06G0214500 Rorug06G0214600
rosa_samantha	Rh6AG325000 Rh6BG332600 Rh6CG338300 Rh6DG325800
rosa_wichuraiana	Rw6G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	4315
AasI	GACNNNNNNGTC	1 cut(s)	1921
Acc16I	TGCGCA	1 cut(s)	4723
Acc36I	ACCTGC	5 cut(s)	1829, 2903, 3490, 4210, 4315
AccB7I	CCANNNNNTGG	2 cut(s)	2650, 3380
AccBSI	CCGCTC	1 cut(s)	4071
AccI	GTMKAC	3 cut(s)	2579, 3271, 4554
AccIII	TCCGGA	2 cut(s)	3342, 4243
AclI	AACGTT	2 cut(s)	2200, 3724
AclWI	GGATC	4 cut(s)	1830, 2963, 4053, 4237
AcoI	YGGCCR	1 cut(s)	2332
AcuI	CTGAAG	5 cut(s)	1385, 2175, 2999, 3672, 3912
AcvI	CACGTG	1 cut(s)	2231
AcyI	GRCGYC	1 cut(s)	3403
AdeI	CACNNNGTG	2 cut(s)	3761, 4683
AfaI	GTAC	6 cut(s)	1880, 1895, 2340, 2417, 3398, 4738
AflII	CTTAAG	2 cut(s)	1481, 4193
AflIII	ACRYGT	2 cut(s)	2684, 4568
AhdI	GACNNNNNGTC	1 cut(s)	2575
AhlI	ACTAGT	1 cut(s)	4373
AjnI	CCWGG	3 cut(s)	1996, 2369, 3586
AjuI	GAANNNNNNNTTGG	2 cut(s)	2159, 2191
AleI	CACNNNNGTG	2 cut(s)	3216, 3819
AloI	GAACNNNNNNTCC	2 cut(s)	4622, 4654
Alw21I	GWGCWC	2 cut(s)	3092, 3923
Alw26I	GTCTC	7 cut(s)	582, 1150, 1270, 1390, 1670, 4256, 4629
AlwI	GGATC	4 cut(s)	1830, 2963, 4053, 4237
AlwNI	CAGNNNCTG	2 cut(s)	1115, 3935
Ama87I	CYCGRG	3 cut(s)	3689, 4616, 4690
Aor13HI	TCCGGA	2 cut(s)	3342, 4243
AoxI	GGCC	6 cut(s)	796, 1118, 1632, 1859, 2183, 2332
ApeKI	GCWGC	3 cut(s)	2234, 4096, 4099
AseI	ATTAAT	2 cut(s)	2888, 3714
Asp700I	GAANNNNTTC	1 cut(s)	1136
AspA2I	CCTAGG	1 cut(s)	1862
AspLEI	GCGC	3 cut(s)	1781, 1957, 4724
AspS9I	GGNCC	5 cut(s)	796, 1118, 1845, 3384, 3663
AsuC2I	CCSGG	2 cut(s)	109, 4589
AsuII	TTCGAA	2 cut(s)	2405, 2510
AsuNHI	GCTAGC	1 cut(s)	2041
AvaI	CYCGRG	3 cut(s)	3689, 4616, 4690
AvaII	GGWCC	3 cut(s)	1845, 3384, 3663
AvrII	CCTAGG	1 cut(s)	1862
AxyI	CCTNAGG	1 cut(s)	2779
BalI	TGGCCA	1 cut(s)	2334
BanII	GRGCYC	5 cut(s)	1076, 3092, 3923, 4497, 4539
BarI	GAAGNNNNNNTAC	4 cut(s)	2399, 2431, 4273, 4305
BauI	CACGAG	1 cut(s)	951
BbrPI	CACGTG	1 cut(s)	2231
BbsI	GAAGAC	3 cut(s)	1499, 2673, 3005
Bbv12I	GWGCWC	2 cut(s)	3092, 3923
BbvI	GCAGC	3 cut(s)	2246, 4108, 4111
BceAI	ACGGC	1 cut(s)	3402
