Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002658

Physical Location & Seq

Genomic Coordinates Reverse (-)

53730988 .. 53738355

Gene Structure 7368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ26085

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2787 bp

ATGGTTGACTTGGGAACCCTGTCACTTAATTCAAAGTTGAAGTACATGAACAAGAGGAAGAGAAAAGTGCTGCTTGAGGGTAAAATTGCAAGAGATGGAATTCATTGTGGTTGCTGTGACAAAACCATCTCACTTTCAGAATTTGTAACTCATACCGGAAGTGATTATTCTGAGCCTCTTAGATATATATTGACAGACTCTGGGTCTTCCCTTTTGCAATGCCTGCTAAACTCATGGAATAAACAGGAAGAGTCTGAACGTCGGGGATTCCACTTTGTAGAGGTTACTAAGGAAGACCCAAATGATGATACATGTGGGATCTGTGGAGATGGAGGAGATTTGATCTGTTGTGACGGTTGTCCATCAACATTCCATAAAAGTTGCTTGGAGATAAAGAAGTTCCCATCTGGTGACTGGCACTGTGTATACTGCTCATGCAAATTCTGTGGGATGTTTGATGAGAATATGTGTCAAAGGGACAGTAGTGAGAATGTAGTTGCGTCAGCATTACTTACCTGCCATTTGTGTGAGGAAAAATATCATCGATGCTGTATTCAGGCAAAGGATGCTGTAAATGGTGATTCCAGCAGTCCATCCTTCTGCGCAAAGAATTGCCAAGAGCTATTTGTGAAACTGGAGAGGCTTCTTGGAGTTAGACATGAAGTGGAAGAAGGGTTTTCATTGACTCTCCTTCGCCGATTTGATGTGGGTGATACACCACAGAAGGTTGATTGCAACTCAAAGCTAATTGAATGCAATGCCAAACTGGCTGTTGCATTTTTAATAATGGATGAGTGTTTTCTGCCTATGGTTGACCAGAGAAGTGGAGTCAATCTGATCCATAACATTCTCTATAATCGTGGGTCAAATTTTAACCGATTGAATTATGGTGGTTTCTTCACTGCAATTCTAGAGAGGGGTGATGAGATCATATCTGCCGCAACCATCAGAATCCATGGAAACTATCTAGCAGAGATGCCATTTATTGGAACCCGCTATATGTATAGGCGTCAAGGAATGTGCCGCCGGCTTCTAAGTGCGATTGAATCTGCTCTCTGCTCTCTGAAAGTTGAAAGATTGGTCATACCTGCAATCTCAGAACTGACAGAAACGTGGACTTCTGTTTTTGGTTTTAAGTCCCTTGAAGAATCAAGTAAGCAGAAGATGAAGAACATGAATATCTTGGTTTTCCCTGGTGTAGATATCTTACAGAAACCATTGTTGAACCAGTTAACAGAAAAAAACGAGAGTCCTGTGAAAGGTTTGAGTTTTGCCAATCTCGAGCATCACAAAACCATTAAGGATGTGGTATGTAATACTGAAGAGGGACGTTTGGCTCGAACTGACAGTGAAGCAACTGCACCTTGTGTGCATGAAGGAAATGATGAGCTTGCTGCTGTTCAATCCAGCACACAGCTTCTCTGTGATGTTTCTCGTGATAATCTGGAGAGCAAGACCAATACCATCCCAATTCCTACTGATTCAGTGTGTGATGTTCTTGAACCAACCAAAGAGATAAATGAATGCCAAAATTCTGCCTCTGTTGCTGATGTGAGGGCATTGGAATTGGTCACCAAACAGAACCAGCCGGAGCTGTTATGCGATACTGCTGAGGGTTTCTTGGCTGGATCAGATGCTGAGGCAACTGCATCCTTTAAACACAAGGCAAATGATGAACTTGTTGCTGTTCAATCTGATACACAGCTTCCTTCTGGTGTTTCACATGATAATGTGGAGGGGGAAAACAATTCTATGACAATTCCTACTGGTCCAATTATTGATGCTCATGAACAAACTGAAGATACACAGCTTCTTTGTGGTGTTTCTCATGATAACCGGGAGGTAAACAATACTCTGACAATTCCTACTGATTCAATTAGTGACGGTCATGAACAAACTGAAGAGAGAAATGAACATCAAAATTCAGACTCTGTTCCTGATGTCAAGGAAGTGGAATTGGGCACCAAACAGAACCAATATAGCATGTCTAAAGTGGAAAGGAAATCTGATCTTCATCCTGAAGGTACTGATTCTGCTATAGAAGTTCGTTGTGCTTTAGGGGAGGGTACTGAAAACATTGACCGTAAGAATGTATCTTTAGTTCATGAAGCCAACGTTTCCAGTGAAAATAGTGTTCGCACTGGTTCAGAGATTACAACTCAGATATCTCATGATGCAAGGGACCATAGGCATTATGATTCTCAACATCTGCAGGTTGAAGGATCTATTTTCTGTTCAGATGAAAAGCTGCTTGAGACTTTTGAAGTGGAGAATAACCATTCTTTTATTCAGCACACTTCTATAGTGACTGAAGGGGTGCATCCAGAATCTATCAAGTGTTCCGACTCTAGAATTCTGACCAAAACTGGCAAGGTAGCCAGTGATGGATTTCACCAGGCTGCTGCGTTGACTCATGAAGAAGCAGATGATTCTAAAGGTCATTCTACAACTTTGCTGTTTGGTAGCAGCATTATTTGTACCTCTGGCAATGGGAAGAACACTCACAAAGTTGTCTCAACTCCAGCTGACAACAATTCTCATCCTTCTTGTGGGGCTAATATCAATAGTAATGGGAATTCCAATGCCCCTGATGTCCCTGGTGTCTACTTCACTTCCAATGGCGCTCATATGAGCACCAAGTCCTTGCAGCAATCTGATTTTGATTCTGATATTGATAATAACAGTATCAGACAGCCCAACTCGAGCAATACATGTGCATCTGGTGGGGGCAACTCCTTTGGTCCTTCAGAGGTGACAATTTTATCAAACCAGGGCCAGGCTAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009889 GO:0009890 GO:0009892 GO:0009966 GO:0009968 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0010646 GO:0010648 GO:0016567 GO:0016740 GO:0017015 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0023051 GO:0023057 GO:0030510 GO:0030514 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0045892 GO:0045934 GO:0046332 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070410 GO:0070412 GO:0070647 GO:0071704 GO:0080090 GO:0090092 GO:0090101 GO:0090287 GO:0090288 GO:0140096 GO:1901564 GO:1902679 GO:1903506 GO:1903507 GO:1903844 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AT_hook Jas PHD

