Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0002658

Physical Location & Seq

Genomic Coordinates Reverse (-)

40157558 .. 40165521

Gene Structure 7964 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1283400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4452 bp

ATGTTGAGATCTGGGAAGGTAAGGGGTGAGAGGGATAAGCAAATTGGTGTTCAAAAGAAAGGGGATGAGTTGAAGCGGGGCGGTTTGGATTCCGGCGGGGAGAAAACCCGGCATTTGGTTTCGGGCGGGGCAGAGGAACCCGAGAAAGAATTTGTGGGGGAGGGTGGCGAGGAGGGTGGGAGTGAAAATGGTGGAGCCGCTAAGAGTGGGAAGAAGAGGTGTGTTGGTAATGGTGAAGAAATTGGTGATGAGGGTGTTGAGAAAAAGTGGGTGAAGGAAAAAGAGGCCGATGGTGAAGTGCGAATTTTTGGGCGGGTTTTCCGATCACAGTCAGCGGCGGATGGAGGGGGCGATAAGGAGGTGAGCAATGGGGAACTGGTTGCGGAAAGTAGAGAAAATGACGGGTCTCAGAAACAATGTAGTGAGGGAAACAATGAAAGGAGGAAGGAAATGGAGGTGGATGGTAAAGTGCAAGTTGTTGGTCGAGTTCTGTGGTCACAGTCAGCGGTGAATGGAGGGTGTGGTAAGGTTGTGAGTGATAGTGTTCTGGATGCCGAAAGTAGAGAAAGTGATGGGTCTGACAAGCAATGTAGTGAGGTAAAAGATGAAGGGGTTGTTCTGTTGGGCCAGAGTGAAAATGTGGGAGTAGGTGAGACTGGGAAGAAAAGGAGGCGGGTTGATAATGGCGAAGAAATTGATAATGATGCTCTTGAGAAGAAAAGGGTCAAGGAAGATGAGGTGGATAGTAAAGTGCTAACTACAGTTAGGGTTCTGCGGTCACGAGTTGTGGTGAATGGGGTGTGTGATAAGGCAGGGAGTGATGGGTCTTGCAAGAAATCTTCCAAGGTTAAAAACGAAGGGGGTGATCAGTTGGTTGAACGGTTTGCAAAGAAGTTGGAAGGAAAGAGAGGGGGCCTACTCAAGGTGGAAAAGAATGAAAGTGATGGTTCAGGTGCCGTGCTACTGAAACGTAAGCGTGGGAGACCTAAGAAGGTACAAACGGAAGAGAGTGATCTGTCGGTGGGTCCGTTGAGAAAGAAGTCAAAATTGGAGCACAAGAGACCATTTAATGTGCAAAAGACTAATGTGGGTTTGAAAGGAAAGCTTGCTAATGAAGGCAATATGGTTTTGAGATCACGAGAAAGAATTAAAGTGAATATGACAACTAACAGTTCATATCTGGTAAGGAGGAATATTGGGAAAGAGTTTGATGTGAAGGCCTTTTCTCCAGCTAAAAGGGATAAAAAAGGAAATGATTTGGAGAATGAGGACAGTGAGGATGGAGAAGGAAATAATGAACGGAAACAGAAACAGAAGGGAAATAAAGAACGGAAAATAAAGCACAAGGGTCAGGATCGAGATTGCGCCAGAAGTAAGCAAAAACAGTTGGTGAGAGATAAAATAGTGGATCTAATTATGCGTGCAGGTTGGACCATTCAATATAGGCCTAGGAATGGCAGAGATTACAAGGATGCAGTGTATGTAACTCCAGCAGGACAGACTCACTGGTCAGTCACCAAGGCTTACACAACCCTAAAAATGCGTTGTGAAAATGGTGAAAATAATTCCGAATTTTGTAAGCCTAGCTTCAAATTTACTCCGATTCCACCGGAGGAAATTGACATGCTAGCAAGGATACAAATTGTGAAAAGGGTGGGGAAAAAGAAAGGGAAGAAGGGAAAAAATGGAATGGAGGGCGGGATTAGTGAAAAGAAAAAGAAGAAAAAGGGCGGGTATGCAGTGGATGGAGTTATTGGAGAGAAAAAGAAAAAGAAATTGGGTAGGCCATTCAAGTGGAAACGTTTACTTATTGAGAAGGATGATTCAGCACGTGCAGCGTGCAAGGGAAGGCGAAGTTTACATAAGACAAAATATAGAAAGCGATGTGGTCTGTTGGTTCGGAACTCTGATAATGCGGATTCAGATAATGATGGCCATGTACCATATGATGGGAAAAGAACAGTACTTGCCTGGATGATTGATTTGGGAACACTATCACTTAATTCAAAGGTGAAGTACATGAACAAGAGAAAGACACAGGTGCTTCTTGAGGGTAACATTACAAGAGATGGAATTCATTGTGGTTGCTGTGGAGAAACAATCTCAATTTCGAAGTTTGTAACCCACGCCAAAAGTGATTACTCTGAGCCGTTTAAACATATATATGTAGACTCAGGGTCTACACTTTTGCAATGCCTGCTTGACTCATGGAATAAACAGGATGAATATGAACGTCGGGGATTTCATTTTGTGGGTGTTAACAGGGAAGACCCAAACGATGATACGTGTGGAATCTGTGGAGATGGTGGGGACTTGATTTGTTGTGATGGCTGTCCATCAACATTCCACCAAAATTGTTTAGAGATAAAGAAGTTCCCCTCAGGTGATTGGCATTGTGTATATTGTTCATGCAAATTTTGTGGGATGTTTGGCGGTAATATATGCGAAAGCAATGGCATTGACACTGACACTGACAATTTAGCAGCGTCAGCATTAGTTACCTGCCATGTGTGTGAGGAAAAATTTCACCAATCCTGTATTCAGGCAAAGGATGCTGTAAATGATGATTTCAATGGTCCATCCTTCTGTGGGAAGAATTGTCAAGAGTTATTTGCGAGTCTTCAGATGCTTCTTGGAGTGAGGCAAGAAATTGAAGAAGGATTTTCATTGACTCTGATTCGCCGATCTGATATCAGCTCAATTTCTATTTGTGACACACCACAGACGGATGGTTGTGATTCAAAGCTAATTGAATGCAACTCCAAGCTGGCTGTTGCATTTTTAATAATGGATGAGTGTTTTTTGCCTATGGTTGACCACAGAAGTGGAGTCAATTTAATTCATAATATTCTGTATAATCGTGGGTCAAATTTTAGCAGACTGAATTATAGTGGTTTCTTAACTGCAATTCTAGAGAGAGGTGATGAGATCATATCAGCAGCATCCATCCGGATCCATGGGAACTATTTAGCAGAGATGCCATTTATTGGGACGCGCTATATGTATAGGCGTCAAGGAATGTGCCGTCGGCTTCTAACTGGAATCGAATCTGCTCTCGGCTCGTTGAATGTTGAAAGATTGGTTATACCAGCAATCTTGGAACTCAGAGAAATATGGACTTCTGTTTTTGGTTTTAAGCCCCTTGAAGGTTCAAGCAAGCAGAGGATGAAGAACATGAATGTATTGGTTTTCCCTGGTGTAGATATATTAGAGAAGCCAGTGTCGAAGCACTTACCAGAAGCAAATATGATTCTCGCTGAAGGTGTGAGGTCCACCAAACTTGAGGATCAGCAACTCGAGCAAGACGTTTTATGTGATACTAATGACAAACGTTTGGCTGCGTCTGGAAGTGAAGCATCAGCACCCCGTGGAAACGAGGCAACTGATGAACTTGCTGATTTTGAATCCAATACACAGCATATCTGTGGTGTTTCTCAGGATAATCTGGAGGAGAAAAGCATTCCTCCTCAATCAACTTGTGACGTTCATGAACAGACTGAGGAGGTCAAAGAATATCAGAGTTCTGCTTCAGTTCCTGATGTAGCCACAGTGGAAGAGGACACCCAACAAGGCCAGCATATCATGCCTGAAGTCGAAAGCAAATCTTTGACATCACTTCATAGTGATTCTGATGCCGCTGACTCTCGTGTAAAGATTCTTTCTGCTTCCAGGGAGGTCACTGAAAAAATTGATTGCGAGGTCAGAATAGAAGATGACGCGTTTGAGAATCACGTTGCTCATGACGAAGGATCTATTTGCTGCTCTACTGAAAATGCCACTAAGTTGCAGAGCATGGTCCATGAAGCAAAAGTTCCTGATGAAACTACTGTCTGCCATGATTCAGAGACTACAACTCAGGCATCTCAAGAGGCAAGCGACCTTAAGCATCAGGATTCTCAAAATTTGCAGGTTTCAGGATCTATTTCCTGCCCAGATGGAAAGATGCCTGAAACTTGTGCACCGGAATATAACCATCCTGGTGCTCAGCATACACCTGCAGTGATTGTTGACGTGCATCCAGAATCTATCAAGTGTTATGGCTCTGAAATTGTGACCGAACCTAGCAAGGTTGCCAGAGATGTACTAAACCCGACTCCCCTGTTGTCTCACCAGAAAGCAGATGAGTTTGAAGGCAATAGGCTCGACACTCATAAAGTTGCACATGGGTTTGAAGGCAACCGGAGCAACACTTATAAAGTTGAATCCGCTCCAGCTGACAGAGATTCTCATCTTACATGTGGACGTGCCGACTCCCTGGAGGTTACTGATTTGAACTTAACCCCGGAGGAGTCTCAGAACACAATATCCGTAAAGCAATCAGAACTCAATTCTCAGGTTGATAATACAAGTCCCACACAGTGCAACTCGAGCAATACCCCTGCTGTGGCTCTTCACTGCGCATCCGTTGGGGGTACTTCAGAGGTGGTTATTCTATCAAACCAGGCTAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

1484

Amino Acids

163.51

Weight (kDa)

6.36

Isoelectric Point (pI)

45.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7028	PF22970	452 - 513	4e-08	Domain of unknown function (DUF7028)
TDBD	PF16135	685 - 733	3.2e-17	Tify domain binding domain
PHD	PF00628	763 - 802	5.8e-06	PHD-finger
IDM1_C	PF23209	934 - 1073	4.2e-56	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36740 AT5G36740 AT5G36740 AT5G36740 AT5G36740
