Rw6G028220

TPL-binding domain in jasmonate signalling

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
Physical Location & Seq
Reverse (-)
52210314 .. 52220161
9848 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G028220.1

Sequence Viewer

Length: 5064 bp
ATGAAAGAGGGGTTGAGATCTGGCAAGTTTAAGGTTGAGAAAGAAAAGGGTTCTTTGAAGCAAACAGTGGTGGGAAACAAAGGGGATGGGGAAACCCCACATTTGGTTTTGGACGGTGGGCATGGACCGGAATTTGATCATGTGGTTCAGACTGGGAATGGTGGTGGTGTTGTTGAGAGGAAAAAGGTGAATGGTCAAGTGCCAATTGTTGGCAGGGTTCTGCGGTCACGGGTTGTGGCGAATGGTGGTGTTGAGGGAGTAGGAGGGGAGACTGGGAAGAAGAGGAGGTTGGTGGCTAATGGGGATGATAAGAAGGGGAAGGAAGAAAAGGTGGGAGGTCAAGTGGGGATTGCTGGTAGGGTTTTGCGGTCGCGGACTGTGGTGAATGGTGGGGAGATGGAGGATGTGGGAGTTGCGGAGAAAAGGAAGAGGCAGAGGTTGGCTACGAAGGGTGAAAATGTTGTTGATGATGGTCTTGAGAAGAAGAAGGGGAAGGAAGAGGGGGATGGTAAAGTGCTGAATGCTGGCCGGGTTCTGCGGTCGCGGACTGTGGTGAATGGTGAGTGTGATAAGGCGGAGAGTGGTGGTGATAAGGCGGAGAGTGGTGGTGTTAAGGCAGAGAGTGATGGTGGTAAGGCAGAGAGTAATGGTGATATGGCGGAGAGCGGTGGTGATAAGGCGGAGAGTGGTGGTGGTAAGGCAGAGAGTGATGGTGGTAAGGCAGAGAGTAATGGTGATATGGCGGAGAGCGGTGGTGATAAGGCGGAGAGTGGTGGTGTTAAGGCAGAGATTGATGGTGGTAAGGCAGAGAGTAATGGTGATATGGAGGAGAGCGGTGGTGATAAGGCGGAGAGTGATGGTGGTAAGGCAGAGAGTAATGGTGATATGGCGGAGAGTGGTGGTGATAAGACAGAGAGTCATATTAATAAGTCAGAGAGTGATGGTGTTAAGACAGAGAGTAATGGTGATAGGGCAGAGAGTGATAGTGATATGGGTGAGAAAGAAAATGTGGAAGTAGCTGAGTTTGGGAAGAAAAGTAGGTTGGTTGGTAATGGTGGTGGCGTGGAGAAAAAGAAGGTGAAGGAAACAGAGGTGGGTGGTAAAGCGCCAGTTGCTGGTCGGGTTCTGCGGTCATGGACTGTGGTGAATGGTGGATTTATGGCAGAGAGTGATGGTGCTCTGGTTAGGGAAAGTAGACAGAAGGATGTGTCTCACAAGAAGTTCAGTGATGTGAAAAATGAAGGACAGGATCAGTTGGTTACAGGGTTTACAAAGAAGTTGAAAGGTAAGCGTGGGAGACCACCCAAGGTGAGAAAAGAAGAAAGTGGGAGGTCGGGTGATGGACTCAGGAAGTTGAAAGGTAAGCGTGGGAGACCACCCAAGGTGAGAAAAGAAGAAAGTGGGAGGTCGGGTGATGGACTCAGGAAGTTGAAAGGTAAGCGTGGGAGACCGGTGAAAAAAGAAAGAGAAGAGAGTGATCTCTTGGATGGTCGGCTGAGAAAGAAGTTAAGATCTGGGCAGAATAGTAGTGAGAATTTGAAAGGAAATCTTGACGAGGAAGGAAATGTGTACTTCAAAAGAAAATCGGGTTCAAAGTCACAAGAAAGAGTGAAACCAAGTACAGTAACTAATGATTCATACCTGGAAAGGAAGAGGATTAGGAAAGAATTGGATGTAAAGGCCTCTTCTCAAGTTAAAAGGGATAAAAAAGGAAGATATGTGGAGAGTGAGGACAGTGAGGACAATGAGGATGGGGATGAACATAAAGCACAGAAACAAAAACAAAGCGGAGATAATAAACAGAGAAGCAAGTCGAAGGATGGCATACGTGAGCTAAAACAGTCAGTGAGTGAAAAAATAGTGAAAATGATTCTGGCTGCAGGCTGGACGGTTGAGCGTAGGCAGAGGAATGGCAGAGAGTACATGGATGCAGTGTATGTATGTCCAGCAGGAAAGACTCACTGGTCAGTAACCAAGGCTTACAATGCTTTTAAAGTGGGTTGTGAAAATGGCGATCCAATGACTTGTAAGGACAGTTTCAAATTTACGCCGATACCACCAGAGGAACTCAGCATGCTACATAGGATAGTTAATAAAAAGGTGGGGAAATATAAGAAGAAGAAGAAGGGAAAGGGTAAAGGACAGGGAAACAGTAATGGAAAGTGGAAGGCAAAGGATGGGGATGTATCAGATGAAGGTATTGAAGAGAAGAGGAAAAAGAAACTGGGTAAGTCACTGAAATGGAAACATTTGCTTCTTGAGAAGGATGCATCAACAAGTACAGCATGCGAGGGAGAGCTGCGTTTGGTCCAGCGTCAGAAGCGGCAGAAGACTCAGAATAGAAAACGATGTGCTTTGTTAGTTCGCAACTCTGAGAATGCGGATTCTGAAAATGATGGCTACATACCATATGATGGGAAGAGAACAGTACTTGCCTGGATGGTTGACTTGGGAACCCTGTCACTTAATTCAAAGTTGAAGTACATGAACAAGAGGAAGAGAAAAGTGCTGCGTGAGGGTAAAATTGCAAGAGATGGAATTCATTGTGGTTGCTGTGACAAAATGATCTCACTTTCAGAATTTGTAACTCATACTGGAAGTGATTATTCTGAGCCTCTTAGATATATATTGACAGACTCTGGGTCTTCCCTTTTGCAATGCCTGCTAAACTCATGGAATAAACAGGAAGAGTCTGAACGTCGGGGATTCCACTTTGTAGAGGTTACTAAGGAAGACCCAAATGATGATACATGTGGGATCTGTGGAGATGGAGGAGATTTGATCTGTTGTGACGGTTGTCCATCAACATTCCATAAAAGTTGCTTGGAGATAAAGAAGTTCCCATCTGGTGACTGGCACTGTGTATACTGCTCATGCAAATTCTGTGGGATGTTTGATGAGAATATGTGTCAAAGGGACAGTAGTGAGAATGTAGTTGCGTCAGCATTACTTACCTGCCATTTGTGTGAGGAAAAATATCATCGATGCTGTATTCAGGCAAAGGATGCTGTAAATGGTGATTCCAGCAGTCCATCCTTCTGCACAAAGAATTGCCAAGAGCTATTTGTAAAACTGGAGAGGCTTCTTGGAGTTAGACATGAAGTGGAAGAAGGGTTTTCATTGACTCTCCTTCGCCGATTTGATGTGGGTGATACACCACAGAAGGTTGATTGCAACTCAAAGCTAATTGAATGCAATGCCAAACTGGCTGTTGCATTTTTAATAATGGATGAGTGTTTTCTGCCTATGGTTGACCACAGAAGTGGAGTCAATCTGATCCATAACATTCTCTATAATCGTGGGTCAAATTTTAACCGACTGAATTATGGTGGTTTCTTCACTGCAATTCTAGAGAGGGGTGATGAGATCATATCTGCCGCAACCATTAGAATCCATGGAAACTATCTAGCAGAGATGCCGTTTATTGGAACCCGCTATATGTATAGGCGTCAAGGAATGTGCCGCCGGCTTCTAAGTGCGATTGAATCTGCTCTCTGCTCTCTGAAAGTTGAAAGATTGGTCATACCTGCAATCTCAGAACTGACGGAAACGTGGACTTCTGTTTTTGGTTTTAAGTCCCTTGAAGAATCAAGTAAACAGAAGATGAAGAACATGAATATCTTGGTTTTCCCTGGTGTAGATATCTTACAGAAACCATTGTTGAACCAGTTAACAGAAAAAAACGAGAGTCCTGTGAAAGAGATAAATGAATGCCAAAATTCTGCCTCTGTTGCTGATGTGAGGGCATTGGAATTGGTCACCAAACAGAACCAGCCGGAGCTGTTATGCAATACTGCTGAGGGTTTCTTGGCTGGATCAGATGCTAAGGCAACTGCATCCTTTAAACACAAGGCAAATGATGAACTTGTTGCTGTTCAGTCTGATACACAGCTTCCTTCTGGTGTTTCACATGATAAGGTGGAGGGGGAAAACAATTCTATGACAATTCCTACTGGTCCAATTAGTGATGCTCATGAACAAACTGAAGATACACAGCTTCTTTGTGGTGTTTCTCATGATAACCGGGAGGTAAACAATACTCTGACCATTCCTACTGGTTCAATTAGTGACGGTCATGAACAAACTGAAGAGAGAAATGAACGTCAAAATTCAGACTCTGTTCCTGATGTGAAGGAAGTGGAATTGGGTACCAAACAGAACCAATATAGCATGTCTAAAGTGGAAAGGAAATCTGATCTTCATCCTGAAGGTATTGATTCTGCTATAGAAGTTCGTTGTGCTTTAGGGGAGGGTACTGAAAACATTGACCGTAAGGTGAGAATGGAAGCTGACATCGTTAAACCCTTTGTTTCATATGAAGATTTTTTTTGCCCATGTACTGAAAATAATGCTACTGAAATGCAGAATGTCTCTTTAGTTCATGAAGCCAACGTTTCCAGTGAAAATATTGTTCGCACTGGTTCAGAGATTACATCTCAGATATCTCATGATGCAAGGGACCATAGGCATTATGATTCTCAACATCTGCAGGTTGAAGGATCTATTTTCCATTCAGATGAAAAGCTGCTTGAGACTTTTGAAGTGGAGAATAACCATTCTTTTATTCAGCACACTTCTATAGTGACTGAAGGGGTGCATCCAGGATCTATCAAGTGTTCCGACTCTAGAATTCTGACCAAAACTGGCAAGGTAGCCAGTGATGGATTTCACCAGGCTGCTGCGTTGACTCATGAAGAAGCAGATGATTCTAAAGGTCATTCTACAACTTTGCTGTTTGGTAGCAGCATTATTTGTACCTCTGGCAATGGGAAGAACACTCACAAAGTTGTCTCAACTCCAGCTGACAACAATTCTCATCCTTCTTGTGGGGCTAATATCAATAGTAATGGGAATTCCAATGCCCCTGATGTCCCTGGTGTCTACTTTACTTCCAATGGCGCTCATATGAGCACCAAGTCCTTGCAGCAATCTGATTTTGATTCTGATATTGATAATAACAGTATCAGACAGCCCAACTCGAGCAATACATGTGCATCTGGTGGGGGTAACTCATTTGGTCCTTCAGAGGTGACAATTTTATCAAACCAGGGCCAGGCTAGTTGA

Protein Analysis

1687

Amino Acids

184.43

Weight (kDa)

7.71

Isoelectric Point (pI)

43.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7028 PF22970 608 - 665 1.6e-09 Domain of unknown function (DUF7028)
TDBD PF16135 840 - 888 1.9e-15 Tify domain binding domain
IDM1_C PF23209 1080 - 1219 1.8e-59 Increased DNA methylation 1, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1963
Acc36I ACCTGC 3 cut(s) 2963, 3535, 4480
Acc65I GGTACC 1 cut(s) 4148
AccB1I GGYRCC 1 cut(s) 4148
AccB7I CCANNNNNTGG 3 cut(s) 209, 1115, 2414
AccBSI CCGCTC 3 cut(s) 666, 750, 834
AccI GTMKAC 3 cut(s) 1195, 2865, 4881
AccII CGCG 2 cut(s) 373, 544
AclI AACGTT 1 cut(s) 4392
AclWI GGATC 7 cut(s) 1257, 2009, 2765, 3271, 3823, 4507, 4612
AcoI YGGCCR 1 cut(s) 526
AcuI CTGAAG 5 cut(s) 4005, 4107, 4227, 4608, 5007
AcyI GRCGYC 1 cut(s) 3448
AfiI CCNNNNNNNGG 7 cut(s) 103, 209, 1115, 2414, 3425, 4826, 5053
AflIII ACRYGT 2 cut(s) 2750, 4988
AgeI ACCGGT 1 cut(s) 1450
AhdI GACNNNNNGTC 2 cut(s) 915, 2641
AjnI CCWGG 8 cut(s) 1641, 2435, 3631, 4600, 4671, 4873, 5046, 5052
AjuI GAANNNNNNNTTGG 4 cut(s) 272, 304, 1025, 1057
AleI CACNNNNGTG 1 cut(s) 3261
Alw21I GWGCWC 2 cut(s) 1180, 4913
Alw26I GTCTC 8 cut(s) 263, 1215, 1291, 1366, 1441, 4375, 4526, 4795
AlwI GGATC 7 cut(s) 1257, 2009, 2765, 3271, 3823, 4507, 4612