Protein Analysis

928

Amino Acids

101.86

Weight (kDa)

5.07

Isoelectric Point (pI)

44.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	27 - 75	5.6e-16	Tify domain binding domain
PHD	PF00628	105 - 144	6.4e-06	PHD-finger
IDM1_C	PF23209	267 - 406	6.2e-60	Increased DNA methylation 1, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002658)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36670 AT5G36740 AT5G36740 AT5G36740 AT5G36740 AT5G36740
fragaria_vesca	FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330 FvH4_2g23330
malus_domestica	MD03G1262700.v1.1 MD11G1283400.v1.1
prunus_persica	Prupe.8G239000_v2.0.a1
pyrus_communis	pycom03g21020 pycom11g25090
rosa_chinensis	RchiOBHm_Chr6g0290741 RchiOBHm_Chr6g0290751
rosa_laevigata	RLG00000012182
rosa_multiflora	Rmu_co8421285.1_g000001 Rmu_sc0000043.1_g000020
rosa_roxburghii	Rroxscaffold_7G00176760
rosa_rugosa	Rorug06G0214400 Rorug06G0214500 Rorug06G0214600
rosa_samantha	Rh6AG325000 Rh6BG332600 Rh6CG338300 Rh6DG325800
rosa_wichuraiana	Rw6G028220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	604
Acc36I	ACCTGC	3 cut(s)	524, 1096, 2203
AccB1I	GGYRCC	1 cut(s)	1961
AccB7I	CCANNNNNTGG	1 cut(s)	986
AccI	GTMKAC	2 cut(s)	426, 2604
AciI	CCGC	3 cut(s)	939, 994, 1024
AclI	AACGTT	1 cut(s)	2115
AclWI	GGATC	4 cut(s)	326, 832, 1636, 2230
AcsI	RAATTY	8 cut(s)	99, 140, 440, 868, 1531, 1921, 2352, 2575
AcuI	CTGAAG	6 cut(s)	1341, 1818, 1920, 2040, 2331, 2730
AcyI	GRCGYC	1 cut(s)	1009
AdeI	CACNNNGTG	1 cut(s)	1367
AfaI	GTAC	4 cut(s)	44, 2026, 2068, 2479
AfiI	CCNNNNNNNGG	4 cut(s)	986, 1259, 2549, 2776
AflIII	ACRYGT	2 cut(s)	311, 2711
AhdI	GACNNNNNGTC	1 cut(s)	202
AjnI	CCWGG	5 cut(s)	1192, 2394, 2596, 2769, 2775
AluBI	AGCT	9 cut(s)	622, 745, 1390, 1417, 1594, 1705, 1810, 2248, 2525
AluI	AGCT	9 cut(s)	622, 745, 1390, 1417, 1594, 1705, 1810, 2248, 2525
Alw21I	GWGCWC	1 cut(s)	2636
Alw26I	GTCTC	2 cut(s)	2249, 2518
AlwI	GGATC	4 cut(s)	326, 832, 1636, 2230
AlwNI	CAGNNNCTG	3 cut(s)	200, 1637, 1931
Ama87I	CYCGRG	2 cut(s)	1280, 2701
AoxI	GGCC	1 cut(s)	2773
ApeKI	GCWGC	7 cut(s)	70, 1394, 2248, 2399, 2402, 2466, 2647
ApoI	RAATTY	8 cut(s)	99, 140, 440, 868, 1531, 1921, 2352, 2575
AspLEI	GCGC	2 cut(s)	605, 2624
AspS9I	GGNCC	4 cut(s)	1769, 2182, 2741, 2773
AsuC2I	CCSGG	1 cut(s)	1838
AsuHPI	GGTGA	7 cut(s)	422, 590, 722, 932, 1564, 2384, 2764
AvaI	CYCGRG	2 cut(s)	1280, 2701
AvaII	GGWCC	3 cut(s)	1769, 2182, 2741
BaeGI	GKGCMC	1 cut(s)	1964
BanI	GGYRCC	1 cut(s)	1961
BauI	CACGAG	1 cut(s)	1434
BbsI	GAAGAC	2 cut(s)	198, 300
Bbv12I	GWGCWC	1 cut(s)	2636
BbvCI	CCTCAGC	2 cut(s)	1611, 1638
BbvI	GCAGC	7 cut(s)	57, 1381, 2235, 2386, 2389, 2478, 2659
BccI	CCATC	9 cut(s)	89, 134, 323, 370, 412, 601, 953, 1472, 2378
BciT130I	CCWGG	5 cut(s)	1194, 2396, 2598, 2771, 2777
BcnI	CCSGG	1 cut(s)	1838
BcoDI	GTCTC	2 cut(s)	2249, 2518
BfaI	CTAG	4 cut(s)	911, 968, 2349, 2781
BfmI	CTRYAG	3 cut(s)	2037, 2210, 2301
BfoI	RGCGCY	1 cut(s)	2625
BfuAI	ACCTGC	3 cut(s)	524, 1096, 2203
BglI	GCCNNNNNGGC	1 cut(s)	767
BisI	GCNGC	9 cut(s)	71, 939, 1024, 1395, 2249, 2400, 2403, 2467, 2648
BlsI	GCNGC	9 cut(s)	72, 940, 1025, 1396, 2250, 2401, 2404, 2468, 2649
Bme1390I	CCNGG	6 cut(s)	1194, 1838, 2396, 2598, 2771, 2777
Bme18I	GGWCC	3 cut(s)	1769, 2182, 2741
BmeRI	GACNNNNNGTC	1 cut(s)	202
BmeT110I	CYCGRG	2 cut(s)	1280, 2701
BmgT120I	GGNCC	4 cut(s)	1769, 2182, 2741, 2773
BmiI	GGNNCC	4 cut(s)	16, 991, 1963, 2183
BmrFI	CCNGG	6 cut(s)	1194, 1838, 2396, 2598, 2771, 2777
BoxI	GACNNNNGTC	1 cut(s)	357
BpiI	GAAGAC	2 cut(s)	198, 300
BpmI	CTGGAG	3 cut(s)	656, 1466, 2505
Bpu10I	CCTNAGC	2 cut(s)	1611, 1638
BpuEI	CTTGAG	2 cut(s)	95, 2273
BpuMI	CCSGG	1 cut(s)	1838
Bsa29I	ATCGAT	1 cut(s)	544
BsaBI	GATNNNNATC	1 cut(s)	2013
BsaHI	GRCGYC	1 cut(s)	1009
BsaJI	CCNNGG	4 cut(s)	955, 1192, 2596, 2770
BsaWI	WCCGGW	1 cut(s)	155
Bsc4I	CCNNNNNNNGG	4 cut(s)	986, 1259, 2549, 2776
Bse118I	RCCGGY	1 cut(s)	1026
Bse1I	ACTGG	9 cut(s)	419, 639, 771, 1228, 1771, 2121, 2146, 2371, 2379
Bse3DI	GCAATG	3 cut(s)	224, 763, 2494
Bse8I	GATNNNNATC	1 cut(s)	2013
BseBI	CCWGG	5 cut(s)	1194, 2396, 2598, 2771, 2777
BseCI	ATCGAT	1 cut(s)	544
BseDI	CCNNGG	4 cut(s)	955, 1192, 2596, 2770
BseJI	GATNNNNATC	1 cut(s)	2013
BseLI	CCNNNNNNNGG	4 cut(s)	986, 1259, 2549, 2776
BseMI	GCAATG	3 cut(s)	224, 763, 2494
BseMII	CTCAG	5 cut(s)	162, 1110, 1602, 1629, 2174
BseNI	ACTGG	9 cut(s)	419, 639, 771, 1228, 1771, 2121, 2146, 2371, 2379
BseRI	GAGGAG	1 cut(s)	348
BseSI	GKGCMC	1 cut(s)	1964
BseXI	GCAGC	7 cut(s)	57, 1381, 2235, 2386, 2389, 2478, 2659
BsgI	GTGCAG	1 cut(s)	1344
BshFI	GGCC	1 cut(s)	2775
BshNI	GGYRCC	1 cut(s)	1961
BshVI	ATCGAT	1 cut(s)	544
BsiHKAI	GWGCWC	1 cut(s)	2636
BsiHKCI	CYCGRG	2 cut(s)	1280, 2701
BsiSI	CCGG	4 cut(s)	156, 1027, 1589, 1837
BslFI	GGGAC	5 cut(s)	491, 1123, 1341, 2195, 2579