fragaria_vesca	FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330
malus_domestica	MD03G1262700.v1.1 MD11G1283400.v1.1
prunus_persica	Prupe.8G239000_v2.0.a1
pyrus_communis	pycom03g21020 pycom11g25090
rosa_chinensis	RchiOBHm_Chr6g0290741 RchiOBHm_Chr6g0290751
rosa_laevigata	RLG00000012182
rosa_multiflora	Rmu_co8421285.1_g000001 Rmu_sc0000043.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176760
rosa_rugosa	Rorug06G0214400 Rorug06G0214500 Rorug06G0214600
rosa_samantha	Rh6AG325000 Rh6BG332600 Rh6CG338300 Rh6DG325800
rosa_wichuraiana	Rw6G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	4194
AarI	CACCTGC	1 cut(s)	4003
AasI	GACNNNNNNGTC	1 cut(s)	1507
Acc16I	TGCGCA	1 cut(s)	4399
Acc36I	ACCTGC	4 cut(s)	1415, 2510, 3898, 4003
AccB1I	GGYRCC	1 cut(s)	953
AccB7I	CCANNNNNTGG	2 cut(s)	1949, 2987
AccBSI	CCGCTC	1 cut(s)	4208
AccI	GTMKAC	2 cut(s)	2169, 2180
AccII	CGCG	2 cut(s)	2995, 3719
AccIII	TCCGGA	1 cut(s)	2949
AclI	AACGTT	2 cut(s)	1801, 3331
AclWI	GGATC	7 cut(s)	1362, 1416, 2947, 2960, 3294, 3757, 3925
AcoI	YGGCCR	1 cut(s)	1933
AcsI	RAATTY	9 cut(s)	149, 303, 1571, 1592, 2073, 2414, 2522, 2869, 3901
AcuI	CTGAAG	5 cut(s)	2606, 3279, 3513, 3609, 4401
AcvI	CACGTG	1 cut(s)	1832
AcyI	GRCGYC	1 cut(s)	3010
AdeI	CACNNNGTG	2 cut(s)	3368, 4359
AfaI	GTAC	6 cut(s)	996, 1941, 1965, 2018, 4083, 4414
AfiI	CCNNNNNNNGG	8 cut(s)	115, 922, 1454, 1949, 2589, 2987, 3146, 4384
AflII	CTTAAG	1 cut(s)	3881
AflIII	ACRYGT	3 cut(s)	2285, 3717, 4235
AhdI	GACNNNNNGTC	1 cut(s)	2176
AjiI	CACGTC	2 cut(s)	4012, 4244
AjnI	CCWGG	6 cut(s)	1970, 3193, 3668, 3976, 4254, 4440
AjuI	GAANNNNNNNTTGG	6 cut(s)	1031, 1063, 1760, 1792, 2523, 2555
AleI	CACNNNNGTG	1 cut(s)	2823
AloI	GAACNNNNNNTCC	2 cut(s)	4289, 4321
AluBI	AGCT	7 cut(s)	1105, 1232, 1587, 2697, 2746, 2767, 4214
AluI	AGCT	7 cut(s)	1105, 1232, 1587, 2697, 2746, 2767, 4214
Alw21I	GWGCWC	3 cut(s)	1056, 3961, 3985
Alw26I	GTCTC	7 cut(s)	411, 647, 976, 1054, 3839, 4110, 4296
Alw44I	GTGCAC	1 cut(s)	3957
AlwI	GGATC	7 cut(s)	1362, 1416, 2947, 2960, 3294, 3757, 3925
AlwNI	CAGNNNCTG	1 cut(s)	3536
Ama87I	CYCGRG	3 cut(s)	140, 3296, 4366
Aor13HI	TCCGGA	1 cut(s)	2949
AoxI	GGCC	8 cut(s)	285, 625, 913, 1218, 1445, 1784, 1933, 3571
ApaLI	GTGCAC	1 cut(s)	3957
ApeKI	GCWGC	5 cut(s)	1835, 2483, 2939, 3338, 3759
ApoI	RAATTY	9 cut(s)	149, 303, 1571, 1592, 2073, 2414, 2522, 2869, 3901
Asp700I	GAANNNNTTC	1 cut(s)	2523
AspA2I	CCTAGG	1 cut(s)	1448
AspLEI	GCGC	3 cut(s)	1367, 2997, 4400
AspS9I	GGNCC	7 cut(s)	625, 913, 1025, 1431, 2576, 3270, 3796
AsuC2I	CCSGG	2 cut(s)	109, 4283
AsuII	TTCGAA	1 cut(s)	2111
AsuNHI	GCTAGC	1 cut(s)	1627
AvaI	CYCGRG	3 cut(s)	140, 3296, 4366