AlwNI CAGNNNCTG 3 cut(s) 1115, 2639, 4118
Ama87I CYCGRG 1 cut(s) 4978
AoxI GGCC 3 cut(s) 526, 1680, 5050
ApeKI GCWGC 8 cut(s) 1877, 2299, 2509, 4525, 4676, 4679, 4743, 4924
AseI ATTAAT 1 cut(s) 924
AsiGI ACCGGT 1 cut(s) 1450
Asp718I GGTACC 1 cut(s) 4148
AspLEI GCGC 2 cut(s) 1108, 4901
AspS9I GGNCC 6 cut(s) 125, 2308, 3956, 4459, 5018, 5050
AsuC2I CCSGG 2 cut(s) 530, 4025
AvaI CYCGRG 1 cut(s) 4978
AvaII GGWCC 5 cut(s) 125, 2308, 3956, 4459, 5018
BanI GGYRCC 1 cut(s) 4148
BbsI GAAGAC 3 cut(s) 2336, 2637, 2739
Bbv12I GWGCWC 2 cut(s) 1180, 4913
BbvCI CCTCAGC 1 cut(s) 3798
BbvI GCAGC 8 cut(s) 1864, 2286, 2496, 4512, 4663, 4666, 4755, 4936
BceAI ACGGC 1 cut(s) 3403
BciT130I CCWGG 8 cut(s) 1643, 2437, 3633, 4602, 4673, 4875, 5048, 5054
BclI TGATCA 1 cut(s) 136
BcnI CCSGG 2 cut(s) 530, 4025
BcoDI GTCTC 8 cut(s) 263, 1215, 1291, 1366, 1441, 4375, 4526, 4795
BfaI CTAG 4 cut(s) 3350, 3407, 4626, 5058
BfmI CTRYAG 4 cut(s) 1878, 4224, 4487, 4578
BfoI RGCGCY 2 cut(s) 1109, 4902
BfuAI ACCTGC 3 cut(s) 2963, 3535, 4480
BglI GCCNNNNNGGC 1 cut(s) 3206
BglII AGATCT 2 cut(s) 17, 1511
BmcAI AGTACT 1 cut(s) 2430
Bme18I GGWCC 5 cut(s) 125, 2308, 3956, 4459, 5018
BmeRI GACNNNNNGTC 2 cut(s) 915, 2641
BmeT110I CYCGRG 1 cut(s) 4978
BmgT120I GGNCC 6 cut(s) 125, 2308, 3956, 4459, 5018, 5050
BmiI GGNNCC 4 cut(s) 2455, 3430, 4150, 4460
BmrI ACTGGG 3 cut(s) 162, 282, 2234
BmuI ACTGGG 3 cut(s) 162, 282, 2234
BoxI GACNNNNGTC 1 cut(s) 2796
BpiI GAAGAC 3 cut(s) 2336, 2637, 2739
BpmI CTGGAG 2 cut(s) 3095, 4782
Bpu10I CCTNAGC 2 cut(s) 3798, 3825
BpuEI CTTGAG 4 cut(s) 497, 1674, 2279, 4550
BpuMI CCSGG 2 cut(s) 530, 4025
Bsa29I ATCGAT 1 cut(s) 2983
BsaAI YACGTR 1 cut(s) 1829
BsaBI GATNNNNATC 1 cut(s) 4200
BsaHI GRCGYC 1 cut(s) 3448
BsaI GGTCTC 3 cut(s) 1291, 1366, 1441
BsaJI CCNNGG 7 cut(s) 1305, 1380, 1974, 3394, 3631, 4873, 5047
BsaWI WCCGGW 2 cut(s) 127, 1450
BsaXI ACNNNNNCTCC 6 cut(s) 327, 357, 1321, 1351, 1396, 1426
Bsc4I CCNNNNNNNGG 7 cut(s) 103, 209, 1115, 2414, 3425, 4826, 5053
Bse118I RCCGGY 2 cut(s) 1450, 3465
Bse3DI GCAATG 3 cut(s) 2663, 3202, 4771
Bse8I GATNNNNATC 1 cut(s) 4200
BseBI CCWGG 8 cut(s) 1643, 2437, 3633, 4602, 4673, 4875, 5048, 5054
BseCI ATCGAT 1 cut(s) 2983
BseDI CCNNGG 7 cut(s) 1305, 1380, 1974, 3394, 3631, 4873, 5047