BslI	CCNNNNNNNGG	4 cut(s)	986, 1259, 2549, 2776
BsmAI	GTCTC	2 cut(s)	2249, 2518
BsmFI	GGGAC	5 cut(s)	491, 1123, 1341, 2195, 2579
BsmI	GAATGC	2 cut(s)	758, 1529
BsnI	GGCC	1 cut(s)	2775
BsoBI	CYCGRG	2 cut(s)	1280, 2701
Bsp1286I	GDGCHC	2 cut(s)	1964, 2636
Bsp143I	GATC	7 cut(s)	318, 342, 837, 927, 1628, 2008, 2222
Bsp19I	CCATGG	1 cut(s)	955
BspACI	CCGC	3 cut(s)	939, 994, 1024
BspANI	GGCC	1 cut(s)	2775
BspCNI	CTCAG	5 cut(s)	163, 1109, 1603, 1630, 2173
BspDI	ATCGAT	1 cut(s)	544
BspHI	TCATGA	6 cut(s)	1786, 1828, 1888, 2104, 2170, 2413
BspLI	GGNNCC	4 cut(s)	16, 991, 1963, 2183
BspMAI	CTGCAG	1 cut(s)	2214
BspMI	ACCTGC	3 cut(s)	524, 1096, 2203
BspPI	GGATC	4 cut(s)	326, 832, 1636, 2230
BspT107I	GGYRCC	1 cut(s)	1961
BsrDI	GCAATG	3 cut(s)	224, 763, 2494
BsrFI	RCCGGY	1 cut(s)	1026
BsrI	ACTGG	9 cut(s)	419, 639, 771, 1228, 1771, 2121, 2146, 2371, 2379
BssAI	RCCGGY	1 cut(s)	1026
BssECI	CCNNGG	4 cut(s)	955, 1192, 2596, 2770
BssMI	GATC	7 cut(s)	318, 342, 837, 927, 1628, 2008, 2222
BssNAI	GTATAC	1 cut(s)	427
BssNI	GRCGYC	1 cut(s)	1009
BssSI	CACGAG	1 cut(s)	1434
BssT1I	CCWWGG	1 cut(s)	955
Bst1107I	GTATAC	1 cut(s)	427
Bst2BI	CACGAG	1 cut(s)	1434
Bst2UI	CCWGG	5 cut(s)	1194, 2396, 2598, 2771, 2777
Bst4CI	ACNGT	7 cut(s)	356, 422, 482, 1349, 1886, 2084, 2684
Bst6I	CTCTTC	4 cut(s)	53, 243, 1317, 1896
BstACI	GRCGYC	1 cut(s)	1009
BstAPI	GCANNNNNTGC	2 cut(s)	223, 566
BstC8I	GCNNGC	3 cut(s)	224, 1028, 1392
BstDEI	CTNAG	8 cut(s)	171, 179, 288, 1034, 1096, 1611, 1638, 2160
BstDSI	CCRYGG	1 cut(s)	955
BstEII	GGTNACC	1 cut(s)	1570
BstENI	CCTNNNNNAGG	1 cut(s)	1257
BstH2I	RGCGCY	1 cut(s)	2625
BstHHI	GCGC	2 cut(s)	605, 2624
BstKTI	GATC	7 cut(s)	321, 345, 840, 930, 1631, 2011, 2225
BstMAI	GTCTC	2 cut(s)	2249, 2518
BstMBI	GATC	7 cut(s)	318, 342, 837, 927, 1628, 2008, 2222
BstMWI	GCNNNNNNNGC	4 cut(s)	223, 566, 767, 1544
BstNI	CCWGG	5 cut(s)	1194, 2396, 2598, 2771, 2777
BstNSI	RCATGY	3 cut(s)	315, 1987, 2715
BstPAI	GACNNNNGTC	1 cut(s)	357
BstPI	GGTNACC	1 cut(s)	1570
BstSCI	CCNGG	6 cut(s)	1192, 1836, 2394, 2596, 2769, 2775
BstSFI	CTRYAG	3 cut(s)	2037, 2210, 2301
BstSLI	GKGCMC	1 cut(s)	1964
BstV1I	GCAGC	7 cut(s)	57, 1381, 2235, 2386, 2389, 2478, 2659
BstV2I	GAAGAC	2 cut(s)	198, 300
BstX2I	RGATCY	2 cut(s)	318, 2222
BstXI	CCANNNNNNTGG	1 cut(s)	824
BstYI	RGATCY	2 cut(s)	318, 2222
BstZ17I	GTATAC	1 cut(s)	427
Bsu15I	ATCGAT	1 cut(s)	544
BsuRI	GGCC	1 cut(s)	2775
BsuTUI	ATCGAT	1 cut(s)	544