AvaII	GGWCC	5 cut(s)	1025, 1431, 2576, 3270, 3796
AvrII	CCTAGG	1 cut(s)	1448
AxyI	CCTNAGG	1 cut(s)	2380
BaeGI	GKGCMC	1 cut(s)	3961
BalI	TGGCCA	1 cut(s)	1935
BamHI	GGATCC	1 cut(s)	2952
BanI	GGYRCC	1 cut(s)	953
BauI	CACGAG	3 cut(s)	780, 1137, 3645
BbrPI	CACGTG	1 cut(s)	1832
BbsI	GAAGAC	2 cut(s)	2274, 2612
Bbv12I	GWGCWC	3 cut(s)	1056, 3961, 3985
BbvI	GCAGC	5 cut(s)	1847, 2495, 2951, 3325, 3746
BceAI	ACGGC	3 cut(s)	941, 2134, 3009
BcgI	CGANNNNNNTGC	2 cut(s)	4123, 4157
BciT130I	CCWGG	6 cut(s)	1972, 3195, 3670, 3978, 4256, 4442
BciVI	GTATCC	1 cut(s)	1629
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	2 cut(s)	109, 4283
BcoDI	GTCTC	7 cut(s)	411, 647, 976, 1054, 3839, 4110, 4296
BfaI	CTAG	6 cut(s)	1449, 1584, 1628, 2912, 4062, 4446
BfmI	CTRYAG	2 cut(s)	759, 3996
BfrI	CTTAAG	1 cut(s)	3881
BfuAI	ACCTGC	4 cut(s)	1415, 2510, 3898, 4003
BfuI	GTATCC	1 cut(s)	1629
BglII	AGATCT	1 cut(s)	8
BisI	GCNGC	8 cut(s)	198, 336, 1836, 2484, 2940, 3339, 3636, 3760
BlnI	CCTAGG	1 cut(s)	1448
BlpI	GCTNAGC	1 cut(s)	3984
BlsI	GCNGC	8 cut(s)	199, 337, 1837, 2485, 2941, 3340, 3637, 3761
BmcAI	AGTACT	1 cut(s)	1965
Bme1390I	CCNGG	8 cut(s)	109, 1972, 3195, 3670, 3978, 4256, 4283, 4442
Bme18I	GGWCC	5 cut(s)	1025, 1431, 2576, 3270, 3796
BmeRI	GACNNNNNGTC	1 cut(s)	2176
BmeT110I	CYCGRG	3 cut(s)	140, 3296, 4366
BmgBI	CACGTC	2 cut(s)	4012, 4244
BmgT120I	GGNCC	7 cut(s)	625, 913, 1025, 1431, 2576, 3270, 3796
BmiI	GGNNCC	6 cut(s)	138, 196, 914, 955, 1026, 2954
BmrFI	CCNGG	8 cut(s)	109, 1972, 3195, 3670, 3978, 4256, 4283, 4442
BmrI	ACTGGG	1 cut(s)	666
BmtI	GCTAGC	1 cut(s)	1631
BmuI	ACTGGG	1 cut(s)	666
BpiI	GAAGAC	2 cut(s)	2274, 2612
BpmI	CTGGAG	5 cut(s)	1212, 1473, 3467, 4194, 4277
Bpu1102I	GCTNAGC	1 cut(s)	3984
Bpu14I	TTCGAA	1 cut(s)	2111
BpuEI	CTTGAG	5 cut(s)	731, 905, 2069, 3302, 3849
BpuMI	CCSGG	2 cut(s)	109, 4283
BsaAI	YACGTR	2 cut(s)	1832, 2286
BsaBI	GATNNNNATC	1 cut(s)	4227
BsaHI	GRCGYC	1 cut(s)	3010
BsaI	GGTCTC	3 cut(s)	411, 976, 1054
BsaJI	CCNNGG	9 cut(s)	843, 1448, 1518, 2956, 3193, 3367, 3669, 4254, 4281
BsaWI	WCCGGW	4 cut(s)	1609, 2949, 3961, 4179
Bsc4I	CCNNNNNNNGG	8 cut(s)	115, 922, 1454, 1949, 2589, 2987, 3146, 4384
Bse1I	ACTGG	5 cut(s)	381, 661, 1511, 3043, 3218
Bse21I	CCTNAGG	1 cut(s)	2380
Bse3DI	GCAATG	4 cut(s)	373, 593, 2198, 2458
Bse8I	GATNNNNATC	1 cut(s)	4227
BseAI	TCCGGA	1 cut(s)	2949
BseBI	CCWGG	6 cut(s)	1972, 3195, 3670, 3978, 4256, 4442
BseDI	CCNNGG	9 cut(s)	843, 1448, 1518, 2956, 3193, 3367, 3669, 4254, 4281
BseJI	GATNNNNATC	1 cut(s)	4227
BseLI	CCNNNNNNNGG	8 cut(s)	115, 922, 1454, 1949, 2589, 2987, 3146, 4384
BseMI	GCAATG	4 cut(s)	373, 593, 2198, 2458
BseNI	ACTGG	5 cut(s)	381, 661, 1511, 3043, 3218