BcgI	CGANNNNNNTGC	2 cut(s)	1745, 1779
BciT130I	CCWGG	3 cut(s)	1998, 2371, 3588
BciVI	GTATCC	1 cut(s)	2043
BclI	TGATCA	1 cut(s)	1024
BcnI	CCSGG	2 cut(s)	109, 4589
BcoDI	GTCTC	7 cut(s)	582, 1150, 1270, 1390, 1670, 4256, 4629
BcuI	ACTAGT	1 cut(s)	4373
BfaI	CTAG	6 cut(s)	1863, 2042, 2567, 3305, 4374, 4770
BfmI	CTRYAG	4 cut(s)	491, 662, 930, 4308
BfrI	CTTAAG	2 cut(s)	1481, 4193
BfuAI	ACCTGC	5 cut(s)	1829, 2903, 3490, 4210, 4315
BfuI	GTATCC	1 cut(s)	2043
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	6 cut(s)	336, 2235, 3333, 4069, 4097, 4100
BlnI	CCTAGG	1 cut(s)	1862
BlsI	GCNGC	6 cut(s)	337, 2236, 3334, 4070, 4098, 4101
Bme1390I	CCNGG	5 cut(s)	109, 1998, 2371, 3588, 4589
Bme18I	GGWCC	3 cut(s)	1845, 3384, 3663
BmeRI	GACNNNNNGTC	1 cut(s)	2575
BmeT110I	CYCGRG	3 cut(s)	3689, 4616, 4690
BmgT120I	GGNCC	5 cut(s)	796, 1118, 1845, 3384, 3663
BmiI	GGNNCC	5 cut(s)	1073, 2389, 3385, 3386, 4037
BmrFI	CCNGG	5 cut(s)	109, 1998, 2371, 3588, 4589
BmtI	GCTAGC	1 cut(s)	2045
BpiI	GAAGAC	3 cut(s)	1499, 2673, 3005
BpmI	CTGGAG	3 cut(s)	1626, 1887, 3860
Bpu10I	CCTNAGC	1 cut(s)	1524
Bpu14I	TTCGAA	2 cut(s)	2405, 2510
BpuEI	CTTGAG	4 cut(s)	902, 1064, 2468, 3695
BpuMI	CCSGG	2 cut(s)	109, 4589
Bsa29I	ATCGAT	1 cut(s)	2850
BsaAI	YACGTR	2 cut(s)	1897, 2231
BsaHI	GRCGYC	1 cut(s)	3403
BsaI	GGTCTC	4 cut(s)	582, 1150, 1270, 1390
BsaJI	CCNNGG	5 cut(s)	1862, 1932, 3586, 4587, 4617
BsaWI	WCCGGW	3 cut(s)	3342, 4243, 4727
BsaXI	ACNNNNNCTCC	2 cut(s)	832, 862
Bse1I	ACTGG	6 cut(s)	381, 1925, 2298, 3611, 4372, 4386
Bse21I	CCTNAGG	1 cut(s)	2779
Bse3DI	GCAATG	4 cut(s)	764, 2597, 2863, 4537
BseAI	TCCGGA	2 cut(s)	3342, 4243
BseBI	CCWGG	3 cut(s)	1998, 2371, 3588
BseCI	ATCGAT	1 cut(s)	2850
BseDI	CCNNGG	5 cut(s)	1862, 1932, 3586, 4587, 4617
BseMI	GCAATG	4 cut(s)	764, 2597, 2863, 4537
BseNI	ACTGG	6 cut(s)	381, 1925, 2298, 3611, 4372, 4386
BseRI	GAGGAG	7 cut(s)	853, 1433, 3857, 3861, 3920, 4337, 4634
BseXI	GCAGC	3 cut(s)	2246, 4108, 4111
BseYI	CCCAGC	3 cut(s)	1115, 1235, 1355
BsgI	GTGCAG	6 cut(s)	657, 1508, 1857, 2253, 3738, 4238
Bsh1285I	CGRYCG	1 cut(s)	2632