BtgI	CCRYGG	1 cut(s)	955
BtsI	GCAGTG	1 cut(s)	900
BtsIMutI	CAGTG	7 cut(s)	418, 900, 1354, 1491, 2128, 2139, 2386
BveI	ACCTGC	3 cut(s)	524, 1096, 2203
Cac8I	GCNNGC	3 cut(s)	224, 1028, 1392
CaiI	CAGNNNCTG	3 cut(s)	200, 1637, 1931
CciI	TCATGA	6 cut(s)	1786, 1828, 1888, 2104, 2170, 2413
CfoI	GCGC	2 cut(s)	605, 2624
Cfr10I	RCCGGY	1 cut(s)	1026
Cfr13I	GGNCC	4 cut(s)	1769, 2182, 2741, 2773
ClaI	ATCGAT	1 cut(s)	544
CseI	GACGC	2 cut(s)	489, 998
Csp6I	GTAC	4 cut(s)	43, 2025, 2067, 2478
CspCI	CAANNNNNGTGG	2 cut(s)	427, 462
CviQI	GTAC	4 cut(s)	43, 2025, 2067, 2478
DdeI	CTNAG	8 cut(s)	171, 179, 288, 1034, 1096, 1611, 1638, 2160
DpnI	GATC	7 cut(s)	320, 344, 839, 929, 1630, 2010, 2224
DpnII	GATC	7 cut(s)	318, 342, 837, 927, 1628, 2008, 2222
DraI	TTTAAA	1 cut(s)	1657
DraIII	CACNNNGTG	1 cut(s)	1367
DriI	GACNNNNNGTC	1 cut(s)	202
Eam1104I	CTCTTC	4 cut(s)	53, 243, 1317, 1896
Eam1105I	GACNNNNNGTC	1 cut(s)	202
EarI	CTCTTC	4 cut(s)	53, 243, 1317, 1896
Eco130I	CCWWGG	1 cut(s)	955
Eco32I	GATATC	2 cut(s)	1204, 2166
Eco47I	GGWCC	3 cut(s)	1769, 2182, 2741
Eco57I	CTGAAG	6 cut(s)	1341, 1818, 1920, 2040, 2331, 2730
Eco88I	CYCGRG	2 cut(s)	1280, 2701
Eco91I	GGTNACC	1 cut(s)	1570
EcoNI	CCTNNNNNAGG	1 cut(s)	1257
EcoO65I	GGTNACC	1 cut(s)	1570
EcoRI	GAATTC	3 cut(s)	99, 2352, 2575
EcoRII	CCWGG	5 cut(s)	1192, 2394, 2596, 2769, 2775
EcoRV	GATATC	2 cut(s)	1204, 2166
EcoT14I	CCWWGG	1 cut(s)	955
ErhI	CCWWGG	1 cut(s)	955
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FaqI	GGGAC	5 cut(s)	491, 1123, 1341, 2195, 2579
FauI	CCCGC	1 cut(s)	1001
FauNDI	CATATG	1 cut(s)	2628
FblI	GTMKAC	2 cut(s)	426, 2604
Fnu4HI	GCNGC	9 cut(s)	71, 939, 1024, 1395, 2249, 2400, 2403, 2467, 2648
Fsp4HI	GCNGC	9 cut(s)	71, 939, 1024, 1395, 2249, 2400, 2403, 2467, 2648
FspBI	CTAG	4 cut(s)	911, 968, 2349, 2781
FspI	TGCGCA	1 cut(s)	604
GlaI	GCGC	2 cut(s)	604, 2623
GluI	GCNGC	9 cut(s)	71, 939, 1024, 1395, 2249, 2400, 2403, 2467, 2648
GsuI	CTGGAG	3 cut(s)	656, 1466, 2505
HaeII	RGCGCY	1 cut(s)	2625
HaeIII	GGCC	1 cut(s)	2775
HapII	CCGG	4 cut(s)	156, 1027, 1589, 1837
HgaI	GACGC	2 cut(s)	489, 998
HhaI	GCGC	2 cut(s)	605, 2624
Hin1I	GRCGYC	1 cut(s)	1009
Hin6I	GCGC	2 cut(s)	603, 2622
HinP1I	GCGC	2 cut(s)	603, 2622
HincII	GTYRAC	4 cut(s)	7, 814, 1233, 2409
HindII	GTYRAC	4 cut(s)	7, 814, 1233, 2409
HpaI	GTTAAC	1 cut(s)	1233
HpaII	CCGG	4 cut(s)	156, 1027, 1589, 1837