BseRI	GAGGAG	5 cut(s)	185, 3456, 3464, 3515, 4301
BseSI	GKGCMC	1 cut(s)	3961
BseXI	GCAGC	5 cut(s)	1847, 2495, 2951, 3325, 3746
BsgI	GTGCAG	2 cut(s)	1443, 1854
Bsh1236I	CGCG	2 cut(s)	2995, 3719
BshFI	GGCC	8 cut(s)	287, 627, 915, 1220, 1447, 1786, 1935, 3573
BshNI	GGYRCC	1 cut(s)	953
BsiHKAI	GWGCWC	3 cut(s)	1056, 3961, 3985
BsiHKCI	CYCGRG	3 cut(s)	140, 3296, 4366
BsiSI	CCGG	7 cut(s)	93, 109, 1610, 2950, 3962, 4180, 4283
BslFI	GGGAC	3 cut(s)	2324, 3004, 4335
BslI	CCNNNNNNNGG	8 cut(s)	115, 922, 1454, 1949, 2589, 2987, 3146, 4384
BsmAI	GTCTC	7 cut(s)	411, 647, 976, 1054, 3839, 4110, 4296
BsmFI	GGGAC	3 cut(s)	2324, 3004, 4335
BsmI	GAATGC	2 cut(s)	2759, 3459
BsnI	GGCC	8 cut(s)	287, 627, 915, 1220, 1447, 1786, 1935, 3573
Bso31I	GGTCTC	3 cut(s)	411, 976, 1054
BsoBI	CYCGRG	3 cut(s)	140, 3296, 4366
Bsp119I	TTCGAA	1 cut(s)	2111
Bsp1286I	GDGCHC	3 cut(s)	1056, 3961, 3985
Bsp13I	TCCGGA	1 cut(s)	2949
Bsp1720I	GCTNAGC	1 cut(s)	3984
Bsp19I	CCATGG	1 cut(s)	2956
BspANI	GGCC	8 cut(s)	287, 627, 915, 1220, 1447, 1786, 1935, 3573
BspEI	TCCGGA	1 cut(s)	2949
BspFNI	CGCG	2 cut(s)	2995, 3719
BspHI	TCATGA	2 cut(s)	3487, 3739
BspLI	GGNNCC	6 cut(s)	138, 196, 914, 955, 1026, 2954
BspMAI	CTGCAG	1 cut(s)	4000
BspMI	ACCTGC	4 cut(s)	1415, 2510, 3898, 4003
BspOI	GCTAGC	1 cut(s)	1631
BspPI	GGATC	7 cut(s)	1362, 1416, 2947, 2960, 3294, 3757, 3925
BspQI	GCTCTTC	1 cut(s)	4395
BspT104I	TTCGAA	1 cut(s)	2111
BspT107I	GGYRCC	1 cut(s)	953
BspTI	CTTAAG	1 cut(s)	3881
BspTNI	GGTCTC	3 cut(s)	411, 976, 1054
BsrBI	CCGCTC	1 cut(s)	4208
BsrDI	GCAATG	4 cut(s)	373, 593, 2198, 2458
BsrI	ACTGG	5 cut(s)	381, 661, 1511, 3043, 3218
BssECI	CCNNGG	9 cut(s)	843, 1448, 1518, 2956, 3193, 3367, 3669, 4254, 4281
BssNI	GRCGYC	1 cut(s)	3010
BssSI	CACGAG	3 cut(s)	780, 1137, 3645
BssT1I	CCWWGG	4 cut(s)	843, 1448, 1518, 2956
Bst2BI	CACGAG	3 cut(s)	780, 1137, 3645
Bst2UI	CCWGG	6 cut(s)	1972, 3195, 3670, 3978, 4256, 4442
Bst6I	CTCTTC	4 cut(s)	209, 999, 3549, 4395
BstACI	GRCGYC	1 cut(s)	3010
BstAFI	CTTAAG	1 cut(s)	3881
BstAPI	GCANNNNNTGC	3 cut(s)	2197, 2552, 3583
BstBAI	YACGTR	2 cut(s)	1832, 2286
BstBI	TTCGAA	1 cut(s)	2111
BstC8I	GCNNGC	9 cut(s)	1107, 1422, 1629, 1840, 2198, 2769, 3158, 3575, 3874
BstDSI	CCRYGG	2 cut(s)	2956, 3367
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstFNI	CGCG	2 cut(s)	2995, 3719
BstHHI	GCGC	3 cut(s)	1367, 2997, 4400
BstMAI	GTCTC	7 cut(s)	411, 647, 976, 1054, 3839, 4110, 4296
BstMWI	GCNNNNNNNGC	8 cut(s)	1835, 2197, 2489, 2552, 3298, 3583, 4182, 4368
BstNI	CCWGG	6 cut(s)	1972, 3195, 3670, 3978, 4256, 4442
BstNSI	RCATGY	2 cut(s)	1627, 4239
BstSCI	CCNGG	8 cut(s)	107, 1970, 3193, 3668, 3976, 4254, 4281, 4440