BshFI	GGCC	6 cut(s)	798, 1120, 1634, 1861, 2185, 2334
BshVI	ATCGAT	1 cut(s)	2850
BsiEI	CGRYCG	1 cut(s)	2632
BsiHKAI	GWGCWC	2 cut(s)	3092, 3923
BsiHKCI	CYCGRG	3 cut(s)	3689, 4616, 4690
BsiSI	CCGG	7 cut(s)	93, 109, 726, 3343, 4244, 4589, 4728
BslFI	GGGAC	5 cut(s)	418, 3397, 3958, 4570, 4659
BsmAI	GTCTC	7 cut(s)	582, 1150, 1270, 1390, 1670, 4256, 4629
BsmFI	GGGAC	5 cut(s)	418, 3397, 3958, 4570, 4659
BsmI	GAATGC	2 cut(s)	2317, 3152
BsnI	GGCC	6 cut(s)	798, 1120, 1634, 1861, 2185, 2334
Bso31I	GGTCTC	4 cut(s)	582, 1150, 1270, 1390
BsoBI	CYCGRG	3 cut(s)	3689, 4616, 4690
Bsp119I	TTCGAA	2 cut(s)	2405, 2510
Bsp1286I	GDGCHC	5 cut(s)	1076, 3092, 3923, 4497, 4539
Bsp13I	TCCGGA	2 cut(s)	3342, 4243
Bsp1407I	TGTACA	1 cut(s)	3396
BspANI	GGCC	6 cut(s)	798, 1120, 1634, 1861, 2185, 2334
BspDI	ATCGAT	1 cut(s)	2850
BspEI	TCCGGA	2 cut(s)	3342, 4243
BspHI	TCATGA	2 cut(s)	4048, 4177
BspLI	GGNNCC	5 cut(s)	1073, 2389, 3385, 3386, 4037
BspMAI	CTGCAG	3 cut(s)	495, 666, 4312
BspMI	ACCTGC	5 cut(s)	1829, 2903, 3490, 4210, 4315
BspOI	GCTAGC	1 cut(s)	2045
BspPI	GGATC	4 cut(s)	1830, 2963, 4053, 4237
BspQI	GCTCTTC	1 cut(s)	4719
BspT104I	TTCGAA	2 cut(s)	2405, 2510
BspTI	CTTAAG	2 cut(s)	1481, 4193
BspTNI	GGTCTC	4 cut(s)	582, 1150, 1270, 1390
BsrBI	CCGCTC	1 cut(s)	4071
BsrDI	GCAATG	4 cut(s)	764, 2597, 2863, 4537
BsrGI	TGTACA	1 cut(s)	3396
BsrI	ACTGG	6 cut(s)	381, 1925, 2298, 3611, 4372, 4386
BssECI	CCNNGG	5 cut(s)	1862, 1932, 3586, 4587, 4617
BssNI	GRCGYC	1 cut(s)	3403
BssSI	CACGAG	1 cut(s)	951
BssT1I	CCWWGG	2 cut(s)	1862, 1932
Bst2BI	CACGAG	1 cut(s)	951
Bst2UI	CCWGG	3 cut(s)	1998, 2371, 3588
Bst6I	CTCTTC	6 cut(s)	218, 830, 1293, 1754, 2151, 4719
BstACI	GRCGYC	1 cut(s)	3403
BstAFI	CTTAAG	2 cut(s)	1481, 4193
BstAPI	GCANNNNNTGC	3 cut(s)	2596, 2945, 3982
BstAUI	TGTACA	1 cut(s)	3396
BstBAI	YACGTR	2 cut(s)	1897, 2231
BstBI	TTCGAA	2 cut(s)	2405, 2510
BstEII	GGTNACC	1 cut(s)	1927
BstENI	CCTNNNNNAGG	1 cut(s)	3939
BstHHI	GCGC	3 cut(s)	1781, 1957, 4724
BstMAI	GTCTC	7 cut(s)	582, 1150, 1270, 1390, 1670, 4256, 4629
BstMCI	CGRYCG	1 cut(s)	2632