BseJI GATNNNNATC 1 cut(s) 4200
BseLI CCNNNNNNNGG 7 cut(s) 103, 209, 1115, 2414, 3425, 4826, 5053
BseMI GCAATG 3 cut(s) 2663, 3202, 4771
BseRI GAGGAG 3 cut(s) 298, 842, 2787
BseXI GCAGC 8 cut(s) 1864, 2286, 2496, 4512, 4663, 4666, 4755, 4936
BsgI GTGCAG 1 cut(s) 3025
Bsh1236I CGCG 2 cut(s) 373, 544
Bsh1285I CGRYCG 2 cut(s) 371, 542
BshFI GGCC 3 cut(s) 528, 1682, 5052
BshNI GGYRCC 1 cut(s) 4148
BshTI ACCGGT 1 cut(s) 1450
BshVI ATCGAT 1 cut(s) 2983
BsiEI CGRYCG 2 cut(s) 371, 542
BsiHKAI GWGCWC 2 cut(s) 1180, 4913
BsiHKCI CYCGRG 1 cut(s) 4978
BsiSI CCGG 6 cut(s) 128, 529, 1451, 3466, 3776, 4024
BslFI GGGAC 4 cut(s) 2930, 3562, 4472, 4856
BslI CCNNNNNNNGG 7 cut(s) 103, 209, 1115, 2414, 3425, 4826, 5053
BsmAI GTCTC 8 cut(s) 263, 1215, 1291, 1366, 1441, 4375, 4526, 4795
BsmFI GGGAC 4 cut(s) 2930, 3562, 4472, 4856
BsmI GAATGC 4 cut(s) 526, 2383, 3197, 3716
BsnI GGCC 3 cut(s) 528, 1682, 5052
Bso31I GGTCTC 3 cut(s) 1291, 1366, 1441
BsoBI CYCGRG 1 cut(s) 4978
Bsp1286I GDGCHC 2 cut(s) 1180, 4913
Bsp19I CCATGG 1 cut(s) 3394
BspANI GGCC 3 cut(s) 528, 1682, 5052
BspDI ATCGAT 1 cut(s) 2983
BspFNI CGCG 2 cut(s) 373, 544
BspHI TCATGA 6 cut(s) 3973, 4015, 4075, 4381, 4447, 4690
BspLI GGNNCC 4 cut(s) 2455, 3430, 4150, 4460
BspMAI CTGCAG 2 cut(s) 1882, 4491
BspMI ACCTGC 3 cut(s) 2963, 3535, 4480
BspPI GGATC 7 cut(s) 1257, 2009, 2765, 3271, 3823, 4507, 4612
BspT107I GGYRCC 1 cut(s) 4148
BspTNI GGTCTC 3 cut(s) 1291, 1366, 1441
BsrBI CCGCTC 3 cut(s) 666, 750, 834
BsrDI GCAATG 3 cut(s) 2663, 3202, 4771
BsrFI RCCGGY 2 cut(s) 1450, 3465
BssAI RCCGGY 2 cut(s) 1450, 3465
BssECI CCNNGG 7 cut(s) 1305, 1380, 1974, 3394, 3631, 4873, 5047
BssNAI GTATAC 1 cut(s) 2866
BssNI GRCGYC 1 cut(s) 3448
BssT1I CCWWGG 4 cut(s) 1305, 1380, 1974, 3394
Bst1107I GTATAC 1 cut(s) 2866
Bst2UI CCWGG 8 cut(s) 1643, 2437, 3633, 4602, 4673, 4875, 5048, 5054
BstACI GRCGYC 1 cut(s) 3448
BstAPI GCANNNNNTGC 2 cut(s) 2662, 3005
BstBAI YACGTR 1 cut(s) 1829
BstC8I GCNNGC 6 cut(s) 526, 1882, 2075, 2287, 2663, 3467
BstDSI CCRYGG 1 cut(s) 3394
BstEII GGTNACC 1 cut(s) 3757
BstFNI CGCG 2 cut(s) 373, 544
BstH2I RGCGCY 2 cut(s) 1109, 4902
BstHHI GCGC 2 cut(s) 1108, 4901
BstMAI GTCTC 8 cut(s) 263, 1215, 1291, 1366, 1441, 4375, 4526, 4795