BstSFI	CTRYAG	2 cut(s)	759, 3996
BstSLI	GKGCMC	1 cut(s)	3961
BstUI	CGCG	2 cut(s)	2995, 3719
BstV1I	GCAGC	5 cut(s)	1847, 2495, 2951, 3325, 3746
BstV2I	GAAGAC	2 cut(s)	2274, 2612
BstX2I	RGATCY	5 cut(s)	8, 1408, 2952, 3749, 3917
BstXI	CCANNNNNNTGG	2 cut(s)	1794, 2825
BstYI	RGATCY	5 cut(s)	8, 1408, 2952, 3749, 3917
Bsu36I	CCTNAGG	1 cut(s)	2380
BsuI	GTATCC	1 cut(s)	1629
BsuRI	GGCC	8 cut(s)	287, 627, 915, 1220, 1447, 1786, 1935, 3573
BtgI	CCRYGG	2 cut(s)	2956, 3367
BtgZI	GCGATG	1 cut(s)	1897
BtrI	CACGTC	2 cut(s)	4012, 4244
BtsI	GCAGTG	4 cut(s)	1482, 1746, 4005, 4393
BveI	ACCTGC	4 cut(s)	1415, 2510, 3898, 4003
Cac8I	GCNNGC	9 cut(s)	1107, 1422, 1629, 1840, 2198, 2769, 3158, 3575, 3874
CaiI	CAGNNNCTG	1 cut(s)	3536
CciI	TCATGA	2 cut(s)	3487, 3739
CfoI	GCGC	3 cut(s)	1367, 2997, 4400
Cfr13I	GGNCC	7 cut(s)	625, 913, 1025, 1431, 2576, 3270, 3796
CseI	GACGC	5 cut(s)	2475, 2999, 3001, 3330, 3725
Csp6I	GTAC	6 cut(s)	995, 1940, 1964, 2017, 4082, 4413
CspCI	CAANNNNNGTGG	6 cut(s)	2336, 2371, 2401, 2436, 3262, 3297
CviQI	GTAC	6 cut(s)	995, 1940, 1964, 2017, 4082, 4413
DraI	TTTAAA	1 cut(s)	2155
DraIII	CACNNNGTG	2 cut(s)	3368, 4359
DrdI	GACNNNNNNGTC	1 cut(s)	1507
DriI	GACNNNNNGTC	1 cut(s)	2176
DseDI	GACNNNNNNGTC	1 cut(s)	1507
EaeI	YGGCCR	1 cut(s)	1933
Eam1104I	CTCTTC	4 cut(s)	209, 999, 3549, 4395
Eam1105I	GACNNNNNGTC	1 cut(s)	2176
EarI	CTCTTC	4 cut(s)	209, 999, 3549, 4395
EciI	GGCGGA	1 cut(s)	353
Eco130I	CCWWGG	4 cut(s)	843, 1448, 1518, 2956
Eco147I	AGGCCT	2 cut(s)	1220, 1447
Eco31I	GGTCTC	3 cut(s)	411, 976, 1054
Eco32I	GATATC	1 cut(s)	2692
Eco47I	GGWCC	5 cut(s)	1025, 1431, 2576, 3270, 3796
Eco57I	CTGAAG	5 cut(s)	2606, 3279, 3513, 3609, 4401
Eco72I	CACGTG	1 cut(s)	1832
Eco81I	CCTNAGG	1 cut(s)	2380
Eco88I	CYCGRG	3 cut(s)	140, 3296, 4366
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoO109I	RGGNCCY	1 cut(s)	913
EcoRI	GAATTC	1 cut(s)	2073
EcoRII	CCWGG	6 cut(s)	1970, 3193, 3668, 3976, 4254, 4440
EcoRV	GATATC	1 cut(s)	2692
EcoT14I	CCWWGG	4 cut(s)	843, 1448, 1518, 2956
ErhI	CCWWGG	4 cut(s)	843, 1448, 1518, 2956
FalI	AAGNNNNNCTT	6 cut(s)	1089, 1121, 1571, 1603, 3589, 3621
FaqI	GGGAC	3 cut(s)	2324, 3004, 4335
FauI	CCCGC	7 cut(s)	69, 89, 119, 306, 666, 1691, 1724
FauNDI	CATATG	1 cut(s)	1945
FbaI	TGATCA	1 cut(s)	865
FblI	GTMKAC	2 cut(s)	2169, 2180
Fnu4HI	GCNGC	8 cut(s)	198, 336, 1836, 2484, 2940, 3339, 3636, 3760
Fsp4HI	GCNGC	8 cut(s)	198, 336, 1836, 2484, 2940, 3339, 3636, 3760
FspBI	CTAG	6 cut(s)	1449, 1584, 1628, 2912, 4062, 4446
FspI	TGCGCA	1 cut(s)	4399
GlaI	GCGC	3 cut(s)	1366, 2996, 4399
GluI	GCNGC	8 cut(s)	198, 336, 1836, 2484, 2940, 3339, 3636, 3760
GsuI	CTGGAG	5 cut(s)	1212, 1473, 3467, 4194, 4277