BstMWI	GCNNNNNNNGC	8 cut(s)	674, 2234, 2596, 2882, 2945, 3691, 3982, 4692
BstNI	CCWGG	3 cut(s)	1998, 2371, 3588
BstNSI	RCATGY	5 cut(s)	2041, 2241, 2688, 4572, 4580
BstPI	GGTNACC	1 cut(s)	1927
BstSCI	CCNGG	5 cut(s)	107, 1996, 2369, 3586, 4587
BstSFI	CTRYAG	4 cut(s)	491, 662, 930, 4308
BstSNI	TACGTA	1 cut(s)	1897
BstV1I	GCAGC	3 cut(s)	2246, 4108, 4111
BstV2I	GAAGAC	3 cut(s)	1499, 2673, 3005
BstX2I	RGATCY	4 cut(s)	8, 1822, 4058, 4229
BstXI	CCANNNNNNTGG	1 cut(s)	3218
BstYI	RGATCY	4 cut(s)	8, 1822, 4058, 4229
Bsu15I	ATCGAT	1 cut(s)	2850
Bsu36I	CCTNAGG	1 cut(s)	2779
BsuI	GTATCC	1 cut(s)	2043
BsuRI	GGCC	6 cut(s)	798, 1120, 1634, 1861, 2185, 2334
BsuTUI	ATCGAT	1 cut(s)	2850
BtgZI	GCGATG	2 cut(s)	2296, 4090
BtsI	GCAGTG	4 cut(s)	645, 1896, 4317, 4717
BveI	ACCTGC	5 cut(s)	1829, 2903, 3490, 4210, 4315
CaiI	CAGNNNCTG	2 cut(s)	1115, 3935
CciI	TCATGA	2 cut(s)	4048, 4177
CfoI	GCGC	3 cut(s)	1781, 1957, 4724
Cfr13I	GGNCC	5 cut(s)	796, 1118, 1845, 3384, 3663
ClaI	ATCGAT	1 cut(s)	2850
CseI	GACGC	2 cut(s)	3392, 3723
Csp6I	GTAC	6 cut(s)	1879, 1894, 2339, 2416, 3397, 4737
CspCI	CAANNNNNGTGG	4 cut(s)	2800, 2835, 3655, 3690
CviQI	GTAC	6 cut(s)	1879, 1894, 2339, 2416, 3397, 4737
DraI	TTTAAA	2 cut(s)	2554, 4525
DraIII	CACNNNGTG	2 cut(s)	3761, 4683
DrdI	GACNNNNNNGTC	1 cut(s)	1921
DriI	GACNNNNNGTC	1 cut(s)	2575
DseDI	GACNNNNNNGTC	1 cut(s)	1921
EaeI	YGGCCR	1 cut(s)	2332
Eam1104I	CTCTTC	6 cut(s)	218, 830, 1293, 1754, 2151, 4719
Eam1105I	GACNNNNNGTC	1 cut(s)	2575
EarI	CTCTTC	6 cut(s)	218, 830, 1293, 1754, 2151, 4719
Ecl136II	GAGCTC	2 cut(s)	3090, 3921
Eco105I	TACGTA	1 cut(s)	1897
Eco130I	CCWWGG	2 cut(s)	1862, 1932
Eco147I	AGGCCT	2 cut(s)	1634, 1861
Eco24I	GRGCYC	5 cut(s)	1076, 3092, 3923, 4497, 4539
Eco31I	GGTCTC	4 cut(s)	582, 1150, 1270, 1390
Eco32I	GATATC	2 cut(s)	3598, 3889
Eco47I	GGWCC	3 cut(s)	1845, 3384, 3663
Eco53kI	GAGCTC	2 cut(s)	3090, 3921
Eco57I	CTGAAG	5 cut(s)	1385, 2175, 2999, 3672, 3912
Eco72I	CACGTG	1 cut(s)	2231
Eco81I	CCTNAGG	1 cut(s)	2779
Eco88I	CYCGRG	3 cut(s)	3689, 4616, 4690
Eco91I	GGTNACC	1 cut(s)	1927
EcoICRI	GAGCTC	2 cut(s)	3090, 3921