BstMCI CGRYCG 2 cut(s) 371, 542
BstMWI GCNNNNNNNGC 7 cut(s) 1112, 1985, 2320, 2662, 3005, 3206, 3731
BstNI CCWGG 8 cut(s) 1643, 2437, 3633, 4602, 4673, 4875, 5048, 5054
BstNSI RCATGY 5 cut(s) 2077, 2289, 2754, 4174, 4992
BstPAI GACNNNNGTC 1 cut(s) 2796
BstPI GGTNACC 1 cut(s) 3757
BstSFI CTRYAG 4 cut(s) 1878, 4224, 4487, 4578
BstUI CGCG 2 cut(s) 373, 544
BstV1I GCAGC 8 cut(s) 1864, 2286, 2496, 4512, 4663, 4666, 4755, 4936
BstV2I GAAGAC 3 cut(s) 2336, 2637, 2739
BstX2I RGATCY 5 cut(s) 17, 1511, 2757, 4499, 4604
BstXI CCANNNNNNTGG 1 cut(s) 3263
BstYI RGATCY 5 cut(s) 17, 1511, 2757, 4499, 4604
BstZ17I GTATAC 1 cut(s) 2866
Bsu15I ATCGAT 1 cut(s) 2983
BsuRI GGCC 3 cut(s) 528, 1682, 5052
BsuTUI ATCGAT 1 cut(s) 2983
BtgI CCRYGG 1 cut(s) 3394
BtsI GCAGTG 2 cut(s) 1938, 3339
BveI ACCTGC 3 cut(s) 2963, 3535, 4480
Cac8I GCNNGC 6 cut(s) 526, 1882, 2075, 2287, 2663, 3467
CaiI CAGNNNCTG 3 cut(s) 1115, 2639, 4118
CciI TCATGA 6 cut(s) 3973, 4015, 4075, 4381, 4447, 4690
CfoI GCGC 2 cut(s) 1108, 4901
Cfr10I RCCGGY 2 cut(s) 1450, 3465
Cfr13I GGNCC 6 cut(s) 125, 2308, 3956, 4459, 5018, 5050
ClaI ATCGAT 1 cut(s) 2983
CseI GACGC 3 cut(s) 2303, 2928, 3437
CspAI ACCGGT 1 cut(s) 1450
CspCI CAANNNNNGTGG 2 cut(s) 2866, 2901
DraI TTTAAA 2 cut(s) 1993, 3844
DrdI GACNNNNNNGTC 1 cut(s) 1963
DriI GACNNNNNGTC 2 cut(s) 915, 2641
DseDI GACNNNNNNGTC 1 cut(s) 1963
EaeI YGGCCR 1 cut(s) 526
Eam1105I GACNNNNNGTC 2 cut(s) 915, 2641
EciI GGCGGA 8 cut(s) 590, 611, 674, 695, 758, 779, 863, 905
Eco130I CCWWGG 4 cut(s) 1305, 1380, 1974, 3394
Eco147I AGGCCT 1 cut(s) 1682
Eco31I GGTCTC 3 cut(s) 1291, 1366, 1441
Eco32I GATATC 2 cut(s) 3643, 4443
Eco47I GGWCC 5 cut(s) 125, 2308, 3956, 4459, 5018
Eco57I CTGAAG 5 cut(s) 4005, 4107, 4227, 4608, 5007
Eco88I CYCGRG 1 cut(s) 4978
Eco91I GGTNACC 1 cut(s) 3757
EcoO65I GGTNACC 1 cut(s) 3757
EcoRI GAATTC 3 cut(s) 2538, 4629, 4852
EcoRII CCWGG 8 cut(s) 1641, 2435, 3631, 4600, 4671, 4873, 5046, 5052
EcoRV GATATC 2 cut(s) 3643, 4443
EcoT14I CCWWGG 4 cut(s) 1305, 1380, 1974, 3394
EcoT22I ATGCAT 1 cut(s) 2272
ErhI CCWWGG 4 cut(s) 1305, 1380, 1974, 3394
FalI AAGNNNNNCTT 2 cut(s) 1533, 1565
FaqI GGGAC 4 cut(s) 2930, 3562, 4472, 4856
FauI CCCGC 1 cut(s) 3440
FauNDI CATATG 3 cut(s) 2410, 4315, 4905