HphI	GGTGA	7 cut(s)	422, 590, 722, 932, 1564, 2384, 2764
Hpy166II	GTNNAC	8 cut(s)	7, 427, 814, 1116, 1233, 1846, 2409, 2605
Hpy8I	GTNNAC	8 cut(s)	7, 427, 814, 1116, 1233, 1846, 2409, 2605
Hpy99I	CGWCG	1 cut(s)	264
HpyCH4III	ACNGT	7 cut(s)	356, 422, 482, 1349, 1886, 2084, 2684
HpyCH4IV	ACGT	4 cut(s)	259, 1112, 1330, 2115
HpyF10VI	GCNNNNNNNGC	4 cut(s)	223, 566, 767, 1544
HpyF3I	CTNAG	8 cut(s)	171, 179, 288, 1034, 1096, 1611, 1638, 2160
HpySE526I	ACGT	4 cut(s)	259, 1112, 1330, 2115
Hsp92I	GRCGYC	1 cut(s)	1009
HspAI	GCGC	2 cut(s)	603, 2622
KroI	GCCGGC	1 cut(s)	1026
KroNI	GCCGGC	1 cut(s)	1028
KspAI	GTTAAC	1 cut(s)	1233
Kzo9I	GATC	7 cut(s)	318, 342, 837, 927, 1628, 2008, 2222
LmnI	GCTCC	1 cut(s)	1591
Lsp1109I	GCAGC	7 cut(s)	57, 1381, 2235, 2386, 2389, 2478, 2659
MaeI	CTAG	4 cut(s)	911, 968, 2349, 2781
MaeII	ACGT	4 cut(s)	259, 1112, 1330, 2115
MalI	GATC	7 cut(s)	320, 344, 839, 929, 1630, 2010, 2224
MboI	GATC	7 cut(s)	318, 342, 837, 927, 1628, 2008, 2222
MflI	RGATCY	2 cut(s)	318, 2222
MhlI	GDGCHC	2 cut(s)	1964, 2636
MlyI	GAGTC	8 cut(s)	191, 260, 679, 837, 1258, 1922, 2339, 2404
MmeI	TCCRAC	1 cut(s)	2367
MroNI	GCCGGC	1 cut(s)	1026
MseI	TTAA	7 cut(s)	27, 782, 873, 1134, 1232, 1299, 1656
MslI	CAYNNNNRTG	2 cut(s)	525, 1728
MspA1I	CMGCKG	1 cut(s)	2525
MspI	CCGG	4 cut(s)	156, 1027, 1589, 1837
MspR9I	CCNGG	6 cut(s)	1194, 1838, 2396, 2598, 2771, 2777
Mva1269I	GAATGC	2 cut(s)	758, 1529
MvaI	CCWGG	5 cut(s)	1194, 2396, 2598, 2771, 2777
MwoI	GCNNNNNNNGC	4 cut(s)	223, 566, 767, 1544
NaeI	GCCGGC	1 cut(s)	1028
NciI	CCSGG	1 cut(s)	1838
NcoI	CCATGG	1 cut(s)	955
NdeI	CATATG	1 cut(s)	2628
NdeII	GATC	7 cut(s)	318, 342, 837, 927, 1628, 2008, 2222
NgoMIV	GCCGGC	1 cut(s)	1026
NlaIV	GGNNCC	4 cut(s)	16, 991, 1963, 2183
NmuCI	GTSAC	8 cut(s)	21, 116, 350, 410, 1570, 1880, 2305, 2752
NsbI	TGCGCA	1 cut(s)	604
NspI	RCATGY	3 cut(s)	315, 1987, 2715
PaeR7I	CTCGAG	2 cut(s)	1280, 2701
PagI	TCATGA	6 cut(s)	1786, 1828, 1888, 2104, 2170, 2413
PciI	ACATGT	2 cut(s)	311, 2711
PcsI	WCGNNNNNNNCGW	1 cut(s)	1336
PctI	GAATGC	2 cut(s)	758, 1529
PdiI	GCCGGC	1 cut(s)	1028
PflMI	CCANNNNNTGG	1 cut(s)	986
PkrI	GCNGC	9 cut(s)	72, 940, 1025, 1396, 2250, 2401, 2404, 2468, 2649
PleI	GAGTC	8 cut(s)	191, 259, 679, 836, 1257, 1922, 2339, 2404
PpsI	GAGTC	8 cut(s)	191, 259, 679, 836, 1257, 1922, 2339, 2404
PscI	ACATGT	2 cut(s)	311, 2711
PshAI	GACNNNNGTC	1 cut(s)	357
Psp1406I	AACGTT	1 cut(s)	2115