EcoNI	CCTNNNNNAGG	1 cut(s)	3939
EcoO109I	RGGNCCY	1 cut(s)	3384
EcoO65I	GGTNACC	1 cut(s)	1927
EcoRI	GAATTC	1 cut(s)	2472
EcoRII	CCWGG	3 cut(s)	1996, 2369, 3586
EcoRV	GATATC	2 cut(s)	3598, 3889
EcoT14I	CCWWGG	2 cut(s)	1862, 1932
EcoT38I	GRGCYC	5 cut(s)	1076, 3092, 3923, 4497, 4539
ErhI	CCWWGG	2 cut(s)	1862, 1932
FalI	AAGNNNNNCTT	4 cut(s)	1503, 1535, 1985, 2017
FaqI	GGGAC	5 cut(s)	418, 3397, 3958, 4570, 4659
FauI	CCCGC	6 cut(s)	89, 124, 306, 837, 2975, 3655
FbaI	TGATCA	1 cut(s)	1024
FblI	GTMKAC	3 cut(s)	2579, 3271, 4554
Fnu4HI	GCNGC	6 cut(s)	336, 2235, 3333, 4069, 4097, 4100
FriOI	GRGCYC	5 cut(s)	1076, 3092, 3923, 4497, 4539
Fsp4HI	GCNGC	6 cut(s)	336, 2235, 3333, 4069, 4097, 4100
FspBI	CTAG	6 cut(s)	1863, 2042, 2567, 3305, 4374, 4770
FspI	TGCGCA	1 cut(s)	4723
GlaI	GCGC	3 cut(s)	1780, 1956, 4723
GluI	GCNGC	6 cut(s)	336, 2235, 3333, 4069, 4097, 4100
GsaI	CCCAGC	3 cut(s)	1119, 1239, 1359
GsuI	CTGGAG	3 cut(s)	1626, 1887, 3860
HaeIII	GGCC	6 cut(s)	798, 1120, 1634, 1861, 2185, 2334
HapII	CCGG	7 cut(s)	93, 109, 726, 3343, 4244, 4589, 4728
HgaI	GACGC	2 cut(s)	3392, 3723
HhaI	GCGC	3 cut(s)	1781, 1957, 4724
Hin1I	GRCGYC	1 cut(s)	3403
Hin6I	GCGC	3 cut(s)	1779, 1955, 4722
HinP1I	GCGC	3 cut(s)	1779, 1955, 4722
HincII	GTYRAC	5 cut(s)	430, 2659, 3208, 3913, 4555
HindII	GTYRAC	5 cut(s)	430, 2659, 3208, 3913, 4555
HindIII	AAGCTT	1 cut(s)	1517
HpaI	GTTAAC	1 cut(s)	430
HpaII	CCGG	7 cut(s)	93, 109, 726, 3343, 4244, 4589, 4728
Hpy99I	CGWCG	3 cut(s)	575, 2637, 3423
HpyCH4IV	ACGT	6 cut(s)	589, 1384, 1896, 2200, 2230, 3724
HpyF10VI	GCNNNNNNNGC	8 cut(s)	674, 2234, 2596, 2882, 2945, 3691, 3982, 4692
HpySE526I	ACGT	6 cut(s)	589, 1384, 1896, 2200, 2230, 3724
Hsp92I	GRCGYC	1 cut(s)	3403
HspAI	GCGC	3 cut(s)	1779, 1955, 4722
KflI	GGGWCCC	1 cut(s)	3384
Kpn2I	TCCGGA	2 cut(s)	3342, 4243
Ksp22I	TGATCA	1 cut(s)	1024
KspAI	GTTAAC	1 cut(s)	430
LguI	GCTCTTC	1 cut(s)	4719
LmnI	GCTCC	3 cut(s)	203, 1071, 4324
Lsp1109I	GCAGC	3 cut(s)	2246, 4108, 4111
MaeI	CTAG	6 cut(s)	1863, 2042, 2567, 3305, 4374, 4770
MaeII	ACGT	6 cut(s)	589, 1384, 1896, 2200, 2230, 3724