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 3 cut(s) 1195, 2865, 4881
FspBI CTAG 4 cut(s) 3350, 3407, 4626, 5058
GlaI GCGC 2 cut(s) 1107, 4900
GsuI CTGGAG 2 cut(s) 3095, 4782
HaeII RGCGCY 2 cut(s) 1109, 4902
HaeIII GGCC 3 cut(s) 528, 1682, 5052
HapII CCGG 6 cut(s) 128, 529, 1451, 3466, 3776, 4024
HgaI GACGC 3 cut(s) 2303, 2928, 3437
HhaI GCGC 2 cut(s) 1108, 4901
Hin1I GRCGYC 1 cut(s) 3448
Hin6I GCGC 2 cut(s) 1106, 4899
HinP1I GCGC 2 cut(s) 1106, 4899
HincII GTYRAC 4 cut(s) 2446, 3253, 3672, 4686
HindII GTYRAC 4 cut(s) 2446, 3253, 3672, 4686
HpaI GTTAAC 1 cut(s) 3672
HpaII CCGG 6 cut(s) 128, 529, 1451, 3466, 3776, 4024
Hpy99I CGWCG 1 cut(s) 2703
HpyCH4IV ACGT 5 cut(s) 1828, 2698, 3551, 4102, 4392
HpyF10VI GCNNNNNNNGC 7 cut(s) 1112, 1985, 2320, 2662, 3005, 3206, 3731
HpySE526I ACGT 5 cut(s) 1828, 2698, 3551, 4102, 4392
Hsp92I GRCGYC 1 cut(s) 3448
HspAI GCGC 2 cut(s) 1106, 4899
KpnI GGTACC 1 cut(s) 4152
KroI GCCGGC 1 cut(s) 3465
KroNI GCCGGC 1 cut(s) 3467
Ksp22I TGATCA 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 3672
LmnI GCTCC 1 cut(s) 3778
Lsp1109I GCAGC 8 cut(s) 1864, 2286, 2496, 4512, 4663, 4666, 4755, 4936
MaeI CTAG 4 cut(s) 3350, 3407, 4626, 5058
MaeII ACGT 5 cut(s) 1828, 2698, 3551, 4102, 4392
MbiI CCGCTC 3 cut(s) 666, 750, 834
MfeI CAATTG 1 cut(s) 204
MflI RGATCY 5 cut(s) 17, 1511, 2757, 4499, 4604
MhlI GDGCHC 2 cut(s) 1180, 4913
MmeI TCCRAC 1 cut(s) 4644
Mph1103I ATGCAT 1 cut(s) 2272
MroNI GCCGGC 1 cut(s) 3465
MslI CAYNNNNRTG 4 cut(s) 2239, 2964, 3261, 4515
MspA1I CMGCKG 1 cut(s) 4802
MspI CCGG 6 cut(s) 128, 529, 1451, 3466, 3776, 4024
MunI CAATTG 1 cut(s) 204
Mva1269I GAATGC 4 cut(s) 526, 2383, 3197, 3716
MvaI CCWGG 8 cut(s) 1643, 2437, 3633, 4602, 4673, 4875, 5048, 5054
MvnI CGCG 2 cut(s) 373, 544
MwoI GCNNNNNNNGC 7 cut(s) 1112, 1985, 2320, 2662, 3005, 3206, 3731
NaeI GCCGGC 1 cut(s) 3467
NciI CCSGG 2 cut(s) 530, 4025
NcoI CCATGG 1 cut(s) 3394
NdeI CATATG 3 cut(s) 2410, 4315, 4905
NgoMIV GCCGGC 1 cut(s) 3465
NlaIV GGNNCC 4 cut(s) 2455, 3430, 4150, 4460
NsiI ATGCAT 1 cut(s) 2272
NspI RCATGY 5 cut(s) 2077, 2289, 2754, 4174, 4992
OliI CACNNNNGTG 1 cut(s) 3261
PaeI GCATGC 2 cut(s) 2077, 2289
PaeR7I CTCGAG 1 cut(s) 4978
PagI TCATGA 6 cut(s) 3973, 4015, 4075, 4381, 4447, 4690