Psp6I	CCWGG	5 cut(s)	1192, 2394, 2596, 2769, 2775
PspEI	GGTNACC	1 cut(s)	1570
PspGI	CCWGG	5 cut(s)	1192, 2394, 2596, 2769, 2775
PspN4I	GGNNCC	4 cut(s)	16, 991, 1963, 2183
PspPI	GGNCC	4 cut(s)	1769, 2182, 2741, 2773
PspXI	VCTCGAGB	1 cut(s)	2701
PsrI	GAACNNNNNNTAC	2 cut(s)	2085, 2117
PstI	CTGCAG	1 cut(s)	2214
PstNI	CAGNNNCTG	3 cut(s)	200, 1637, 1931
PsuI	RGATCY	2 cut(s)	318, 2222
PvuII	CAGCTG	1 cut(s)	2525
RsaI	GTAC	4 cut(s)	44, 2026, 2068, 2479
RsaNI	GTAC	4 cut(s)	43, 2025, 2067, 2478
RseI	CAYNNNNRTG	2 cut(s)	525, 1728
SaqAI	TTAA	7 cut(s)	27, 782, 873, 1134, 1232, 1299, 1656
SatI	GCNGC	9 cut(s)	71, 939, 1024, 1395, 2249, 2400, 2403, 2467, 2648
Sau3AI	GATC	7 cut(s)	318, 342, 837, 927, 1628, 2008, 2222
Sau96I	GGNCC	4 cut(s)	1769, 2182, 2741, 2773
SchI	GAGTC	8 cut(s)	191, 260, 679, 837, 1258, 1922, 2339, 2404
ScrFI	CCNGG	6 cut(s)	1194, 1838, 2396, 2598, 2771, 2777
SduI	GDGCHC	2 cut(s)	1964, 2636
SfcI	CTRYAG	3 cut(s)	2037, 2210, 2301
Sfr274I	CTCGAG	2 cut(s)	1280, 2701
SinI	GGWCC	3 cut(s)	1769, 2182, 2741
SlaI	CTCGAG	2 cut(s)	1280, 2701
SmiMI	CAYNNNNRTG	2 cut(s)	525, 1728
SmlI	CTYRAG	4 cut(s)	74, 1280, 2252, 2701
SmoI	CTYRAG	4 cut(s)	74, 1280, 2252, 2701
SsiI	CCGC	3 cut(s)	939, 994, 1024
SspMI	CTAG	4 cut(s)	911, 968, 2349, 2781
StyD4I	CCNGG	6 cut(s)	1192, 1836, 2394, 2596, 2769, 2775
StyI	CCWWGG	1 cut(s)	955
TaaI	ACNGT	7 cut(s)	356, 422, 482, 1349, 1886, 2084, 2684
TaiI	ACGT	4 cut(s)	262, 1115, 1333, 2118
TaqI	TCGA	4 cut(s)	544, 1281, 1339, 2702
TatI	WGTACW	1 cut(s)	42
TauI	GCSGC	2 cut(s)	941, 1026
Tru1I	TTAA	7 cut(s)	27, 782, 873, 1134, 1232, 1299, 1656
Tru9I	TTAA	7 cut(s)	27, 782, 873, 1134, 1232, 1299, 1656
TscAI	CASTG	7 cut(s)	425, 907, 1354, 1491, 2128, 2146, 2386
TseFI	GTSAC	8 cut(s)	21, 116, 350, 410, 1570, 1880, 2305, 2752
TseI	GCWGC	7 cut(s)	70, 1394, 2248, 2399, 2402, 2466, 2647
Tsp45I	GTSAC	8 cut(s)	21, 116, 350, 410, 1570, 1880, 2305, 2752
TspRI	CASTG	7 cut(s)	425, 907, 1354, 1491, 2128, 2146, 2386
Van91I	CCANNNNNTGG	1 cut(s)	986
VpaK11BI	GGWCC	3 cut(s)	1769, 2182, 2741
XagI	CCTNNNNNAGG	1 cut(s)	1257
XapI	RAATTY	8 cut(s)	99, 140, 440, 868, 1531, 1921, 2352, 2575
XbaI	TCTAGA	2 cut(s)	910, 2348
XceI	RCATGY	3 cut(s)	315, 1987, 2715
XcmI	CCANNNNNNNNNTGG	2 cut(s)	411, 1303
XhoI	CTCGAG	2 cut(s)	1280, 2701
XmiI	GTMKAC	2 cut(s)	426, 2604
XspI	CTAG	4 cut(s)	911, 968, 2349, 2781

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.