MbiI	CCGCTC	1 cut(s)	4071
MflI	RGATCY	4 cut(s)	8, 1822, 4058, 4229
MhlI	GDGCHC	5 cut(s)	1076, 3092, 3923, 4497, 4539
MlsI	TGGCCA	1 cut(s)	2334
MluNI	TGGCCA	1 cut(s)	2334
MmeI	TCCRAC	2 cut(s)	1602, 1823
Mox20I	TGGCCA	1 cut(s)	2334
MroI	TCCGGA	2 cut(s)	3342, 4243
MroXI	GAANNNNTTC	1 cut(s)	1136
MscI	TGGCCA	1 cut(s)	2334
MslI	CAYNNNNRTG	5 cut(s)	2904, 3216, 3816, 3819, 3880
Msp20I	TGGCCA	1 cut(s)	2334
MspA1I	CMGCKG	4 cut(s)	335, 677, 3332, 3650
MspCI	CTTAAG	2 cut(s)	1481, 4193
MspI	CCGG	7 cut(s)	93, 109, 726, 3343, 4244, 4589, 4728
MspR9I	CCNGG	5 cut(s)	109, 1998, 2371, 3588, 4589
Mva1269I	GAATGC	2 cut(s)	2317, 3152
MvaI	CCWGG	3 cut(s)	1998, 2371, 3588
MwoI	GCNNNNNNNGC	8 cut(s)	674, 2234, 2596, 2882, 2945, 3691, 3982, 4692
NciI	CCSGG	2 cut(s)	109, 4589
NheI	GCTAGC	1 cut(s)	2041
NlaIV	GGNNCC	5 cut(s)	1073, 2389, 3385, 3386, 4037
NmuCI	GTSAC	4 cut(s)	495, 948, 1927, 3104
NsbI	TGCGCA	1 cut(s)	4723
NspI	RCATGY	5 cut(s)	2041, 2241, 2688, 4572, 4580
NspV	TTCGAA	2 cut(s)	2405, 2510
OliI	CACNNNNGTG	2 cut(s)	3216, 3819
PaeI	GCATGC	1 cut(s)	2241
PaeR7I	CTCGAG	2 cut(s)	3689, 4690
PagI	TCATGA	2 cut(s)	4048, 4177
PaqCI	CACCTGC	1 cut(s)	4315
PceI	AGGCCT	2 cut(s)	1634, 1861
PciI	ACATGT	2 cut(s)	2684, 4568
PciSI	GCTCTTC	1 cut(s)	4719
PctI	GAATGC	2 cut(s)	2317, 3152
PdmI	GAANNNNTTC	1 cut(s)	1136
PflMI	CCANNNNNTGG	2 cut(s)	2650, 3380
PkrI	GCNGC	6 cut(s)	337, 2236, 3334, 4070, 4098, 4101
PmaCI	CACGTG	1 cut(s)	2231
PmlI	CACGTG	1 cut(s)	2231
Ppu21I	YACGTR	2 cut(s)	1897, 2231
PpuMI	RGGWCCY	1 cut(s)	3384
PscI	ACATGT	2 cut(s)	2684, 4568
PshBI	ATTAAT	2 cut(s)	2888, 3714
Psp124BI	GAGCTC	2 cut(s)	3092, 3923
Psp1406I	AACGTT	2 cut(s)	2200, 3724
Psp5II	RGGWCCY	1 cut(s)	3384
Psp6I	CCWGG	3 cut(s)	1996, 2369, 3586
PspCI	CACGTG	1 cut(s)	2231
PspEI	GGTNACC	1 cut(s)	1927
PspFI	CCCAGC	3 cut(s)	1115, 1235, 1355
PspGI	CCWGG	3 cut(s)	1996, 2369, 3586
PspN4I	GGNNCC	5 cut(s)	1073, 2389, 3385, 3386, 4037
PspPI	GGNCC	5 cut(s)	796, 1118, 1845, 3384, 3663
PspPPI	RGGWCCY	1 cut(s)	3384
PspXI	VCTCGAGB	2 cut(s)	3689, 4690
PstI	CTGCAG	3 cut(s)	495, 666, 4312