PceI AGGCCT 1 cut(s) 1682
PciI ACATGT 2 cut(s) 2750, 4988
PctI GAATGC 4 cut(s) 526, 2383, 3197, 3716
PdiI GCCGGC 1 cut(s) 3467
PflMI CCANNNNNTGG 3 cut(s) 209, 1115, 2414
PfoI TCCNGGA 1 cut(s) 4600
PinAI ACCGGT 1 cut(s) 1450
Ppu21I YACGTR 1 cut(s) 1829
PscI ACATGT 2 cut(s) 2750, 4988
PshAI GACNNNNGTC 1 cut(s) 2796
PshBI ATTAAT 1 cut(s) 924
Psp1406I AACGTT 1 cut(s) 4392
Psp6I CCWGG 8 cut(s) 1641, 2435, 3631, 4600, 4671, 4873, 5046, 5052
PspEI GGTNACC 1 cut(s) 3757
PspGI CCWGG 8 cut(s) 1641, 2435, 3631, 4600, 4671, 4873, 5046, 5052
PspN4I GGNNCC 4 cut(s) 2455, 3430, 4150, 4460
PspPI GGNCC 6 cut(s) 125, 2308, 3956, 4459, 5018, 5050
PspXI VCTCGAGB 1 cut(s) 4978
PstI CTGCAG 2 cut(s) 1882, 4491
PstNI CAGNNNCTG 3 cut(s) 1115, 2639, 4118
PsuI RGATCY 5 cut(s) 17, 1511, 2757, 4499, 4604
PvuII CAGCTG 1 cut(s) 4802
RseI CAYNNNNRTG 4 cut(s) 2239, 2964, 3261, 4515
Sau96I GGNCC 6 cut(s) 125, 2308, 3956, 4459, 5018, 5050
ScaI AGTACT 1 cut(s) 2430
SduI GDGCHC 2 cut(s) 1180, 4913
SfcI CTRYAG 4 cut(s) 1878, 4224, 4487, 4578
Sfr274I CTCGAG 1 cut(s) 4978
SinI GGWCC 5 cut(s) 125, 2308, 3956, 4459, 5018
SlaI CTCGAG 1 cut(s) 4978
SmiMI CAYNNNNRTG 4 cut(s) 2239, 2964, 3261, 4515
SmlI CTYRAG 5 cut(s) 476, 1689, 2258, 4529, 4978
SmoI CTYRAG 5 cut(s) 476, 1689, 2258, 4529, 4978
SphI GCATGC 2 cut(s) 2077, 2289
SseBI AGGCCT 1 cut(s) 1682
SspI AATATT 1 cut(s) 4408
SspMI CTAG 4 cut(s) 3350, 3407, 4626, 5058
StuI AGGCCT 1 cut(s) 1682
StyI CCWWGG 4 cut(s) 1305, 1380, 1974, 3394
TaiI ACGT 5 cut(s) 1831, 2701, 3554, 4105, 4395
TaqI TCGA 3 cut(s) 1814, 2983, 4979
TatI WGTACW 7 cut(s) 1569, 1619, 1920, 2279, 2428, 2481, 4337
TauI GCSGC 3 cut(s) 2326, 3380, 3465
TseI GCWGC 8 cut(s) 1877, 2299, 2509, 4525, 4676, 4679, 4743, 4924
TspGWI ACGGA 1 cut(s) 3560
Van91I CCANNNNNTGG 3 cut(s) 209, 1115, 2414
VpaK11BI GGWCC 5 cut(s) 125, 2308, 3956, 4459, 5018
VspI ATTAAT 1 cut(s) 924
XbaI TCTAGA 2 cut(s) 3349, 4625
XceI RCATGY 5 cut(s) 2077, 2289, 2754, 4174, 4992
XcmI CCANNNNNNNNNTGG 1 cut(s) 2850
XhoI CTCGAG 1 cut(s) 4978
XmiI GTMKAC 3 cut(s) 1195, 2865, 4881
XspI CTAG 4 cut(s) 3350, 3407, 4626, 5058
ZrmI AGTACT 1 cut(s) 2430
Zsp2I ATGCAT 1 cut(s) 2272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.