HaeIII	GGCC	8 cut(s)	287, 627, 915, 1220, 1447, 1786, 1935, 3573
HapII	CCGG	7 cut(s)	93, 109, 1610, 2950, 3962, 4180, 4283
HgaI	GACGC	5 cut(s)	2475, 2999, 3001, 3330, 3725
HhaI	GCGC	3 cut(s)	1367, 2997, 4400
Hin1I	GRCGYC	1 cut(s)	3010
Hin6I	GCGC	3 cut(s)	1365, 2995, 4398
HinP1I	GCGC	3 cut(s)	1365, 2995, 4398
HincII	GTYRAC	3 cut(s)	2260, 2815, 4009
HindII	GTYRAC	3 cut(s)	2260, 2815, 4009
HindIII	AAGCTT	1 cut(s)	1103
HpaI	GTTAAC	1 cut(s)	2260
HpaII	CCGG	7 cut(s)	93, 109, 1610, 2950, 3962, 4180, 4283
Hpy99I	CGWCG	2 cut(s)	2238, 3030
HpyF10VI	GCNNNNNNNGC	8 cut(s)	1835, 2197, 2489, 2552, 3298, 3583, 4182, 4368
Hsp92I	GRCGYC	1 cut(s)	3010
HspAI	GCGC	3 cut(s)	1365, 2995, 4398
Kpn2I	TCCGGA	1 cut(s)	2949
Ksp22I	TGATCA	1 cut(s)	865
KspAI	GTTAAC	1 cut(s)	2260
LguI	GCTCTTC	1 cut(s)	4395
LmnI	GCTCC	4 cut(s)	194, 1051, 4182, 4213
Lsp1109I	GCAGC	5 cut(s)	1847, 2495, 2951, 3325, 3746
MaeI	CTAG	6 cut(s)	1449, 1584, 1628, 2912, 4062, 4446
MbiI	CCGCTC	1 cut(s)	4208
MflI	RGATCY	5 cut(s)	8, 1408, 2952, 3749, 3917
MhlI	GDGCHC	3 cut(s)	1056, 3961, 3985
MlsI	TGGCCA	1 cut(s)	1935
MluI	ACGCGT	1 cut(s)	3717
MluNI	TGGCCA	1 cut(s)	1935
MmeI	TCCRAC	2 cut(s)	876, 1409
Mox20I	TGGCCA	1 cut(s)	1935
MroI	TCCGGA	1 cut(s)	2949
MroXI	GAANNNNTTC	1 cut(s)	2523
MscI	TGGCCA	1 cut(s)	1935
MslI	CAYNNNNRTG	6 cut(s)	1792, 2163, 2511, 2823, 3423, 3978
Msp20I	TGGCCA	1 cut(s)	1935
MspA1I	CMGCKG	4 cut(s)	335, 506, 3638, 4214
MspCI	CTTAAG	1 cut(s)	3881
MspI	CCGG	7 cut(s)	93, 109, 1610, 2950, 3962, 4180, 4283
MspR9I	CCNGG	8 cut(s)	109, 1972, 3195, 3670, 3978, 4256, 4283, 4442
MssI	GTTTAAAC	1 cut(s)	2155
Mva1269I	GAATGC	2 cut(s)	2759, 3459
MvaI	CCWGG	6 cut(s)	1972, 3195, 3670, 3978, 4256, 4442
MvnI	CGCG	2 cut(s)	2995, 3719
MwoI	GCNNNNNNNGC	8 cut(s)	1835, 2197, 2489, 2552, 3298, 3583, 4182, 4368
NciI	CCSGG	2 cut(s)	109, 4283
NcoI	CCATGG	1 cut(s)	2956
NdeI	CATATG	1 cut(s)	1945
NheI	GCTAGC	1 cut(s)	1627
NlaIV	GGNNCC	6 cut(s)	138, 196, 914, 955, 1026, 2954
NmeAIII	GCCGAG	1 cut(s)	3036
NmuCI	GTSAC	7 cut(s)	495, 777, 1513, 2711, 3479, 3676, 4051
NsbI	TGCGCA	1 cut(s)	4399
NspI	RCATGY	2 cut(s)	1627, 4239
NspV	TTCGAA	1 cut(s)	2111
OliI	CACNNNNGTG	1 cut(s)	2823
PaeR7I	CTCGAG	2 cut(s)	3296, 4366
PagI	TCATGA	2 cut(s)	3487, 3739
PaqCI	CACCTGC	1 cut(s)	4003
PceI	AGGCCT	2 cut(s)	1220, 1447
PciI	ACATGT	1 cut(s)	4235
PciSI	GCTCTTC	1 cut(s)	4395
PcsI	WCGNNNNNNNCGW	2 cut(s)	1025, 3303
PctI	GAATGC	2 cut(s)	2759, 3459
PdmI	GAANNNNTTC	1 cut(s)	2523
PflMI	CCANNNNNTGG	2 cut(s)	1949, 2987
PkrI	GCNGC	8 cut(s)	199, 337, 1837, 2485, 2941, 3340, 3637, 3761
PmaCI	CACGTG	1 cut(s)	1832
PmeI	GTTTAAAC	1 cut(s)	2155
PmlI	CACGTG	1 cut(s)	1832