PstNI	CAGNNNCTG	2 cut(s)	1115, 3935
PsuI	RGATCY	4 cut(s)	8, 1822, 4058, 4229
RsaI	GTAC	6 cut(s)	1880, 1895, 2340, 2417, 3398, 4738
RsaNI	GTAC	6 cut(s)	1879, 1894, 2339, 2416, 3397, 4737
RseI	CAYNNNNRTG	5 cut(s)	2904, 3216, 3816, 3819, 3880
SacI	GAGCTC	2 cut(s)	3092, 3923
SalI	GTCGAC	1 cut(s)	4553
SapI	GCTCTTC	1 cut(s)	4719
SatI	GCNGC	6 cut(s)	336, 2235, 3333, 4069, 4097, 4100
Sau96I	GGNCC	5 cut(s)	796, 1118, 1845, 3384, 3663
ScrFI	CCNGG	5 cut(s)	109, 1998, 2371, 3588, 4589
SduI	GDGCHC	5 cut(s)	1076, 3092, 3923, 4497, 4539
SfcI	CTRYAG	4 cut(s)	491, 662, 930, 4308
Sfr274I	CTCGAG	2 cut(s)	3689, 4690
SfuI	TTCGAA	2 cut(s)	2405, 2510
SinI	GGWCC	3 cut(s)	1845, 3384, 3663
SlaI	CTCGAG	2 cut(s)	3689, 4690
SmiMI	CAYNNNNRTG	5 cut(s)	2904, 3216, 3816, 3819, 3880
SmlI	CTYRAG	8 cut(s)	881, 1079, 1481, 2447, 3674, 3689, 4193, 4690
SmoI	CTYRAG	8 cut(s)	881, 1079, 1481, 2447, 3674, 3689, 4193, 4690
SnaBI	TACGTA	1 cut(s)	1897
SpeI	ACTAGT	1 cut(s)	4373
SphI	GCATGC	1 cut(s)	2241
SseBI	AGGCCT	2 cut(s)	1634, 1861
SspI	AATATT	1 cut(s)	3241
SspMI	CTAG	6 cut(s)	1863, 2042, 2567, 3305, 4374, 4770
SstI	GAGCTC	2 cut(s)	3092, 3923
StuI	AGGCCT	2 cut(s)	1634, 1861
StyD4I	CCNGG	5 cut(s)	107, 1996, 2369, 3586, 4587
StyI	CCWWGG	2 cut(s)	1862, 1932
TaiI	ACGT	6 cut(s)	592, 1387, 1899, 2203, 2233, 3727
TaqII	GACCGA	2 cut(s)	936, 1915
TatI	WGTACW	4 cut(s)	1878, 2338, 2415, 3396
TauI	GCSGC	3 cut(s)	338, 3335, 4071
TseFI	GTSAC	4 cut(s)	495, 948, 1927, 3104
TseI	GCWGC	3 cut(s)	2234, 4096, 4099
Tsp45I	GTSAC	4 cut(s)	495, 948, 1927, 3104
TspGWI	ACGGA	2 cut(s)	1729, 4630
Van91I	CCANNNNNTGG	2 cut(s)	2650, 3380
Vha464I	CTTAAG	2 cut(s)	1481, 4193
VpaK11BI	GGWCC	3 cut(s)	1845, 3384, 3663
VspI	ATTAAT	2 cut(s)	2888, 3714
XagI	CCTNNNNNAGG	1 cut(s)	3939
XbaI	TCTAGA	2 cut(s)	2566, 3304
XceI	RCATGY	5 cut(s)	2041, 2241, 2688, 4572, 4580
XhoI	CTCGAG	2 cut(s)	3689, 4690
XmaJI	CCTAGG	1 cut(s)	1862
XmiI	GTMKAC	3 cut(s)	2579, 3271, 4554
XmnI	GAANNNNTTC	1 cut(s)	1136
XspI	CTAG	6 cut(s)	1863, 2042, 2567, 3305, 4374, 4770

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.