Ppu21I	YACGTR	2 cut(s)	1832, 2286
PscI	ACATGT	1 cut(s)	4235
PsiI	TTATAA	1 cut(s)	4194
Psp1406I	AACGTT	2 cut(s)	1801, 3331
Psp6I	CCWGG	6 cut(s)	1970, 3193, 3668, 3976, 4254, 4440
PspCI	CACGTG	1 cut(s)	1832
PspGI	CCWGG	6 cut(s)	1970, 3193, 3668, 3976, 4254, 4440
PspN4I	GGNNCC	6 cut(s)	138, 196, 914, 955, 1026, 2954
PspPI	GGNCC	7 cut(s)	625, 913, 1025, 1431, 2576, 3270, 3796
PspXI	VCTCGAGB	2 cut(s)	3296, 4366
PstI	CTGCAG	1 cut(s)	4000
PstNI	CAGNNNCTG	1 cut(s)	3536
PsuI	RGATCY	5 cut(s)	8, 1408, 2952, 3749, 3917
PvuII	CAGCTG	1 cut(s)	4214
RsaI	GTAC	6 cut(s)	996, 1941, 1965, 2018, 4083, 4414
RsaNI	GTAC	6 cut(s)	995, 1940, 1964, 2017, 4082, 4413
RseI	CAYNNNNRTG	6 cut(s)	1792, 2163, 2511, 2823, 3423, 3978
SapI	GCTCTTC	1 cut(s)	4395
SatI	GCNGC	8 cut(s)	198, 336, 1836, 2484, 2940, 3339, 3636, 3760
Sau96I	GGNCC	7 cut(s)	625, 913, 1025, 1431, 2576, 3270, 3796
ScaI	AGTACT	1 cut(s)	1965
ScrFI	CCNGG	8 cut(s)	109, 1972, 3195, 3670, 3978, 4256, 4283, 4442
SduI	GDGCHC	3 cut(s)	1056, 3961, 3985
SfcI	CTRYAG	2 cut(s)	759, 3996
Sfr274I	CTCGAG	2 cut(s)	3296, 4366
SfuI	TTCGAA	1 cut(s)	2111
SinI	GGWCC	5 cut(s)	1025, 1431, 2576, 3270, 3796
SlaI	CTCGAG	2 cut(s)	3296, 4366
SmiMI	CAYNNNNRTG	6 cut(s)	1792, 2163, 2511, 2823, 3423, 3978
SmlI	CTYRAG	8 cut(s)	710, 920, 2048, 3281, 3296, 3864, 3881, 4366
SmoI	CTYRAG	8 cut(s)	710, 920, 2048, 3281, 3296, 3864, 3881, 4366
SseBI	AGGCCT	2 cut(s)	1220, 1447
SspI	AATATT	2 cut(s)	1195, 2848
SspMI	CTAG	6 cut(s)	1449, 1584, 1628, 2912, 4062, 4446
StuI	AGGCCT	2 cut(s)	1220, 1447
StyD4I	CCNGG	8 cut(s)	107, 1970, 3193, 3668, 3976, 4254, 4281, 4440
StyI	CCWWGG	4 cut(s)	843, 1448, 1518, 2956
TaqI	TCGA	9 cut(s)	484, 1357, 2111, 3045, 3224, 3297, 3594, 4143, 4367
TaqII	GACCGA	1 cut(s)	4070
TatI	WGTACW	3 cut(s)	1963, 2016, 4081
TauI	GCSGC	3 cut(s)	200, 338, 3638
TseFI	GTSAC	7 cut(s)	495, 777, 1513, 2711, 3479, 3676, 4051
TseI	GCWGC	5 cut(s)	1835, 2483, 2939, 3338, 3759
Tsp45I	GTSAC	7 cut(s)	495, 777, 1513, 2711, 3479, 3676, 4051
TspGWI	ACGGA	7 cut(s)	1016, 1017, 1315, 1345, 2741, 4297, 4393
Van91I	CCANNNNNTGG	2 cut(s)	1949, 2987
Vha464I	CTTAAG	1 cut(s)	3881
VneI	GTGCAC	1 cut(s)	3957
VpaK11BI	GGWCC	5 cut(s)	1025, 1431, 2576, 3270, 3796
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	9 cut(s)	149, 303, 1571, 1592, 2073, 2414, 2522, 2869, 3901
XbaI	TCTAGA	1 cut(s)	2911
XceI	RCATGY	2 cut(s)	1627, 4239
XhoI	CTCGAG	2 cut(s)	3296, 4366
XmaJI	CCTAGG	1 cut(s)	1448
XmiI	GTMKAC	2 cut(s)	2169, 2180
XmnI	GAANNNNTTC	1 cut(s)	2523
XspI	CTAG	6 cut(s)	1449, 1584, 1628, 2912, 4062, 4446
ZrmI	AGTACT	1 cut(s)	1965

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.